RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 WBP1Q96G27 269 aa12.39□□□□□ -0.43
SQSTM1-206ENST00000466342 CDK5RAP1Q96SZ6 601 aaKnown RBP12.39□□□□□ -0.43
SQSTM1-206ENST00000466342 NUCKS1Q9H1E3 243 aaKnown RBP12.39□□□□□ -0.43
SQSTM1-206ENST00000466342 SPHK2Q9NRA0 654 aa12.39□□□□□ -0.43
SQSTM1-206ENST00000466342 MTPAPQ9NVV4 582 aaKnown RBP eCLIP12.39□□□□□ -0.43
SQSTM1-206ENST00000466342 OSER1Q9NX31 292 aa12.39□□□□□ -0.43
SQSTM1-206ENST00000466342 DNMT3LQ9UJW3 386 aa12.39□□□□□ -0.43
SQSTM1-206ENST00000466342 NAGPAQ9UK23 515 aa12.39□□□□□ -0.43
SQSTM1-206ENST00000466342 CAPN11Q9UMQ6 739 aa12.39□□□□□ -0.43
SQSTM1-206ENST00000466342 KNL1Q8NG31 2342 aa12.38□□□□□ -0.43
SQSTM1-206ENST00000466342 A0A1W2PQF6 199 aa12.38□□□□□ -0.43
SQSTM1-206ENST00000466342 TBC1D3BA6NDS4 549 aa12.38□□□□□ -0.43
SQSTM1-206ENST00000466342 B8ZZF3 427 aa12.38□□□□□ -0.43
SQSTM1-206ENST00000466342 E5RJQ4 531 aa12.38□□□□□ -0.43
SQSTM1-206ENST00000466342 SCAMP3O14828 347 aaKnown RBP12.38□□□□□ -0.43
SQSTM1-206ENST00000466342 HOXC11O43248 304 aaPredicted RBP12.38□□□□□ -0.43
SQSTM1-206ENST00000466342 SART1O43290 800 aaKnown RBP12.38□□□□□ -0.43
SQSTM1-206ENST00000466342 TNFSF14O43557 240 aa12.38□□□□□ -0.43
SQSTM1-206ENST00000466342 GREM1O60565 184 aa12.38□□□□□ -0.43
SQSTM1-206ENST00000466342 WISP1O95388 367 aa12.38□□□□□ -0.43
SQSTM1-206ENST00000466342 CYP1A1P04798 512 aaPredicted RBP12.38□□□□□ -0.43
SQSTM1-206ENST00000466342 RALAP11233 206 aa12.38□□□□□ -0.43
SQSTM1-206ENST00000466342 NTSR1P30989 418 aa12.38□□□□□ -0.43
SQSTM1-206ENST00000466342 PRKCIP41743 596 aa12.38□□□□□ -0.43
SQSTM1-206ENST00000466342 YWHAGP61981 247 aaKnown RBP eCLIP12.38□□□□□ -0.43
SQSTM1-206ENST00000466342 NOMO3P69849 1222 aa12.38□□□□□ -0.43
SQSTM1-206ENST00000466342 ZBED6P86452 979 aa12.38□□□□□ -0.43
SQSTM1-206ENST00000466342 SEMG2Q02383 582 aa12.38□□□□□ -0.43
SQSTM1-206ENST00000466342 KDSRQ06136 332 aa12.38□□□□□ -0.43
SQSTM1-206ENST00000466342 SUZ12Q15022 739 aaKnown RBP12.38□□□□□ -0.43
SQSTM1-206ENST00000466342 PTPRNQ16849 979 aa12.38□□□□□ -0.43
SQSTM1-206ENST00000466342 HLA-BQ31612 363 aa12.38□□□□□ -0.43
SQSTM1-206ENST00000466342 PTPN20Q4JDL3 420 aa12.38□□□□□ -0.43
SQSTM1-206ENST00000466342 TAF1BQ53T94 588 aaPredicted RBP12.38□□□□□ -0.43
SQSTM1-206ENST00000466342 E4F1Q66K89 784 aaPredicted RBP12.38□□□□□ -0.43
SQSTM1-206ENST00000466342 BBS7Q8IWZ6 715 aa12.38□□□□□ -0.43
SQSTM1-206ENST00000466342 PHTF2Q8N3S3 785 aa12.38□□□□□ -0.43
SQSTM1-206ENST00000466342 FAM181AQ8N9Y4 354 aa12.38□□□□□ -0.43
SQSTM1-206ENST00000466342 IPO4Q8TEX9 1081 aaKnown RBP12.38□□□□□ -0.43
SQSTM1-206ENST00000466342 CLEC4CQ8WTT0 213 aa12.38□□□□□ -0.43
SQSTM1-206ENST00000466342 CPLX3Q8WVH0 158 aa12.38□□□□□ -0.43
SQSTM1-206ENST00000466342 NDRG1Q92597 394 aaKnown RBP12.38□□□□□ -0.43
SQSTM1-206ENST00000466342 WBP2Q969T9 261 aa12.38□□□□□ -0.43
SQSTM1-206ENST00000466342 PPP1R13BQ96KQ4 1090 aa12.38□□□□□ -0.43
SQSTM1-206ENST00000466342 CPXM1Q96SM3 734 aa12.38□□□□□ -0.43
SQSTM1-206ENST00000466342 MIS12Q9H081 205 aa12.38□□□□□ -0.43
SQSTM1-206ENST00000466342 DEC1Q9P2X7 70 aa12.38□□□□□ -0.43
SQSTM1-206ENST00000466342 LSM7Q9UK45 103 aaKnown RBP12.38□□□□□ -0.43
SQSTM1-206ENST00000466342 FNDC3AQ9Y2H6 1198 aaKnown RBP12.38□□□□□ -0.43
SQSTM1-206ENST00000466342 LUC7L2Q9Y383 392 aaKnown RBP12.38□□□□□ -0.43
SQSTM1-206ENST00000466342 COL12A1Q99715 3063 aa12.38□□□□□ -0.43
SQSTM1-206ENST00000466342 YJEFN3A6XGL0 299 aa12.37□□□□□ -0.43
SQSTM1-206ENST00000466342 E7ENQ6 273 aa12.37□□□□□ -0.43
SQSTM1-206ENST00000466342 PAPSS1O43252 624 aaPredicted RBP12.37□□□□□ -0.43
SQSTM1-206ENST00000466342 ERBB2P04626 1255 aa12.37□□□□□ -0.43
SQSTM1-206ENST00000466342 IRF1P10914 325 aa12.37□□□□□ -0.43
SQSTM1-206ENST00000466342 NDUFV2P19404 249 aa12.37□□□□□ -0.43
SQSTM1-206ENST00000466342 CASP14P31944 242 aa12.37□□□□□ -0.43
SQSTM1-206ENST00000466342 SNX16P57768 344 aa12.37□□□□□ -0.43
SQSTM1-206ENST00000466342 COG7P83436 770 aa12.37□□□□□ -0.43
SQSTM1-206ENST00000466342 C10orf120Q5SQS8 335 aa12.37□□□□□ -0.43
SQSTM1-206ENST00000466342 C6orf118Q5T5N4 469 aa12.37□□□□□ -0.43
SQSTM1-206ENST00000466342 NAA35Q5VZE5 725 aa12.37□□□□□ -0.43
SQSTM1-206ENST00000466342 DHRS13Q6UX07 377 aa12.37□□□□□ -0.43
SQSTM1-206ENST00000466342 TMEM25Q86YD3 366 aa12.37□□□□□ -0.43
SQSTM1-206ENST00000466342 ETFBKMTQ8IXQ9 262 aa12.37□□□□□ -0.43
SQSTM1-206ENST00000466342 SYN2Q92777 582 aaPredicted RBP12.37□□□□□ -0.43
SQSTM1-206ENST00000466342 AGPAT1Q99943 283 aa12.37□□□□□ -0.43
SQSTM1-206ENST00000466342 SYT11Q9BT88 431 aa12.37□□□□□ -0.43
SQSTM1-206ENST00000466342 ABCC13Q9NSE7 274 aa12.37□□□□□ -0.43
SQSTM1-206ENST00000466342 WDR35Q9P2L0 1181 aa12.37□□□□□ -0.43
SQSTM1-206ENST00000466342 TJP2Q9UDY2 1190 aa12.37□□□□□ -0.43
SQSTM1-206ENST00000466342 BTBD3Q9Y2F9 522 aa12.37□□□□□ -0.43
SQSTM1-206ENST00000466342 PYCARD-AS1I3L0S3 204 aa12.36□□□□□ -0.43
SQSTM1-206ENST00000466342 TULP3O75386 442 aa12.36□□□□□ -0.43
SQSTM1-206ENST00000466342 LTFP02788 710 aa12.36□□□□□ -0.43
SQSTM1-206ENST00000466342 TPM1P09493 284 aa12.36□□□□□ -0.43
SQSTM1-206ENST00000466342 UNGP13051 313 aaPredicted RBP12.36□□□□□ -0.43
SQSTM1-206ENST00000466342 WASP42768 502 aa12.36□□□□□ -0.43
SQSTM1-206ENST00000466342 ZNF75DP51815 510 aa12.36□□□□□ -0.43
SQSTM1-206ENST00000466342 BNC1Q01954 994 aa12.36□□□□□ -0.43
SQSTM1-206ENST00000466342 KLHL30Q0D2K2 578 aa12.36□□□□□ -0.43
SQSTM1-206ENST00000466342 ANO4Q32M45 955 aa12.36□□□□□ -0.43
SQSTM1-206ENST00000466342 BSPRYQ5W0U4 402 aa12.36□□□□□ -0.43
SQSTM1-206ENST00000466342 SDE2Q6IQ49 451 aa12.36□□□□□ -0.43
SQSTM1-206ENST00000466342 ERICH1Q86X53 443 aa12.36□□□□□ -0.43
SQSTM1-206ENST00000466342 NAT16Q8N8M0 369 aa12.36□□□□□ -0.43
SQSTM1-206ENST00000466342 MSANTD4Q8NCY6 345 aa12.36□□□□□ -0.43
SQSTM1-206ENST00000466342 GOLGA1Q92805 767 aa12.36□□□□□ -0.43
SQSTM1-206ENST00000466342 MRFAP1L1Q96HT8 127 aa12.36□□□□□ -0.43
SQSTM1-206ENST00000466342 XPO6Q96QU8 1125 aaKnown RBP12.36□□□□□ -0.43
SQSTM1-206ENST00000466342 PCDHB18PQ96TA0 734 aa12.36□□□□□ -0.43
SQSTM1-206ENST00000466342 TRIM62Q9BVG3 475 aa12.36□□□□□ -0.43
SQSTM1-206ENST00000466342 DCLK3Q9C098 648 aa12.36□□□□□ -0.43
SQSTM1-206ENST00000466342 HAUS4Q9H6D7 363 aa12.36□□□□□ -0.43
SQSTM1-206ENST00000466342 SYNCQ9H7C4 482 aa12.36□□□□□ -0.43
SQSTM1-206ENST00000466342 CD248Q9HCU0 757 aa12.36□□□□□ -0.43
SQSTM1-206ENST00000466342 CD93Q9NPY3 652 aa12.36□□□□□ -0.43
SQSTM1-206ENST00000466342 OLA1Q9NTK5 396 aaKnown RBP12.36□□□□□ -0.43
SQSTM1-206ENST00000466342 SEPT11Q9NVA2 429 aaKnown RBP12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms