RNA–Protein interactions for RNA: ENST00000481999.1

CHD3-211, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 2,515 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-211ENST00000481999 TMEM161AQ9NX61 479 aa14.85□□□□□ -0.03
CHD3-211ENST00000481999 PCDHB7Q9Y5E2 793 aa14.85□□□□□ -0.03
CHD3-211ENST00000481999 MAD1L1Q9Y6D9 718 aa14.85□□□□□ -0.03
CHD3-211ENST00000481999 RPL17P18621 184 aaKnown RBP14.84□□□□□ -0.03
CHD3-211ENST00000481999 NR2C2P49116 596 aa14.84□□□□□ -0.03
CHD3-211ENST00000481999 LVRNQ6Q4G3 990 aa14.84□□□□□ -0.03
CHD3-211ENST00000481999 PRSS55Q6UWB4 352 aaPredicted RBP14.84□□□□□ -0.03
CHD3-211ENST00000481999 LIN28BQ6ZN17 250 aaKnown RBP eCLIP14.84□□□□□ -0.03
CHD3-211ENST00000481999 ZNF567Q8N184 647 aa14.84□□□□□ -0.03
CHD3-211ENST00000481999 COLGALT1Q8NBJ5 622 aa14.84□□□□□ -0.03
CHD3-211ENST00000481999 ERP27Q96DN0 273 aa14.84□□□□□ -0.03
CHD3-211ENST00000481999 ZNF419Q96HQ0 510 aaPredicted RBP14.84□□□□□ -0.03
CHD3-211ENST00000481999 MYLK2Q9H1R3 596 aa14.84□□□□□ -0.03
CHD3-211ENST00000481999 ADAM28Q9UKQ2 775 aa14.84□□□□□ -0.03
CHD3-211ENST00000481999 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP14.84□□□□□ -0.03
CHD3-211ENST00000481999 TYMPP19971 482 aa14.84□□□□□ -0.03
CHD3-211ENST00000481999 CCND1P24385 295 aa14.84□□□□□ -0.03
CHD3-211ENST00000481999 CXCR3P49682 368 aa14.84□□□□□ -0.03
CHD3-211ENST00000481999 SEPT7Q16181 437 aaKnown RBP14.84□□□□□ -0.03
CHD3-211ENST00000481999 CTXN3Q4LDR2 81 aa14.84□□□□□ -0.03
CHD3-211ENST00000481999 DIS3LQ8TF46 1054 aaKnown RBP14.84□□□□□ -0.03
CHD3-211ENST00000481999 EBF2Q9HAK2 575 aa14.84□□□□□ -0.03
CHD3-211ENST00000481999 SMYD2Q9NRG4 433 aa14.84□□□□□ -0.03
CHD3-211ENST00000481999 GEMIN8Q9NWZ8 242 aaKnown RBP14.84□□□□□ -0.03
CHD3-211ENST00000481999 UBP1Q9NZI7 540 aa14.84□□□□□ -0.03
CHD3-211ENST00000481999 CHKBQ9Y259 395 aa14.84□□□□□ -0.03
CHD3-211ENST00000481999 STK38LQ9Y2H1 464 aa14.84□□□□□ -0.03
CHD3-211ENST00000481999 TBKBP1A7MCY6 615 aa14.83□□□□□ -0.04
CHD3-211ENST00000481999 ZNF487B1APH4 448 aa14.83□□□□□ -0.04
CHD3-211ENST00000481999 TM9SF1O15321 606 aa14.83□□□□□ -0.04
CHD3-211ENST00000481999 GCATO75600 419 aa14.83□□□□□ -0.04
CHD3-211ENST00000481999 OAZ2O95190 189 aa14.83□□□□□ -0.04
CHD3-211ENST00000481999 ZFXP17010 805 aaPredicted RBP14.83□□□□□ -0.04
CHD3-211ENST00000481999 PRKD1Q15139 912 aaPredicted RBP14.83□□□□□ -0.04
CHD3-211ENST00000481999 AGAP11Q8TF27 550 aa14.83□□□□□ -0.04
CHD3-211ENST00000481999 ZNF75CPQ92670 426 aaPredicted RBP14.83□□□□□ -0.04
CHD3-211ENST00000481999 CYTH2Q99418 400 aa14.83□□□□□ -0.04
CHD3-211ENST00000481999 GORASP1Q9BQQ3 440 aa14.83□□□□□ -0.04
CHD3-211ENST00000481999 ZCWPW1Q9H0M4 648 aa14.83□□□□□ -0.04
CHD3-211ENST00000481999 LRMDAQ9H2I8 198 aa14.83□□□□□ -0.04
CHD3-211ENST00000481999 MPP6Q9NZW5 540 aa14.83□□□□□ -0.04
CHD3-211ENST00000481999 TRIM33Q9UPN9 1127 aa14.83□□□□□ -0.04
CHD3-211ENST00000481999 A0A0A0MRY4 1105 aa14.83□□□□□ -0.04
CHD3-211ENST00000481999 CFAP69A5D8W1 941 aa14.83□□□□□ -0.04
CHD3-211ENST00000481999 ADAM12O43184 909 aa14.83□□□□□ -0.04
CHD3-211ENST00000481999 ZBTB17Q13105 803 aa14.83□□□□□ -0.04
CHD3-211ENST00000481999 SPDYAQ5MJ70 313 aa14.83□□□□□ -0.04
CHD3-211ENST00000481999 FYB2Q5VWT5 728 aa14.83□□□□□ -0.04
CHD3-211ENST00000481999 BTBD8Q5XKL5 378 aa14.83□□□□□ -0.04
CHD3-211ENST00000481999 FAM117BQ6P1L5 589 aa14.83□□□□□ -0.04
CHD3-211ENST00000481999 CES3Q6UWW8 571 aa14.83□□□□□ -0.04
CHD3-211ENST00000481999 THOC1Q96FV9 657 aaKnown RBP14.83□□□□□ -0.04
CHD3-211ENST00000481999 SPATA13Q96N96 652 aa14.83□□□□□ -0.04
CHD3-211ENST00000481999 NEU3Q9UQ49 428 aa14.83□□□□□ -0.04
CHD3-211ENST00000481999 REV3LO60673 3130 aa14.82□□□□□ -0.04
CHD3-211ENST00000481999 C2CD2LO14523 706 aa14.82□□□□□ -0.04
CHD3-211ENST00000481999 VNN2O95498 520 aa14.82□□□□□ -0.04
CHD3-211ENST00000481999 C1QAP02745 245 aa14.82□□□□□ -0.04
CHD3-211ENST00000481999 SESN2P58004 480 aaPredicted RBP14.82□□□□□ -0.04
CHD3-211ENST00000481999 SCAPQ12770 1279 aa14.82□□□□□ -0.04
CHD3-211ENST00000481999 PARP6Q2NL67 630 aa14.82□□□□□ -0.04
CHD3-211ENST00000481999 RNF19BQ6ZMZ0 732 aa14.82□□□□□ -0.04
CHD3-211ENST00000481999 C4orf50Q6ZRC1 276 aa14.82□□□□□ -0.04
CHD3-211ENST00000481999 CTAGE3PQ8IX95 158 aa14.82□□□□□ -0.04
CHD3-211ENST00000481999 ZNF398Q8TD17 642 aa14.82□□□□□ -0.04
CHD3-211ENST00000481999 USP33Q8TEY7 942 aa14.82□□□□□ -0.04
CHD3-211ENST00000481999 MZB1Q8WU39 189 aa14.82□□□□□ -0.04
CHD3-211ENST00000481999 DCAKDQ8WVC6 231 aa14.82□□□□□ -0.04
CHD3-211ENST00000481999 C10orf82Q8WW14 230 aa14.82□□□□□ -0.04
CHD3-211ENST00000481999 NTAN1Q96AB6 310 aa14.82□□□□□ -0.04
CHD3-211ENST00000481999 PGAP3Q96FM1 320 aaPredicted RBP14.82□□□□□ -0.04
CHD3-211ENST00000481999 SEPT5Q99719 369 aaPredicted RBP14.82□□□□□ -0.04
CHD3-211ENST00000481999 APOL2Q9BQE5 337 aa14.82□□□□□ -0.04
CHD3-211ENST00000481999 HIPK3Q9H422 1215 aa14.82□□□□□ -0.04
CHD3-211ENST00000481999 PAK6Q9NQU5 681 aaPredicted RBP14.82□□□□□ -0.04
CHD3-211ENST00000481999 GMIPQ9P107 970 aa14.82□□□□□ -0.04
CHD3-211ENST00000481999 ZC3H7BQ9UGR2 993 aaKnown RBP14.82□□□□□ -0.04
CHD3-211ENST00000481999 IRAK2O43187 625 aa14.82□□□□□ -0.04
CHD3-211ENST00000481999 PAGE1O75459 146 aa14.82□□□□□ -0.04
CHD3-211ENST00000481999 CPB1P15086 417 aa14.82□□□□□ -0.04
CHD3-211ENST00000481999 PAFAH1B3Q15102 231 aaKnown RBP14.82□□□□□ -0.04
CHD3-211ENST00000481999 OTOAQ7RTW8 1153 aa14.82□□□□□ -0.04
CHD3-211ENST00000481999 PID1Q7Z2X4 250 aa14.82□□□□□ -0.04
CHD3-211ENST00000481999 BANPQ8N9N5 519 aa14.82□□□□□ -0.04
CHD3-211ENST00000481999 STAMBPL1Q96FJ0 436 aa14.82□□□□□ -0.04
CHD3-211ENST00000481999 FTHL17Q9BXU8 183 aa14.82□□□□□ -0.04
CHD3-211ENST00000481999 VPS11Q9H270 941 aa14.82□□□□□ -0.04
CHD3-211ENST00000481999 NOP53Q9NZM5 478 aaKnown RBP14.82□□□□□ -0.04
CHD3-211ENST00000481999 RCOR3Q9P2K3 495 aaPredicted RBP14.82□□□□□ -0.04
CHD3-211ENST00000481999 LRFN2Q9ULH4 789 aa14.82□□□□□ -0.04
CHD3-211ENST00000481999 TTLL3Q9Y4R7 772 aa14.82□□□□□ -0.04
CHD3-211ENST00000481999 WDR27A2RRH5 827 aa14.81□□□□□ -0.04
CHD3-211ENST00000481999 WFS1O76024 890 aa14.81□□□□□ -0.04
CHD3-211ENST00000481999 IGLV3-25P01717 112 aa14.81□□□□□ -0.04
CHD3-211ENST00000481999 ADRA1DP25100 572 aa14.81□□□□□ -0.04
CHD3-211ENST00000481999 PRMT2P55345 433 aa14.81□□□□□ -0.04
CHD3-211ENST00000481999 MAPRE1Q15691 268 aaKnown RBP14.81□□□□□ -0.04
CHD3-211ENST00000481999 TRIM60Q495X7 471 aa14.81□□□□□ -0.04
CHD3-211ENST00000481999 UNC5AQ6ZN44 842 aa14.81□□□□□ -0.04
CHD3-211ENST00000481999 C14orf80Q86SX3 495 aa14.81□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms