RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 CFAP58Q5T655 872 aa13.18□□□□□ -0.3
VPS13D-205ENST00000473099 TTC39BQ5VTQ0 682 aaPredicted RBP13.18□□□□□ -0.3
VPS13D-205ENST00000473099 ALS2CLQ60I27 953 aa13.18□□□□□ -0.3
VPS13D-205ENST00000473099 PPP2R2DQ66LE6 453 aa13.18□□□□□ -0.3
VPS13D-205ENST00000473099 TIGD7Q6NT04 549 aaPredicted RBP13.18□□□□□ -0.3
VPS13D-205ENST00000473099 TMC3Q7Z5M5 1100 aa13.18□□□□□ -0.3
VPS13D-205ENST00000473099 ZNF683Q8IZ20 524 aa13.18□□□□□ -0.3
VPS13D-205ENST00000473099 TDHQ8IZJ6 230 aa13.18□□□□□ -0.3
VPS13D-205ENST00000473099 UMODL1-AS1Q8N2C9 162 aa13.18□□□□□ -0.3
VPS13D-205ENST00000473099 CCNYQ8ND76 341 aa13.18□□□□□ -0.3
VPS13D-205ENST00000473099 CDCA3Q99618 268 aaPredicted RBP13.18□□□□□ -0.3
VPS13D-205ENST00000473099 PBX4Q9BYU1 374 aa13.18□□□□□ -0.3
VPS13D-205ENST00000473099 NEUROG2Q9H2A3 272 aa13.18□□□□□ -0.3
VPS13D-205ENST00000473099 FAM153AQ9UHL3 310 aa13.18□□□□□ -0.3
VPS13D-205ENST00000473099 VANGL2Q9ULK5 521 aa13.18□□□□□ -0.3
VPS13D-205ENST00000473099 SNX10Q9Y5X0 201 aa13.18□□□□□ -0.3
VPS13D-205ENST00000473099 MYOFQ9NZM1 2061 aa13.17□□□□□ -0.3
VPS13D-205ENST00000473099 A0A0A0MRY4 1105 aa13.17□□□□□ -0.3
VPS13D-205ENST00000473099 C2orf78A6NCI8 922 aa13.17□□□□□ -0.3
VPS13D-205ENST00000473099 CHADO15335 359 aa13.17□□□□□ -0.3
VPS13D-205ENST00000473099 EIF3HO15372 352 aaKnown RBP eCLIP13.17□□□□□ -0.3
VPS13D-205ENST00000473099 CCNCP24863 283 aa13.17□□□□□ -0.3
VPS13D-205ENST00000473099 CORO1AP31146 461 aaKnown RBP13.17□□□□□ -0.3
VPS13D-205ENST00000473099 IRS1P35568 1242 aa13.17□□□□□ -0.3
VPS13D-205ENST00000473099 GGCXP38435 758 aa13.17□□□□□ -0.3
VPS13D-205ENST00000473099 KCNQ1P51787 676 aa13.17□□□□□ -0.3
VPS13D-205ENST00000473099 YBEYP58557 167 aaPredicted RBP13.17□□□□□ -0.3
VPS13D-205ENST00000473099 ADGRF1Q5T601 910 aa13.17□□□□□ -0.3
VPS13D-205ENST00000473099 RNASEH2BQ5TBB1 312 aaKnown RBP13.17□□□□□ -0.3
VPS13D-205ENST00000473099 AFMIDQ63HM1 303 aa13.17□□□□□ -0.3
VPS13D-205ENST00000473099 RAP1GAP2Q684P5 730 aa13.17□□□□□ -0.3
VPS13D-205ENST00000473099 FBXL22Q6P050 247 aa13.17□□□□□ -0.3
VPS13D-205ENST00000473099 ARHGEF18Q6ZSZ5 1173 aa13.17□□□□□ -0.3
VPS13D-205ENST00000473099 GAREM2Q75VX8 874 aa13.17□□□□□ -0.3
VPS13D-205ENST00000473099 NLRP14Q86W24 1093 aa13.17□□□□□ -0.3
VPS13D-205ENST00000473099 ZCCHC9Q8N567 271 aaKnown RBP13.17□□□□□ -0.3
VPS13D-205ENST00000473099 ATPAF2Q8N5M1 289 aa13.17□□□□□ -0.3
VPS13D-205ENST00000473099 NPWQ8N729 165 aa13.17□□□□□ -0.3
VPS13D-205ENST00000473099 GLIS1Q8NBF1 620 aa13.17□□□□□ -0.3
VPS13D-205ENST00000473099 FATE1Q969F0 183 aa13.17□□□□□ -0.3
VPS13D-205ENST00000473099 SPATA13Q96N96 652 aa13.17□□□□□ -0.3
VPS13D-205ENST00000473099 RPRD1AQ96P16 312 aaPredicted RBP13.17□□□□□ -0.3
VPS13D-205ENST00000473099 PPP1R2P1Q96PQ5 205 aa13.17□□□□□ -0.3
VPS13D-205ENST00000473099 CORO1BQ9BR76 489 aa13.17□□□□□ -0.3
VPS13D-205ENST00000473099 RNF38Q9H0F5 515 aa13.17□□□□□ -0.3
VPS13D-205ENST00000473099 ADAM7Q9H2U9 754 aa13.17□□□□□ -0.3
VPS13D-205ENST00000473099 ATXN3LQ9H3M9 355 aa13.17□□□□□ -0.3
VPS13D-205ENST00000473099 SLC28A3Q9HAS3 691 aa13.17□□□□□ -0.3
VPS13D-205ENST00000473099 TRPC7Q9HCX4 862 aa13.17□□□□□ -0.3
VPS13D-205ENST00000473099 XPO7Q9UIA9 1087 aaKnown RBP13.17□□□□□ -0.3
VPS13D-205ENST00000473099 STOML2Q9UJZ1 356 aa13.17□□□□□ -0.3
VPS13D-205ENST00000473099 TRHDEQ9UKU6 1024 aa13.17□□□□□ -0.3
VPS13D-205ENST00000473099 MFHAS1Q9Y4C4 1052 aa13.17□□□□□ -0.3
VPS13D-205ENST00000473099 FARP1Q9Y4F1 1045 aaPredicted RBP13.17□□□□□ -0.3
VPS13D-205ENST00000473099 LAMA2P24043 3122 aaKnown RBP13.17□□□□□ -0.3
VPS13D-205ENST00000473099 TYW5A2RUC4 315 aaKnown RBP13.16□□□□□ -0.3
VPS13D-205ENST00000473099 ARHGAP42A6NI28 874 aa13.16□□□□□ -0.3
VPS13D-205ENST00000473099 SPDYE4A6NLX3 237 aa13.16□□□□□ -0.3
VPS13D-205ENST00000473099 ZNF197O14709 1029 aa13.16□□□□□ -0.3
VPS13D-205ENST00000473099 CCL16O15467 120 aa13.16□□□□□ -0.3
VPS13D-205ENST00000473099 MAP3K6O95382 1288 aa13.16□□□□□ -0.3
VPS13D-205ENST00000473099 PAPLNO95428 1278 aa13.16□□□□□ -0.3
VPS13D-205ENST00000473099 CKMP06732 381 aa13.16□□□□□ -0.3
VPS13D-205ENST00000473099 ZSCAN5DPP0CG00 497 aa13.16□□□□□ -0.3
VPS13D-205ENST00000473099 MYL4P12829 197 aa13.16□□□□□ -0.3
VPS13D-205ENST00000473099 ETS1P14921 441 aa13.16□□□□□ -0.3
VPS13D-205ENST00000473099 MAGEA6P43360 314 aa13.16□□□□□ -0.3
VPS13D-205ENST00000473099 BASP1P80723 227 aaKnown RBP13.16□□□□□ -0.3
VPS13D-205ENST00000473099 SMAD3P84022 425 aaKnown RBP13.16□□□□□ -0.3
VPS13D-205ENST00000473099 CDK16Q00536 496 aa13.16□□□□□ -0.3
VPS13D-205ENST00000473099 DHX9Q08211 1270 aaKnown RBP13.16□□□□□ -0.3
VPS13D-205ENST00000473099 ANO4Q32M45 955 aa13.16□□□□□ -0.3
VPS13D-205ENST00000473099 PARP15Q460N3 678 aa13.16□□□□□ -0.3
VPS13D-205ENST00000473099 ANKRD20A2Q5SQ80 823 aa13.16□□□□□ -0.3
VPS13D-205ENST00000473099 ANKRD20A1Q5TYW2 823 aa13.16□□□□□ -0.3
VPS13D-205ENST00000473099 ANKRD20A3Q5VUR7 823 aa13.16□□□□□ -0.3
VPS13D-205ENST00000473099 ITPRIPL1Q6GPH6 555 aa13.16□□□□□ -0.3
VPS13D-205ENST00000473099 TRMT10CQ7L0Y3 403 aaKnown RBP13.16□□□□□ -0.3
VPS13D-205ENST00000473099 CHST9Q7L1S5 443 aa13.16□□□□□ -0.3
VPS13D-205ENST00000473099 C14orf80Q86SX3 495 aa13.16□□□□□ -0.3
VPS13D-205ENST00000473099 RELL1Q8IUW5 271 aa13.16□□□□□ -0.3
VPS13D-205ENST00000473099 CCDC13Q8IYE1 715 aa13.16□□□□□ -0.3
VPS13D-205ENST00000473099 EXOC4Q96A65 974 aa13.16□□□□□ -0.3
VPS13D-205ENST00000473099 P2RY11Q96G91 374 aa13.16□□□□□ -0.3
VPS13D-205ENST00000473099 LRCH3Q96II8 777 aa13.16□□□□□ -0.3
VPS13D-205ENST00000473099 RUFY1Q96T51 708 aa13.16□□□□□ -0.3
VPS13D-205ENST00000473099 LGMNQ99538 433 aa13.16□□□□□ -0.3
VPS13D-205ENST00000473099 TXLNGYQ9BZA5 131 aa13.16□□□□□ -0.3
VPS13D-205ENST00000473099 PRKD2Q9BZL6 878 aa13.16□□□□□ -0.3
VPS13D-205ENST00000473099 NKX2-4Q9H2Z4 354 aa13.16□□□□□ -0.3
VPS13D-205ENST00000473099 TLE6Q9H808 572 aa13.16□□□□□ -0.3
VPS13D-205ENST00000473099 DZANK1Q9NVP4 752 aa13.16□□□□□ -0.3
VPS13D-205ENST00000473099 HPCAL4Q9UM19 191 aa13.16□□□□□ -0.3
VPS13D-205ENST00000473099 A0A1B0GVM2 712 aa13.15□□□□□ -0.3
VPS13D-205ENST00000473099 GOLGA6CA6NDK9 693 aa13.15□□□□□ -0.3
VPS13D-205ENST00000473099 GOLGA6BA6NDN3 693 aa13.15□□□□□ -0.3
VPS13D-205ENST00000473099 TCAF2A6NFQ2 919 aa13.15□□□□□ -0.3
VPS13D-205ENST00000473099 RNF103O00237 685 aa13.15□□□□□ -0.3
VPS13D-205ENST00000473099 SOX1O00570 391 aaPredicted RBP13.15□□□□□ -0.3
VPS13D-205ENST00000473099 TP73O15350 636 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms