RNA–Protein interactions for RNA: ENST00000460289.5

PTPN4-208, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 577 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-208ENST00000460289 IGSF8Q969P0 613 aa23.72■■□□□ 1.39
PTPN4-208ENST00000460289 C1orf74Q96LT6 269 aa23.72■■□□□ 1.39
PTPN4-208ENST00000460289 AGPAT1Q99943 283 aa23.72■■□□□ 1.39
PTPN4-208ENST00000460289 C11orf70Q9BRQ4 267 aa23.72■■□□□ 1.39
PTPN4-208ENST00000460289 ADAM33Q9BZ11 813 aa23.72■■□□□ 1.39
PTPN4-208ENST00000460289 SEPT11Q9NVA2 429 aaKnown RBP23.72■■□□□ 1.39
PTPN4-208ENST00000460289 ADAM22Q9P0K1 906 aa23.72■■□□□ 1.39
PTPN4-208ENST00000460289 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP23.71■■□□□ 1.39
PTPN4-208ENST00000460289 SLC30A4O14863 429 aa23.71■■□□□ 1.39
PTPN4-208ENST00000460289 CLDN11O75508 207 aa23.71■■□□□ 1.39
PTPN4-208ENST00000460289 TPMTP51580 245 aa23.71■■□□□ 1.39
PTPN4-208ENST00000460289 LIMK1P53667 647 aa23.71■■□□□ 1.39
PTPN4-208ENST00000460289 ECT2LQ008S8 904 aa23.71■■□□□ 1.39
PTPN4-208ENST00000460289 SULT2A1Q06520 285 aa23.71■■□□□ 1.39
PTPN4-208ENST00000460289 ZNF33AQ06730 810 aa23.71■■□□□ 1.39
PTPN4-208ENST00000460289 ZNF177Q13360 481 aaPredicted RBP23.71■■□□□ 1.39
PTPN4-208ENST00000460289 CLEC16AQ2KHT3 1053 aa23.71■■□□□ 1.39
PTPN4-208ENST00000460289 C5orf22Q49AR2 442 aa23.71■■□□□ 1.39
PTPN4-208ENST00000460289 PHF13Q86YI8 300 aaPredicted RBP23.71■■□□□ 1.39
PTPN4-208ENST00000460289 ZNF366Q8N895 744 aa23.71■■□□□ 1.39
PTPN4-208ENST00000460289 CFAP57Q96MR6 1250 aa23.71■■□□□ 1.39
PTPN4-208ENST00000460289 PRSS16Q9NQE7 514 aa23.71■■□□□ 1.39
PTPN4-208ENST00000460289 METTL5Q9NRN9 209 aaKnown RBP23.71■■□□□ 1.39
PTPN4-208ENST00000460289 ERVW-1Q9UQF0 538 aa23.71■■□□□ 1.39
PTPN4-208ENST00000460289 A0A1B0GTH6 734 aa23.7■■□□□ 1.38
PTPN4-208ENST00000460289 A0A1W2PQC6 194 aa23.7■■□□□ 1.38
PTPN4-208ENST00000460289 SERPINC1P01008 464 aa23.7■■□□□ 1.38
PTPN4-208ENST00000460289 CALB1P05937 261 aa23.7■■□□□ 1.38
PTPN4-208ENST00000460289 C7P10643 843 aa23.7■■□□□ 1.38
PTPN4-208ENST00000460289 RDXP35241 583 aaKnown RBP23.7■■□□□ 1.38
PTPN4-208ENST00000460289 HOXD12P35452 270 aa23.7■■□□□ 1.38
PTPN4-208ENST00000460289 PLK1P53350 603 aa23.7■■□□□ 1.38
PTPN4-208ENST00000460289 ZBTB16Q05516 673 aa23.7■■□□□ 1.38
PTPN4-208ENST00000460289 RNF219Q5W0B1 726 aaPredicted RBP23.7■■□□□ 1.38
PTPN4-208ENST00000460289 LRRC31Q6UY01 552 aa23.7■■□□□ 1.38
PTPN4-208ENST00000460289 BNIPLQ7Z465 357 aa23.7■■□□□ 1.38
PTPN4-208ENST00000460289 DEFB119Q8N690 84 aa23.7■■□□□ 1.38
PTPN4-208ENST00000460289 FOXJ1Q92949 421 aa23.7■■□□□ 1.38
PTPN4-208ENST00000460289 MYO19Q96H55 970 aa23.7■■□□□ 1.38
PTPN4-208ENST00000460289 ZNF419Q96HQ0 510 aaPredicted RBP23.7■■□□□ 1.38
PTPN4-208ENST00000460289 WSB2Q9NYS7 404 aaPredicted RBP23.7■■□□□ 1.38
PTPN4-208ENST00000460289 PILRBQ9UKJ0 227 aa23.7■■□□□ 1.38
PTPN4-208ENST00000460289 ENDOD1O94919 500 aa23.69■■□□□ 1.38
PTPN4-208ENST00000460289 IGLV3-19P01714 112 aa23.69■■□□□ 1.38
PTPN4-208ENST00000460289 PDGFRAP16234 1089 aa23.69■■□□□ 1.38
PTPN4-208ENST00000460289 SDC4P31431 198 aa23.69■■□□□ 1.38
PTPN4-208ENST00000460289 NNMTP40261 264 aa23.69■■□□□ 1.38
PTPN4-208ENST00000460289 CDH4P55283 916 aa23.69■■□□□ 1.38
PTPN4-208ENST00000460289 GSCP56915 257 aaPredicted RBP23.69■■□□□ 1.38
PTPN4-208ENST00000460289 ARID5BQ14865 1188 aa23.69■■□□□ 1.38
PTPN4-208ENST00000460289 SKOR2Q2VWA4 1001 aaPredicted RBP23.69■■□□□ 1.38
PTPN4-208ENST00000460289 HNRNPA1L2Q32P51 320 aaKnown RBP23.69■■□□□ 1.38
PTPN4-208ENST00000460289 SYCP2LQ5T4T6 812 aa23.69■■□□□ 1.38
PTPN4-208ENST00000460289 TCEAL6Q6IPX3 200 aa23.69■■□□□ 1.38
PTPN4-208ENST00000460289 TRNP1Q6NT89 227 aa23.69■■□□□ 1.38
PTPN4-208ENST00000460289 RABEPKQ7Z6M1 372 aa23.69■■□□□ 1.38
PTPN4-208ENST00000460289 C14orf80Q86SX3 495 aa23.69■■□□□ 1.38
PTPN4-208ENST00000460289 CIR1Q86X95 450 aaPredicted RBP23.69■■□□□ 1.38
PTPN4-208ENST00000460289 APCDD1Q8J025 514 aa23.69■■□□□ 1.38
PTPN4-208ENST00000460289 EMC1Q8N766 993 aa23.69■■□□□ 1.38
PTPN4-208ENST00000460289 CEP76Q8TAP6 659 aa23.69■■□□□ 1.38
PTPN4-208ENST00000460289 TCEAL3Q969E4 200 aa23.69■■□□□ 1.38
PTPN4-208ENST00000460289 TOE1Q96GM8 510 aaKnown RBP23.69■■□□□ 1.38
PTPN4-208ENST00000460289 MRGPRX3Q96LB0 322 aa23.69■■□□□ 1.38
PTPN4-208ENST00000460289 HAPLN3Q96S86 360 aa23.69■■□□□ 1.38
PTPN4-208ENST00000460289 NUP58Q9BVL2 599 aa23.69■■□□□ 1.38
PTPN4-208ENST00000460289 CBX8Q9HC52 389 aa23.69■■□□□ 1.38
PTPN4-208ENST00000460289 EVLQ9UI08 416 aaPredicted RBP23.69■■□□□ 1.38
PTPN4-208ENST00000460289 CKAP5Q14008 2032 aa23.68■■□□□ 1.38
PTPN4-208ENST00000460289 KRT3P12035 628 aa23.68■■□□□ 1.38
PTPN4-208ENST00000460289 ITPKAP23677 461 aa23.68■■□□□ 1.38
PTPN4-208ENST00000460289 ATP11AP98196 1134 aa23.68■■□□□ 1.38
PTPN4-208ENST00000460289 PTP4A2Q12974 167 aa23.68■■□□□ 1.38
PTPN4-208ENST00000460289 NR1I3Q14994 352 aa23.68■■□□□ 1.38
PTPN4-208ENST00000460289 PEAR1Q5VY43 1037 aaPredicted RBP23.68■■□□□ 1.38
PTPN4-208ENST00000460289 CXorf57Q6NSI4 855 aaKnown RBP23.68■■□□□ 1.38
PTPN4-208ENST00000460289 IRF2BP2Q7Z5L9 587 aa23.68■■□□□ 1.38
PTPN4-208ENST00000460289 PHLDB2Q86SQ0 1253 aa23.68■■□□□ 1.38
PTPN4-208ENST00000460289 RXFP2Q8WXD0 754 aa23.68■■□□□ 1.38
PTPN4-208ENST00000460289 BAP1Q92560 729 aa23.68■■□□□ 1.38
PTPN4-208ENST00000460289 NAP1L5Q96NT1 182 aaPredicted RBP23.68■■□□□ 1.38
PTPN4-208ENST00000460289 CD93Q9NPY3 652 aa23.68■■□□□ 1.38
PTPN4-208ENST00000460289 ANLNQ9NQW6 1124 aa23.68■■□□□ 1.38
PTPN4-208ENST00000460289 RXFP3Q9NSD7 469 aa23.68■■□□□ 1.38
PTPN4-208ENST00000460289 TMEM74BQ9NUR3 256 aa23.68■■□□□ 1.38
PTPN4-208ENST00000460289 TBC1D30Q9Y2I9 924 aa23.68■■□□□ 1.38
PTPN4-208ENST00000460289 DCHS1Q96JQ0 3298 aa23.67■■□□□ 1.38
PTPN4-208ENST00000460289 TARSL2A2RTX5 802 aaKnown RBP23.67■■□□□ 1.38
PTPN4-208ENST00000460289 DRGXA6NNA5 263 aa23.67■■□□□ 1.38
PTPN4-208ENST00000460289 DNTTP04053 509 aa23.67■■□□□ 1.38
PTPN4-208ENST00000460289 MZF1P28698 734 aaPredicted RBP23.67■■□□□ 1.38
PTPN4-208ENST00000460289 GGCXP38435 758 aa23.67■■□□□ 1.38
PTPN4-208ENST00000460289 CTSOP43234 321 aaPredicted RBP23.67■■□□□ 1.38
PTPN4-208ENST00000460289 C1QBPQ07021 282 aaKnown RBP23.67■■□□□ 1.38
PTPN4-208ENST00000460289 TRIM61Q5EBN2 209 aa23.67■■□□□ 1.38
PTPN4-208ENST00000460289 WDR45BQ5MNZ6 344 aa23.67■■□□□ 1.38
PTPN4-208ENST00000460289 STPG1Q5TH74 334 aa23.67■■□□□ 1.38
PTPN4-208ENST00000460289 IL31Q6EBC2 164 aa23.67■■□□□ 1.38
PTPN4-208ENST00000460289 PPP1R2P3Q6NXS1 205 aa23.67■■□□□ 1.38
PTPN4-208ENST00000460289 CADM4Q8NFZ8 388 aa23.67■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms