RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 SLC13A1Q9BZW2 595 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 DNAI2Q9GZS0 605 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 DRC3Q9H069 523 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 PLEKHA5Q9HAU0 1116 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 UGT1A7Q9HAW7 530 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 UGT1A10Q9HAW8 530 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 UGT1A8Q9HAW9 530 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 PPP2R3BQ9Y5P8 575 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 SCN1AP35498 2009 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 MYLKQ15746 1914 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 TRIM64A6NGJ6 449 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 SPDYE16A6NNV3 312 aaPredicted RBP5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 G3V2L1 256 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 VILLO15195 856 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 TIMM44O43615 452 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 BCAS2O75934 225 aaPredicted RBP5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 POLBP06746 335 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 C8BP07358 591 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 CYP3A5P20815 502 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 PEX2P28328 305 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 SPRP35270 261 aaPredicted RBP5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 ACADSBP45954 432 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 HCAR3P49019 387 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 NR1H2P55055 460 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 TXNL4AP83876 142 aaKnown RBP5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 SLC25A3Q00325 362 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 BMPR2Q13873 1038 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 SPATS1Q496A3 300 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 MROH9Q5TGP6 573 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 NCBP2-AS2Q69YL0 99 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 C1orf228Q6PIY5 440 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 FRMD7Q6ZUT3 714 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 LIMS2Q7Z4I7 341 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 NIM1KQ8IY84 436 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 GOLM1Q8NBJ4 401 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 B4GALNT2Q8NHY0 566 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 RNF217Q8TC41 542 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 ADAMTS16Q8TE57 1224 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 DCUN1D1Q96GG9 259 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 MS4A4AQ96JQ5 239 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 MAELQ96JY0 434 aaKnown RBP5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 LRGUKQ96M69 825 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 BIRC8Q96P09 236 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 SLC9A7Q96T83 725 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 MPHOSPH6Q99547 160 aaKnown RBP5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 APOL6Q9BWW8 343 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 SMYD3Q9H7B4 428 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 C8orf4Q9NR00 106 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 TUBA8Q9NY65 449 aaPredicted RBP5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 DTLQ9NZJ0 730 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 TSPAN16Q9UKR8 245 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 RAP2CQ9Y3L5 183 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 DTNAQ9Y4J8 743 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 ANKRD36A6QL64 1941 aa5.87□□□□□ -1.47
CCDC88A-203ENST00000412148 ARHGAP42A6NI28 874 aa5.87□□□□□ -1.47
CCDC88A-203ENST00000412148 HDAC3O15379 428 aa5.87□□□□□ -1.47
CCDC88A-203ENST00000412148 NCAM2O15394 837 aa5.87□□□□□ -1.47
CCDC88A-203ENST00000412148 MTSS1O43312 755 aa5.87□□□□□ -1.47
CCDC88A-203ENST00000412148 HBP1O60381 514 aa5.87□□□□□ -1.47
CCDC88A-203ENST00000412148 TRIM13O60858 407 aa5.87□□□□□ -1.47
CCDC88A-203ENST00000412148 PIAS1O75925 651 aa5.87□□□□□ -1.47
CCDC88A-203ENST00000412148 RAD17O75943 681 aa5.87□□□□□ -1.47
CCDC88A-203ENST00000412148 CABYRO75952 493 aa5.87□□□□□ -1.47
CCDC88A-203ENST00000412148 BAG2O95816 211 aa5.87□□□□□ -1.47
CCDC88A-203ENST00000412148 ZCCHC18P0CG32 403 aa5.87□□□□□ -1.47
CCDC88A-203ENST00000412148 CHRNA5P30532 468 aa5.87□□□□□ -1.47
CCDC88A-203ENST00000412148 ARRB2P32121 409 aa5.87□□□□□ -1.47
CCDC88A-203ENST00000412148 TCF7P36402 384 aaPredicted RBP5.87□□□□□ -1.47
CCDC88A-203ENST00000412148 HIRAP54198 1017 aaPredicted RBP5.87□□□□□ -1.47
CCDC88A-203ENST00000412148 CXCL9Q07325 125 aa5.87□□□□□ -1.47
CCDC88A-203ENST00000412148 NSUN2Q08J23 767 aaKnown RBP eCLIP5.87□□□□□ -1.47
CCDC88A-203ENST00000412148 SLC10A2Q12908 348 aaPredicted RBP5.87□□□□□ -1.47
CCDC88A-203ENST00000412148 TRAP1Q12931 704 aaKnown RBP5.87□□□□□ -1.47
CCDC88A-203ENST00000412148 DLG1Q12959 904 aa5.87□□□□□ -1.47
CCDC88A-203ENST00000412148 PCBP1Q15365 356 aaKnown RBP eCLIP5.87□□□□□ -1.47
CCDC88A-203ENST00000412148 TLR1Q15399 786 aa5.87□□□□□ -1.47
CCDC88A-203ENST00000412148 TBC1D25Q3MII6 688 aa5.87□□□□□ -1.47
CCDC88A-203ENST00000412148 FBXL19Q6PCT2 694 aa5.87□□□□□ -1.47
CCDC88A-203ENST00000412148 KCNT2Q6UVM3 1135 aa5.87□□□□□ -1.47
CCDC88A-203ENST00000412148 HACD2Q6Y1H2 254 aa5.87□□□□□ -1.47
CCDC88A-203ENST00000412148 C10orf107Q8IVU9 208 aa5.87□□□□□ -1.47
CCDC88A-203ENST00000412148 DEFB107AQ8IZN7 70 aa5.87□□□□□ -1.47
CCDC88A-203ENST00000412148 MPP5Q8N3R9 675 aa5.87□□□□□ -1.47
CCDC88A-203ENST00000412148 LRRC52Q8N7C0 313 aa5.87□□□□□ -1.47
CCDC88A-203ENST00000412148 KYQ8NBH2 561 aa5.87□□□□□ -1.47
CCDC88A-203ENST00000412148 RNF149Q8NC42 400 aa5.87□□□□□ -1.47
CCDC88A-203ENST00000412148 PPP1R14CQ8TAE6 165 aa5.87□□□□□ -1.47
CCDC88A-203ENST00000412148 SLC26A7Q8TE54 656 aa5.87□□□□□ -1.47
CCDC88A-203ENST00000412148 KBTBD7Q8WVZ9 684 aa5.87□□□□□ -1.47
CCDC88A-203ENST00000412148 PYDC1Q8WXC3 89 aa5.87□□□□□ -1.47
CCDC88A-203ENST00000412148 LENG1Q96BZ8 264 aaPredicted RBP5.87□□□□□ -1.47
CCDC88A-203ENST00000412148 CERS2Q96G23 380 aa5.87□□□□□ -1.47
CCDC88A-203ENST00000412148 HPDLQ96IR7 371 aa5.87□□□□□ -1.47
CCDC88A-203ENST00000412148 HIC2Q96JB3 615 aa5.87□□□□□ -1.47
CCDC88A-203ENST00000412148 HSFY1Q96LI6 401 aa5.87□□□□□ -1.47
CCDC88A-203ENST00000412148 CSPG4P5Q96PW8 444 aa5.87□□□□□ -1.47
CCDC88A-203ENST00000412148 GPR20Q99678 358 aa5.87□□□□□ -1.47
CCDC88A-203ENST00000412148 TCHPQ9BT92 498 aa5.87□□□□□ -1.47
CCDC88A-203ENST00000412148 ZNF395Q9H8N7 513 aaPredicted RBP5.87□□□□□ -1.47
CCDC88A-203ENST00000412148 LRRC40Q9H9A6 602 aa5.87□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms