RNA–Protein interactions for RNA: ENST00000474572.6

USP39-214, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 293 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-214ENST00000474572 KLHL8Q9P2G9 620 aaPredicted RBP10.07□□□□□ -0.8
USP39-214ENST00000474572 SLC17A7Q9P2U7 560 aa10.07□□□□□ -0.8
USP39-214ENST00000474572 PHTF1Q9UMS5 762 aa10.07□□□□□ -0.8
USP39-214ENST00000474572 SNX10Q9Y5X0 201 aa10.07□□□□□ -0.8
USP39-214ENST00000474572 IKBKGQ9Y6K9 419 aa10.07□□□□□ -0.8
USP39-214ENST00000474572 WDR27A2RRH5 827 aa10.06□□□□□ -0.8
USP39-214ENST00000474572 OR6C75A6NL08 312 aa10.06□□□□□ -0.8
USP39-214ENST00000474572 KCNU1A8MYU2 1149 aa10.06□□□□□ -0.8
USP39-214ENST00000474572 KCNK1O00180 336 aa10.06□□□□□ -0.8
USP39-214ENST00000474572 PITPNM1O00562 1244 aa10.06□□□□□ -0.8
USP39-214ENST00000474572 KLF11O14901 512 aa10.06□□□□□ -0.8
USP39-214ENST00000474572 ZBTB24O43167 697 aaPredicted RBP10.06□□□□□ -0.8
USP39-214ENST00000474572 PSMD3O43242 534 aa10.06□□□□□ -0.8
USP39-214ENST00000474572 TBC1D4O60343 1298 aa10.06□□□□□ -0.8
USP39-214ENST00000474572 UGT1A9O60656 530 aa10.06□□□□□ -0.8
USP39-214ENST00000474572 LPXNO60711 386 aa10.06□□□□□ -0.8
USP39-214ENST00000474572 NBNO60934 754 aa10.06□□□□□ -0.8
USP39-214ENST00000474572 KRT38O76015 456 aa10.06□□□□□ -0.8
USP39-214ENST00000474572 OR4Q2P0C623 313 aa10.06□□□□□ -0.8
USP39-214ENST00000474572 FGFR3P22607 806 aa10.06□□□□□ -0.8
USP39-214ENST00000474572 CCNCP24863 283 aa10.06□□□□□ -0.8
USP39-214ENST00000474572 DNAJB2P25686 324 aa10.06□□□□□ -0.8
USP39-214ENST00000474572 EPHB2P29323 1055 aa10.06□□□□□ -0.8
USP39-214ENST00000474572 CCR1P32246 355 aa10.06□□□□□ -0.8
USP39-214ENST00000474572 MAP2K2P36507 400 aa10.06□□□□□ -0.8
USP39-214ENST00000474572 GRIK1P39086 918 aa10.06□□□□□ -0.8
USP39-214ENST00000474572 SCTRP47872 440 aa10.06□□□□□ -0.8
USP39-214ENST00000474572 OR1G1P47890 313 aa10.06□□□□□ -0.8
USP39-214ENST00000474572 PGFP49763 221 aa10.06□□□□□ -0.8
USP39-214ENST00000474572 COG7P83436 770 aa10.06□□□□□ -0.8
USP39-214ENST00000474572 BFSP2Q13515 415 aa10.06□□□□□ -0.8
USP39-214ENST00000474572 CRYMQ14894 314 aa10.06□□□□□ -0.8
USP39-214ENST00000474572 DBN1Q16643 649 aa10.06□□□□□ -0.8
USP39-214ENST00000474572 SLC39A12Q504Y0 691 aa10.06□□□□□ -0.8
USP39-214ENST00000474572 SPDYAQ5MJ70 313 aa10.06□□□□□ -0.8
USP39-214ENST00000474572 VARS2Q5ST30 1063 aaKnown RBP10.06□□□□□ -0.8
USP39-214ENST00000474572 ITPRIPL1Q6GPH6 555 aa10.06□□□□□ -0.8
USP39-214ENST00000474572 TMEM135Q86UB9 458 aa10.06□□□□□ -0.8
USP39-214ENST00000474572 CTAGE3PQ8IX95 158 aa10.06□□□□□ -0.8
USP39-214ENST00000474572 NUP93Q8N1F7 819 aa10.06□□□□□ -0.8
USP39-214ENST00000474572 ARHGAP18Q8N392 663 aa10.06□□□□□ -0.8
USP39-214ENST00000474572 MICALL1Q8N3F8 863 aa10.06□□□□□ -0.8
USP39-214ENST00000474572 GBP7Q8N8V2 638 aaPredicted RBP10.06□□□□□ -0.8
USP39-214ENST00000474572 NETO2Q8NC67 525 aa10.06□□□□□ -0.8
USP39-214ENST00000474572 ACMSDQ8TDX5 336 aa10.06□□□□□ -0.8
USP39-214ENST00000474572 C10orf82Q8WW14 230 aa10.06□□□□□ -0.8
USP39-214ENST00000474572 SPOCK2Q92563 424 aa10.06□□□□□ -0.8
USP39-214ENST00000474572 FATE1Q969F0 183 aa10.06□□□□□ -0.8
USP39-214ENST00000474572 ISL2Q96A47 359 aa10.06□□□□□ -0.8
USP39-214ENST00000474572 TBC1D31Q96DN5 1066 aa10.06□□□□□ -0.8
USP39-214ENST00000474572 SERPINB11Q96P15 392 aa10.06□□□□□ -0.8
USP39-214ENST00000474572 CASD1Q96PB1 797 aa10.06□□□□□ -0.8
USP39-214ENST00000474572 IL12RB2Q99665 862 aa10.06□□□□□ -0.8
USP39-214ENST00000474572 TRIM56Q9BRZ2 755 aaKnown RBP10.06□□□□□ -0.8
USP39-214ENST00000474572 MLPHQ9BV36 600 aaPredicted RBP10.06□□□□□ -0.8
USP39-214ENST00000474572 UGT1A7Q9HAW7 530 aa10.06□□□□□ -0.8
USP39-214ENST00000474572 UGT1A10Q9HAW8 530 aa10.06□□□□□ -0.8
USP39-214ENST00000474572 UGT1A8Q9HAW9 530 aa10.06□□□□□ -0.8
USP39-214ENST00000474572 RXFP1Q9HBX9 757 aa10.06□□□□□ -0.8
USP39-214ENST00000474572 COMMD8Q9NX08 183 aa10.06□□□□□ -0.8
USP39-214ENST00000474572 SYBUQ9NX95 663 aa10.06□□□□□ -0.8
USP39-214ENST00000474572 DNAJB4Q9UDY4 337 aa10.06□□□□□ -0.8
USP39-214ENST00000474572 ADAM28Q9UKQ2 775 aa10.06□□□□□ -0.8
USP39-214ENST00000474572 COL4A6Q14031 1691 aa10.06□□□□□ -0.8
USP39-214ENST00000474572 MICAL3Q7RTP6 2002 aa10.06□□□□□ -0.8
USP39-214ENST00000474572 MYLKQ15746 1914 aa10.05□□□□□ -0.8
USP39-214ENST00000474572 A0A1W2PQH9 124 aa10.05□□□□□ -0.8
USP39-214ENST00000474572 AP3B1O00203 1094 aa10.05□□□□□ -0.8
USP39-214ENST00000474572 ENPP3O14638 875 aa10.05□□□□□ -0.8
USP39-214ENST00000474572 PAGE1O75459 146 aa10.05□□□□□ -0.8
USP39-214ENST00000474572 TRPA1O75762 1119 aa10.05□□□□□ -0.8
USP39-214ENST00000474572 RASSF9O75901 435 aa10.05□□□□□ -0.8
USP39-214ENST00000474572 PYGBP11216 843 aa10.05□□□□□ -0.8
USP39-214ENST00000474572 NFKB1P19838 968 aa10.05□□□□□ -0.8
USP39-214ENST00000474572 GRK4P32298 578 aa10.05□□□□□ -0.8
USP39-214ENST00000474572 SKIV2L2P42285 1042 aaKnown RBP10.05□□□□□ -0.8
USP39-214ENST00000474572 NPY2RP49146 381 aa10.05□□□□□ -0.8
USP39-214ENST00000474572 SMARCB1Q12824 385 aa10.05□□□□□ -0.8
USP39-214ENST00000474572 STXBP5Q5T5C0 1151 aa10.05□□□□□ -0.8
USP39-214ENST00000474572 ZNF280DQ6N043 979 aa10.05□□□□□ -0.8
USP39-214ENST00000474572 PACS1Q6VY07 963 aa10.05□□□□□ -0.8
USP39-214ENST00000474572 CDHR3Q6ZTQ4 885 aa10.05□□□□□ -0.8
USP39-214ENST00000474572 OTOAQ7RTW8 1153 aa10.05□□□□□ -0.8
USP39-214ENST00000474572 MON1AQ86VX9 555 aa10.05□□□□□ -0.8
USP39-214ENST00000474572 LRRC49Q8IUZ0 686 aa10.05□□□□□ -0.8
USP39-214ENST00000474572 CCDC117Q8IWD4 279 aaPredicted RBP10.05□□□□□ -0.8
USP39-214ENST00000474572 ZNF683Q8IZ20 524 aa10.05□□□□□ -0.8
USP39-214ENST00000474572 ANKLE1Q8NAG6 615 aa10.05□□□□□ -0.8
USP39-214ENST00000474572 DBF4BQ8NFT6 615 aa10.05□□□□□ -0.8
USP39-214ENST00000474572 RAB3IL1Q8TBN0 382 aa10.05□□□□□ -0.8
USP39-214ENST00000474572 DEPDC1BQ8WUY9 529 aa10.05□□□□□ -0.8
USP39-214ENST00000474572 CDKL2Q92772 493 aa10.05□□□□□ -0.8
USP39-214ENST00000474572 C1orf74Q96LT6 269 aa10.05□□□□□ -0.8
USP39-214ENST00000474572 RMDN2Q96LZ7 410 aa10.05□□□□□ -0.8
USP39-214ENST00000474572 KLF6Q99612 283 aaPredicted RBP10.05□□□□□ -0.8
USP39-214ENST00000474572 PAIP2Q9BPZ3 127 aaKnown RBP10.05□□□□□ -0.8
USP39-214ENST00000474572 TMEM175Q9BSA9 504 aa10.05□□□□□ -0.8
USP39-214ENST00000474572 OXCT2Q9BYC2 517 aaPredicted RBP10.05□□□□□ -0.8
USP39-214ENST00000474572 CEP41Q9BYV8 373 aa10.05□□□□□ -0.8
USP39-214ENST00000474572 FBXO44Q9H4M3 255 aa10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms