RNA–Protein interactions for RNA: ENST00000473373.1

CPNE1-222, Transcript of copine 1, human

TSL 2

Gene CPNE1, Length 821 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPNE1-222	ENST00000473373	SLC25A13	Q9UJS0	675 aa		11.9	□□□□□ -0.5
CPNE1-222	ENST00000473373	RALY	Q9UKM9	306 aa	Known RBP	11.9	□□□□□ -0.5
CPNE1-222	ENST00000473373	HCN2	Q9UL51	889 aa		11.9	□□□□□ -0.5
CPNE1-222	ENST00000473373	NUMA1	Q14980	2115 aa		11.9	□□□□□ -0.5
CPNE1-222	ENST00000473373	TPR	P12270	2363 aa	Known RBP	11.89	□□□□□ -0.51
CPNE1-222	ENST00000473373	ZFHX4	Q86UP3	3567 aa		11.89	□□□□□ -0.51
CPNE1-222	ENST00000473373	IGHV1OR15-9	A0A0B4J2B8	117 aa		11.89	□□□□□ -0.51
CPNE1-222	ENST00000473373	SRGAP2	O75044	1071 aa		11.89	□□□□□ -0.51
CPNE1-222	ENST00000473373	PAGE1	O75459	146 aa		11.89	□□□□□ -0.51
CPNE1-222	ENST00000473373	IGLV3-25	P01717	112 aa		11.89	□□□□□ -0.51
CPNE1-222	ENST00000473373	CALB1	P05937	261 aa		11.89	□□□□□ -0.51
CPNE1-222	ENST00000473373	GNS	P15586	552 aa		11.89	□□□□□ -0.51
CPNE1-222	ENST00000473373	TNFAIP3	P21580	790 aa		11.89	□□□□□ -0.51
CPNE1-222	ENST00000473373	CD6	P30203	668 aa		11.89	□□□□□ -0.51
CPNE1-222	ENST00000473373	OXTR	P30559	389 aa		11.89	□□□□□ -0.51
CPNE1-222	ENST00000473373	SDC4	P31431	198 aa		11.89	□□□□□ -0.51
CPNE1-222	ENST00000473373	RDX	P35241	583 aa	Known RBP	11.89	□□□□□ -0.51
CPNE1-222	ENST00000473373	SCNN1A	P37088	669 aa		11.89	□□□□□ -0.51
CPNE1-222	ENST00000473373	GABRB2	P47870	512 aa		11.89	□□□□□ -0.51
CPNE1-222	ENST00000473373	FMO1	Q01740	532 aa		11.89	□□□□□ -0.51
CPNE1-222	ENST00000473373	CENPC	Q03188	943 aa		11.89	□□□□□ -0.51
CPNE1-222	ENST00000473373	ZNF33A	Q06730	810 aa		11.89	□□□□□ -0.51
CPNE1-222	ENST00000473373	SFSWAP	Q12872	951 aa	Known RBP	11.89	□□□□□ -0.51
CPNE1-222	ENST00000473373	AUH	Q13825	339 aa	Known RBP	11.89	□□□□□ -0.51
CPNE1-222	ENST00000473373	NCAPH	Q15003	741 aa		11.89	□□□□□ -0.51
CPNE1-222	ENST00000473373	ASIC2	Q16515	512 aa		11.89	□□□□□ -0.51
CPNE1-222	ENST00000473373	ARL13B	Q3SXY8	428 aa		11.89	□□□□□ -0.51
CPNE1-222	ENST00000473373	SLC25A52	Q3SY17	297 aa		11.89	□□□□□ -0.51
CPNE1-222	ENST00000473373	TRIM61	Q5EBN2	209 aa		11.89	□□□□□ -0.51
CPNE1-222	ENST00000473373	PITRM1	Q5JRX3	1037 aa		11.89	□□□□□ -0.51
CPNE1-222	ENST00000473373	TCEAL6	Q6IPX3	200 aa		11.89	□□□□□ -0.51
CPNE1-222	ENST00000473373	DPY19L2P1	Q6NXN4	242 aa		11.89	□□□□□ -0.51
CPNE1-222	ENST00000473373	ADIPOR2	Q86V24	386 aa		11.89	□□□□□ -0.51
CPNE1-222	ENST00000473373	SYT12	Q8IV01	421 aa		11.89	□□□□□ -0.51
CPNE1-222	ENST00000473373	DHX40	Q8IX18	779 aa	Known RBP	11.89	□□□□□ -0.51
CPNE1-222	ENST00000473373	DDX51	Q8N8A6	666 aa	Known RBP eCLIP	11.89	□□□□□ -0.51
CPNE1-222	ENST00000473373	OR2T3	Q8NH03	318 aa		11.89	□□□□□ -0.51
CPNE1-222	ENST00000473373	DDX1	Q92499	740 aa	Known RBP	11.89	□□□□□ -0.51
CPNE1-222	ENST00000473373	FOXJ1	Q92949	421 aa		11.89	□□□□□ -0.51
CPNE1-222	ENST00000473373	TCEAL3	Q969E4	200 aa		11.89	□□□□□ -0.51
CPNE1-222	ENST00000473373	GPR174	Q9BXC1	333 aa		11.89	□□□□□ -0.51
CPNE1-222	ENST00000473373	MIR1-1HG	Q9H1L0	117 aa		11.89	□□□□□ -0.51
CPNE1-222	ENST00000473373	FBRS	Q9HAH7	460 aa		11.89	□□□□□ -0.51
CPNE1-222	ENST00000473373	PIGV	Q9NUD9	493 aa		11.89	□□□□□ -0.51
CPNE1-222	ENST00000473373	TMEM51	Q9NW97	253 aa		11.89	□□□□□ -0.51
CPNE1-222	ENST00000473373	ADAM22	Q9P0K1	906 aa		11.89	□□□□□ -0.51
CPNE1-222	ENST00000473373	MBD1	Q9UIS9	605 aa	Predicted RBP	11.89	□□□□□ -0.51
CPNE1-222	ENST00000473373	NOCT	Q9UK39	431 aa	Known RBP	11.89	□□□□□ -0.51
CPNE1-222	ENST00000473373	VPS28	Q9UK41	221 aa		11.89	□□□□□ -0.51
CPNE1-222	ENST00000473373	NCKAP1	Q9Y2A7	1128 aa		11.89	□□□□□ -0.51
CPNE1-222	ENST00000473373	TEX33	O43247	280 aa		11.88	□□□□□ -0.51
CPNE1-222	ENST00000473373	BNIP3L	O60238	219 aa		11.88	□□□□□ -0.51
CPNE1-222	ENST00000473373	RHOC	P08134	193 aa		11.88	□□□□□ -0.51
CPNE1-222	ENST00000473373	CHRM1	P11229	460 aa	Predicted RBP	11.88	□□□□□ -0.51
CPNE1-222	ENST00000473373	ITPKA	P23677	461 aa		11.88	□□□□□ -0.51
CPNE1-222	ENST00000473373	FLT3	P36888	993 aa		11.88	□□□□□ -0.51
CPNE1-222	ENST00000473373	PTGER3	P43115	390 aa		11.88	□□□□□ -0.51
CPNE1-222	ENST00000473373	ECT2L	Q008S8	904 aa		11.88	□□□□□ -0.51
CPNE1-222	ENST00000473373	SULT2A1	Q06520	285 aa		11.88	□□□□□ -0.51
CPNE1-222	ENST00000473373	SLC12A1	Q13621	1099 aa		11.88	□□□□□ -0.51
CPNE1-222	ENST00000473373	UAP1L1	Q3KQV9	507 aa		11.88	□□□□□ -0.51
CPNE1-222	ENST00000473373	FSCB	Q5H9T9	825 aa		11.88	□□□□□ -0.51
CPNE1-222	ENST00000473373	WDR45B	Q5MNZ6	344 aa		11.88	□□□□□ -0.51
CPNE1-222	ENST00000473373	N4BP2L1	Q5TBK1	243 aa	Predicted RBP	11.88	□□□□□ -0.51
CPNE1-222	ENST00000473373	ZNF776	Q68DI1	518 aa	Predicted RBP	11.88	□□□□□ -0.51
CPNE1-222	ENST00000473373	FBXL22	Q6P050	247 aa		11.88	□□□□□ -0.51
CPNE1-222	ENST00000473373	DNAJC24	Q6P3W2	148 aa		11.88	□□□□□ -0.51
CPNE1-222	ENST00000473373	RABEPK	Q7Z6M1	372 aa		11.88	□□□□□ -0.51
CPNE1-222	ENST00000473373	FAM131B	Q86XD5	332 aa		11.88	□□□□□ -0.51
CPNE1-222	ENST00000473373	EMC1	Q8N766	993 aa		11.88	□□□□□ -0.51
CPNE1-222	ENST00000473373	MYEOV	Q96EZ4	313 aa		11.88	□□□□□ -0.51
CPNE1-222	ENST00000473373	TOE1	Q96GM8	510 aa	Known RBP	11.88	□□□□□ -0.51
CPNE1-222	ENST00000473373	RPL10L	Q96L21	214 aa	Known RBP	11.88	□□□□□ -0.51
CPNE1-222	ENST00000473373	NPY6R	Q99463	290 aa		11.88	□□□□□ -0.51
CPNE1-222	ENST00000473373	AGPAT1	Q99943	283 aa		11.88	□□□□□ -0.51
CPNE1-222	ENST00000473373	NUP58	Q9BVL2	599 aa		11.88	□□□□□ -0.51
CPNE1-222	ENST00000473373	GTPBP2	Q9BX10	602 aa	Known RBP	11.88	□□□□□ -0.51
CPNE1-222	ENST00000473373	MKRN2	Q9H000	416 aa	Known RBP	11.88	□□□□□ -0.51
CPNE1-222	ENST00000473373	CD93	Q9NPY3	652 aa		11.88	□□□□□ -0.51
CPNE1-222	ENST00000473373	ERVW-1	Q9UQF0	538 aa		11.88	□□□□□ -0.51
CPNE1-222	ENST00000473373	HS3ST4	Q9Y661	456 aa		11.88	□□□□□ -0.51
CPNE1-222	ENST00000473373	EDDM13	A0A1B0GTR0	161 aa		11.87	□□□□□ -0.51
CPNE1-222	ENST00000473373	FAM47DP	A6NHR8	397 aa		11.87	□□□□□ -0.51
CPNE1-222	ENST00000473373	TMCO5B	A8MYB1	307 aa		11.87	□□□□□ -0.51
CPNE1-222	ENST00000473373	PATE3	B3GLJ2	98 aa		11.87	□□□□□ -0.51
CPNE1-222	ENST00000473373	CLDN11	O75508	207 aa		11.87	□□□□□ -0.51
CPNE1-222	ENST00000473373	ADCY5	O95622	1261 aa		11.87	□□□□□ -0.51
CPNE1-222	ENST00000473373	CYP1A1	P04798	512 aa	Predicted RBP	11.87	□□□□□ -0.51
CPNE1-222	ENST00000473373	SRPRA	P08240	638 aa	Known RBP	11.87	□□□□□ -0.51
CPNE1-222	ENST00000473373	KRT3	P12035	628 aa		11.87	□□□□□ -0.51
CPNE1-222	ENST00000473373	TFE3	P19532	575 aa	Predicted RBP	11.87	□□□□□ -0.51
CPNE1-222	ENST00000473373	MAPK8	P45983	427 aa		11.87	□□□□□ -0.51
CPNE1-222	ENST00000473373	TPMT	P51580	245 aa		11.87	□□□□□ -0.51
CPNE1-222	ENST00000473373	CDH4	P55283	916 aa		11.87	□□□□□ -0.51
CPNE1-222	ENST00000473373	KRT83	P78385	493 aa		11.87	□□□□□ -0.51
CPNE1-222	ENST00000473373	GFPT1	Q06210	699 aa	Predicted RBP	11.87	□□□□□ -0.51
CPNE1-222	ENST00000473373	CAMK2G	Q13555	558 aa	Predicted RBP	11.87	□□□□□ -0.51
CPNE1-222	ENST00000473373	DUOXA1	Q1HG43	343 aa		11.87	□□□□□ -0.51
CPNE1-222	ENST00000473373	CLEC16A	Q2KHT3	1053 aa		11.87	□□□□□ -0.51
CPNE1-222	ENST00000473373	SKOR2	Q2VWA4	1001 aa	Predicted RBP	11.87	□□□□□ -0.51

Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms