RNA–Protein interactions for RNA: ENST00000477970.1

PTPRF-212, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 3,321 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-212ENST00000477970 ITPRIPL1Q6GPH6 555 aa12.53□□□□□ -0.4
PTPRF-212ENST00000477970 PACS1Q6VY07 963 aa12.53□□□□□ -0.4
PTPRF-212ENST00000477970 MYLPFQ96A32 169 aa12.53□□□□□ -0.4
PTPRF-212ENST00000477970 ARHGEF38Q9NXL2 777 aa12.53□□□□□ -0.4
PTPRF-212ENST00000477970 MAGEB16A2A368 324 aa12.53□□□□□ -0.4
PTPRF-212ENST00000477970 I6L893 689 aaPredicted RBP12.53□□□□□ -0.4
PTPRF-212ENST00000477970 POLBP06746 335 aa12.53□□□□□ -0.4
PTPRF-212ENST00000477970 BPGMP07738 259 aa12.53□□□□□ -0.4
PTPRF-212ENST00000477970 NCAM1P13591 858 aa12.53□□□□□ -0.4
PTPRF-212ENST00000477970 IGFBP6P24592 240 aaPredicted RBP12.53□□□□□ -0.4
PTPRF-212ENST00000477970 CACNA2D1P54289 1103 aa12.53□□□□□ -0.4
PTPRF-212ENST00000477970 OCRLQ01968 901 aa12.53□□□□□ -0.4
PTPRF-212ENST00000477970 CCSAPQ6IQ19 270 aaPredicted RBP12.53□□□□□ -0.4
PTPRF-212ENST00000477970 RFWD2Q8NHY2 731 aa12.53□□□□□ -0.4
PTPRF-212ENST00000477970 LRRN4Q8WUT4 740 aa12.53□□□□□ -0.4
PTPRF-212ENST00000477970 SLC7A6OSQ96CW6 309 aaPredicted RBP12.53□□□□□ -0.4
PTPRF-212ENST00000477970 DMAP1Q9NPF5 467 aaPredicted RBP12.53□□□□□ -0.4
PTPRF-212ENST00000477970 ANLNQ9NQW6 1124 aa12.53□□□□□ -0.4
PTPRF-212ENST00000477970 ALPK3Q96L96 1907 aa12.53□□□□□ -0.4
PTPRF-212ENST00000477970 FAM72CH0Y354 149 aa12.52□□□□□ -0.4
PTPRF-212ENST00000477970 UGT1A9O60656 530 aa12.52□□□□□ -0.4
PTPRF-212ENST00000477970 GLRA3O75311 464 aa12.52□□□□□ -0.4
PTPRF-212ENST00000477970 BGNP21810 368 aa12.52□□□□□ -0.4
PTPRF-212ENST00000477970 GJA8P48165 433 aa12.52□□□□□ -0.4
PTPRF-212ENST00000477970 ARFIP2P53365 341 aa12.52□□□□□ -0.4
PTPRF-212ENST00000477970 TUSC3Q13454 348 aa12.52□□□□□ -0.4
PTPRF-212ENST00000477970 BRMS1LQ5PSV4 323 aa12.52□□□□□ -0.4
PTPRF-212ENST00000477970 GRTP1Q5TC63 336 aa12.52□□□□□ -0.4
PTPRF-212ENST00000477970 FAM72AQ5TYM5 149 aa12.52□□□□□ -0.4
PTPRF-212ENST00000477970 FAM72DQ6L9T8 149 aa12.52□□□□□ -0.4
PTPRF-212ENST00000477970 CXCL17Q6UXB2 119 aa12.52□□□□□ -0.4
PTPRF-212ENST00000477970 TMEM135Q86UB9 458 aa12.52□□□□□ -0.4
PTPRF-212ENST00000477970 FAM72BQ86X60 149 aa12.52□□□□□ -0.4
PTPRF-212ENST00000477970 KCNK16Q96T55 309 aa12.52□□□□□ -0.4
PTPRF-212ENST00000477970 CPNE1Q99829 537 aa12.52□□□□□ -0.4
PTPRF-212ENST00000477970 TMEM106CQ9BVX2 250 aa12.52□□□□□ -0.4
PTPRF-212ENST00000477970 LRRC40Q9H9A6 602 aa12.52□□□□□ -0.4
PTPRF-212ENST00000477970 UGT1A7Q9HAW7 530 aa12.52□□□□□ -0.4
PTPRF-212ENST00000477970 UGT1A10Q9HAW8 530 aa12.52□□□□□ -0.4
PTPRF-212ENST00000477970 UGT1A8Q9HAW9 530 aa12.52□□□□□ -0.4
PTPRF-212ENST00000477970 TMPRSS4Q9NRS4 437 aa12.52□□□□□ -0.4
PTPRF-212ENST00000477970 I3L4J1 428 aa12.52□□□□□ -0.41
PTPRF-212ENST00000477970 USP1O94782 785 aa12.52□□□□□ -0.41
PTPRF-212ENST00000477970 USP17L7P0C7H9 530 aa12.52□□□□□ -0.41
PTPRF-212ENST00000477970 CCND1P24385 295 aa12.52□□□□□ -0.41
PTPRF-212ENST00000477970 MGAT1P26572 445 aa12.52□□□□□ -0.41
PTPRF-212ENST00000477970 GARSP41250 739 aaKnown RBP12.52□□□□□ -0.41
PTPRF-212ENST00000477970 COG7P83436 770 aa12.52□□□□□ -0.41
PTPRF-212ENST00000477970 CCDC117Q8IWD4 279 aaPredicted RBP12.52□□□□□ -0.41
PTPRF-212ENST00000477970 STKLD1Q8NE28 680 aa12.52□□□□□ -0.41
PTPRF-212ENST00000477970 E2F7Q96AV8 911 aa12.52□□□□□ -0.41
PTPRF-212ENST00000477970 PPP1R2P1Q96PQ5 205 aa12.52□□□□□ -0.41
PTPRF-212ENST00000477970 C12orf65Q9H3J6 166 aaKnown RBP12.52□□□□□ -0.41
PTPRF-212ENST00000477970 AGO3Q9H9G7 860 aaKnown RBP12.52□□□□□ -0.41
PTPRF-212ENST00000477970 DDIT4Q9NX09 232 aa12.52□□□□□ -0.41
PTPRF-212ENST00000477970 DCDC2Q9UHG0 476 aa12.52□□□□□ -0.41
PTPRF-212ENST00000477970 PADI3Q9ULW8 664 aa12.52□□□□□ -0.41
PTPRF-212ENST00000477970 WDR91A4D1P6 747 aa12.52□□□□□ -0.41
PTPRF-212ENST00000477970 ELNP15502 786 aa12.52□□□□□ -0.41
PTPRF-212ENST00000477970 PTPN4P29074 926 aa12.52□□□□□ -0.41
PTPRF-212ENST00000477970 NPY2RP49146 381 aa12.52□□□□□ -0.41
PTPRF-212ENST00000477970 NRG1Q02297 640 aaPredicted RBP12.52□□□□□ -0.41
PTPRF-212ENST00000477970 TAF1BQ53T94 588 aaPredicted RBP12.52□□□□□ -0.41
PTPRF-212ENST00000477970 CCNYQ8ND76 341 aa12.52□□□□□ -0.41
PTPRF-212ENST00000477970 LPPQ93052 612 aa12.52□□□□□ -0.41
PTPRF-212ENST00000477970 SUSD3Q96L08 255 aa12.52□□□□□ -0.41
PTPRF-212ENST00000477970 HAPLN3Q96S86 360 aa12.52□□□□□ -0.41
PTPRF-212ENST00000477970 STN1Q9H668 368 aaKnown RBP12.52□□□□□ -0.41
PTPRF-212ENST00000477970 WDCPQ9H6R7 721 aa12.52□□□□□ -0.41
PTPRF-212ENST00000477970 SYBUQ9NX95 663 aa12.52□□□□□ -0.41
PTPRF-212ENST00000477970 FNIP2Q9P278 1114 aa12.52□□□□□ -0.41
PTPRF-212ENST00000477970 NEU3Q9UQ49 428 aa12.52□□□□□ -0.41
PTPRF-212ENST00000477970 AFF1P51825 1210 aaKnown RBP12.51□□□□□ -0.41
PTPRF-212ENST00000477970 TRIM71Q2Q1W2 868 aaKnown RBP12.51□□□□□ -0.41
PTPRF-212ENST00000477970 CCDC91Q7Z6B0 441 aa12.51□□□□□ -0.41
PTPRF-212ENST00000477970 ZNF598Q86UK7 904 aaKnown RBP12.51□□□□□ -0.41
PTPRF-212ENST00000477970 NDUFAF2Q8N183 169 aa12.51□□□□□ -0.41
PTPRF-212ENST00000477970 ZSCAN18Q8TBC5 510 aaPredicted RBP12.51□□□□□ -0.41
PTPRF-212ENST00000477970 UTP4Q969X6 686 aaKnown RBP12.51□□□□□ -0.41
PTPRF-212ENST00000477970 PTCD3Q96EY7 689 aaKnown RBP12.51□□□□□ -0.41
PTPRF-212ENST00000477970 TMEM120AQ9BXJ8 343 aa12.51□□□□□ -0.41
PTPRF-212ENST00000477970 CD248Q9HCU0 757 aa12.51□□□□□ -0.41
PTPRF-212ENST00000477970 XPNPEP3Q9NQH7 507 aa12.51□□□□□ -0.41
PTPRF-212ENST00000477970 MGEA5O60502 916 aa12.51□□□□□ -0.41
PTPRF-212ENST00000477970 GP5P40197 560 aa12.51□□□□□ -0.41
PTPRF-212ENST00000477970 UBE2Q1Q7Z7E8 422 aa12.51□□□□□ -0.41
PTPRF-212ENST00000477970 NPWQ8N729 165 aa12.51□□□□□ -0.41
PTPRF-212ENST00000477970 RSPH1Q8WYR4 309 aa12.51□□□□□ -0.41
PTPRF-212ENST00000477970 CERS2Q96G23 380 aa12.51□□□□□ -0.41
PTPRF-212ENST00000477970 MCMBPQ9BTE3 642 aa12.51□□□□□ -0.41
PTPRF-212ENST00000477970 XRN2Q9H0D6 950 aaKnown RBP eCLIP12.51□□□□□ -0.41
PTPRF-212ENST00000477970 KLHL8Q9P2G9 620 aaPredicted RBP12.51□□□□□ -0.41
PTPRF-212ENST00000477970 FAM237BA0A1B0GVD1 139 aa12.5□□□□□ -0.41
PTPRF-212ENST00000477970 TMEM189-UBE2V1I3L0A0 370 aa12.5□□□□□ -0.41
PTPRF-212ENST00000477970 BMPR2Q13873 1038 aa12.5□□□□□ -0.41
PTPRF-212ENST00000477970 PID1Q7Z2X4 250 aa12.5□□□□□ -0.41
PTPRF-212ENST00000477970 MTDHQ86UE4 582 aaKnown RBP12.5□□□□□ -0.41
PTPRF-212ENST00000477970 THEM5Q8N1Q8 247 aa12.5□□□□□ -0.41
PTPRF-212ENST00000477970 ATP2A3Q93084 1043 aa12.5□□□□□ -0.41
PTPRF-212ENST00000477970 EBF2Q9HAK2 575 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 74.4 ms