RNA–Protein interactions for RNA: ENST00000474056.5

UPF3A-203, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 748 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-203ENST00000474056 HSPA12BQ96MM6 686 aa18.52■□□□□ 0.56
UPF3A-203ENST00000474056 RPRD1AQ96P16 312 aaPredicted RBP18.52■□□□□ 0.56
UPF3A-203ENST00000474056 FUCA2Q9BTY2 467 aa18.52■□□□□ 0.56
UPF3A-203ENST00000474056 PRSS16Q9NQE7 514 aa18.52■□□□□ 0.56
UPF3A-203ENST00000474056 ITM2CQ9NQX7 267 aa18.52■□□□□ 0.56
UPF3A-203ENST00000474056 ARHGEF38Q9NXL2 777 aa18.52■□□□□ 0.56
UPF3A-203ENST00000474056 WSB2Q9NYS7 404 aaPredicted RBP18.52■□□□□ 0.56
UPF3A-203ENST00000474056 KIAA1522Q9P206 1035 aaPredicted RBP18.52■□□□□ 0.56
UPF3A-203ENST00000474056 TMEM59LQ9UK28 342 aa18.52■□□□□ 0.56
UPF3A-203ENST00000474056 PILRBQ9UKJ0 227 aa18.52■□□□□ 0.56
UPF3A-203ENST00000474056 VANGL2Q9ULK5 521 aa18.52■□□□□ 0.56
UPF3A-203ENST00000474056 A0A1B0GVM2 712 aa18.51■□□□□ 0.55
UPF3A-203ENST00000474056 TCAF2A6NFQ2 919 aa18.51■□□□□ 0.55
UPF3A-203ENST00000474056 PAGE1O75459 146 aa18.51■□□□□ 0.55
UPF3A-203ENST00000474056 ASLP04424 464 aa18.51■□□□□ 0.55
UPF3A-203ENST00000474056 ACADMP11310 421 aa18.51■□□□□ 0.55
UPF3A-203ENST00000474056 CXCR3P49682 368 aa18.51■□□□□ 0.55
UPF3A-203ENST00000474056 TPMTP51580 245 aa18.51■□□□□ 0.55
UPF3A-203ENST00000474056 IRX4P78413 519 aa18.51■□□□□ 0.55
UPF3A-203ENST00000474056 DEUP1Q05D60 604 aa18.51■□□□□ 0.55
UPF3A-203ENST00000474056 TRIM61Q5EBN2 209 aa18.51■□□□□ 0.55
UPF3A-203ENST00000474056 TTC39BQ5VTQ0 682 aaPredicted RBP18.51■□□□□ 0.55
UPF3A-203ENST00000474056 C14orf80Q86SX3 495 aa18.51■□□□□ 0.55
UPF3A-203ENST00000474056 SLC30A5Q8TAD4 765 aa18.51■□□□□ 0.55
UPF3A-203ENST00000474056 CFAP57Q96MR6 1250 aa18.51■□□□□ 0.55
UPF3A-203ENST00000474056 PCDHB18PQ96TA0 734 aa18.51■□□□□ 0.55
UPF3A-203ENST00000474056 C11orf70Q9BRQ4 267 aa18.51■□□□□ 0.55
UPF3A-203ENST00000474056 TKTL2Q9H0I9 626 aa18.51■□□□□ 0.55
UPF3A-203ENST00000474056 METTL5Q9NRN9 209 aaKnown RBP18.51■□□□□ 0.55
UPF3A-203ENST00000474056 EVLQ9UI08 416 aaPredicted RBP18.51■□□□□ 0.55
UPF3A-203ENST00000474056 ERVW-1Q9UQF0 538 aa18.51■□□□□ 0.55
UPF3A-203ENST00000474056 SMTNL1A8MU46 457 aa18.5■□□□□ 0.55
UPF3A-203ENST00000474056 MOCS3O95396 460 aa18.5■□□□□ 0.55
UPF3A-203ENST00000474056 UNGP13051 313 aaPredicted RBP18.5■□□□□ 0.55
UPF3A-203ENST00000474056 PDGFRAP16234 1089 aa18.5■□□□□ 0.55
UPF3A-203ENST00000474056 MMP8P22894 467 aa18.5■□□□□ 0.55
UPF3A-203ENST00000474056 MZF1P28698 734 aaPredicted RBP18.5■□□□□ 0.55
UPF3A-203ENST00000474056 ST8SIA6P61647 398 aa18.5■□□□□ 0.55
UPF3A-203ENST00000474056 FOXK2Q01167 660 aa18.5■□□□□ 0.55
UPF3A-203ENST00000474056 SLC25A52Q3SY17 297 aa18.5■□□□□ 0.55
UPF3A-203ENST00000474056 BRMS1LQ5PSV4 323 aa18.5■□□□□ 0.55
UPF3A-203ENST00000474056 CXorf57Q6NSI4 855 aaKnown RBP18.5■□□□□ 0.55
UPF3A-203ENST00000474056 PHLDB2Q86SQ0 1253 aa18.5■□□□□ 0.55
UPF3A-203ENST00000474056 ZNF419Q96HQ0 510 aaPredicted RBP18.5■□□□□ 0.55
UPF3A-203ENST00000474056 SIK2Q9H0K1 926 aa18.5■□□□□ 0.55
UPF3A-203ENST00000474056 WDCPQ9H6R7 721 aa18.5■□□□□ 0.55
UPF3A-203ENST00000474056 TMPRSS4Q9NRS4 437 aa18.5■□□□□ 0.55
UPF3A-203ENST00000474056 SUN2Q9UH99 717 aa18.5■□□□□ 0.55
UPF3A-203ENST00000474056 SNX10Q9Y5X0 201 aa18.5■□□□□ 0.55
UPF3A-203ENST00000474056 TP53BP1Q12888 1972 aaPredicted RBP18.5■□□□□ 0.55
UPF3A-203ENST00000474056 GJB6O95452 261 aa18.49■□□□□ 0.55
UPF3A-203ENST00000474056 F9P00740 461 aa18.49■□□□□ 0.55
UPF3A-203ENST00000474056 IGLV3-19P01714 112 aa18.49■□□□□ 0.55
UPF3A-203ENST00000474056 DPP6P42658 865 aa18.49■□□□□ 0.55
UPF3A-203ENST00000474056 ZNF165P49910 485 aa18.49■□□□□ 0.55
UPF3A-203ENST00000474056 MTA1Q13330 715 aa18.49■□□□□ 0.55
UPF3A-203ENST00000474056 C5orf22Q49AR2 442 aa18.49■□□□□ 0.55
UPF3A-203ENST00000474056 IL31Q6EBC2 164 aa18.49■□□□□ 0.55
UPF3A-203ENST00000474056 TRIM72Q6ZMU5 477 aa18.49■□□□□ 0.55
UPF3A-203ENST00000474056 SND1Q7KZF4 910 aaKnown RBP eCLIP18.49■□□□□ 0.55
UPF3A-203ENST00000474056 BNIPLQ7Z465 357 aa18.49■□□□□ 0.55
UPF3A-203ENST00000474056 EMC1Q8N766 993 aa18.49■□□□□ 0.55
UPF3A-203ENST00000474056 OR52K2Q8NGK3 314 aa18.49■□□□□ 0.55
UPF3A-203ENST00000474056 RPL10LQ96L21 214 aaKnown RBP18.49■□□□□ 0.55
UPF3A-203ENST00000474056 GPR174Q9BXC1 333 aa18.49■□□□□ 0.55
UPF3A-203ENST00000474056 FBRSQ9HAH7 460 aa18.49■□□□□ 0.55
UPF3A-203ENST00000474056 CHD5Q8TDI0 1954 aa18.49■□□□□ 0.55
UPF3A-203ENST00000474056 C4orf47A7E2U8 309 aa18.48■□□□□ 0.55
UPF3A-203ENST00000474056 TTC34A8MYJ7 566 aa18.48■□□□□ 0.55
UPF3A-203ENST00000474056 TM4SF5O14894 197 aa18.48■□□□□ 0.55
UPF3A-203ENST00000474056 SIN3BO75182 1162 aa18.48■□□□□ 0.55
UPF3A-203ENST00000474056 CNTN5O94779 1100 aa18.48■□□□□ 0.55
UPF3A-203ENST00000474056 SRPRAP08240 638 aaKnown RBP18.48■□□□□ 0.55
UPF3A-203ENST00000474056 C7P10643 843 aa18.48■□□□□ 0.55
UPF3A-203ENST00000474056 HOXD12P35452 270 aa18.48■□□□□ 0.55
UPF3A-203ENST00000474056 STK19P49842 368 aaPredicted RBP18.48■□□□□ 0.55
UPF3A-203ENST00000474056 RPS14P62263 151 aaKnown RBP18.48■□□□□ 0.55
UPF3A-203ENST00000474056 ECT2LQ008S8 904 aa18.48■□□□□ 0.55
UPF3A-203ENST00000474056 PTP4A2Q12974 167 aa18.48■□□□□ 0.55
UPF3A-203ENST00000474056 SLC12A1Q13621 1099 aa18.48■□□□□ 0.55
UPF3A-203ENST00000474056 IQCB1Q15051 598 aa18.48■□□□□ 0.55
UPF3A-203ENST00000474056 CLEC16AQ2KHT3 1053 aa18.48■□□□□ 0.55
UPF3A-203ENST00000474056 KLHL40Q2TBA0 621 aa18.48■□□□□ 0.55
UPF3A-203ENST00000474056 HNRNPA1L2Q32P51 320 aaKnown RBP18.48■□□□□ 0.55
UPF3A-203ENST00000474056 RAB6CQ53S08 254 aa18.48■□□□□ 0.55
UPF3A-203ENST00000474056 SLC23A3Q6PIS1 610 aa18.48■□□□□ 0.55
UPF3A-203ENST00000474056 ARCQ7LC44 396 aa18.48■□□□□ 0.55
UPF3A-203ENST00000474056 FAM124AQ86V42 546 aa18.48■□□□□ 0.55
UPF3A-203ENST00000474056 RGL4Q8IZJ4 473 aa18.48■□□□□ 0.55
UPF3A-203ENST00000474056 KDM1BQ8NB78 822 aa18.48■□□□□ 0.55
UPF3A-203ENST00000474056 NUSAP1Q9BXS6 441 aaKnown RBP18.48■□□□□ 0.55
UPF3A-203ENST00000474056 RAB6CQ9H0N0 254 aa18.48■□□□□ 0.55
UPF3A-203ENST00000474056 RTN4Q9NQC3 1192 aaKnown RBP18.48■□□□□ 0.55
UPF3A-203ENST00000474056 FSCN3Q9NQT6 498 aa18.48■□□□□ 0.55
UPF3A-203ENST00000474056 SLCO3A1Q9UIG8 710 aa18.48■□□□□ 0.55
UPF3A-203ENST00000474056 ITIH6Q6UXX5 1313 aa18.48■□□□□ 0.55
UPF3A-203ENST00000474056 NCOR2Q9Y618 2525 aa18.47■□□□□ 0.55
UPF3A-203ENST00000474056 SYCE3A1L190 88 aa18.47■□□□□ 0.55
UPF3A-203ENST00000474056 CDX4O14627 284 aaPredicted RBP18.47■□□□□ 0.55
UPF3A-203ENST00000474056 CFIP05156 583 aa18.47■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms