RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 SH3BP1Q9Y3L3 701 aa13.85□□□□□ -0.19
LIMS1-204ENST00000409441 PRUNE2Q8WUY3 3088 aa13.84□□□□□ -0.19
LIMS1-204ENST00000409441 KCNU1A8MYU2 1149 aa13.84□□□□□ -0.19
LIMS1-204ENST00000409441 EIF3HO15372 352 aaKnown RBP eCLIP13.84□□□□□ -0.19
LIMS1-204ENST00000409441 TJP3O95049 919 aa13.84□□□□□ -0.19
LIMS1-204ENST00000409441 KLKB1P03952 638 aa13.84□□□□□ -0.19
LIMS1-204ENST00000409441 KRT1P04264 644 aa13.84□□□□□ -0.19
LIMS1-204ENST00000409441 TCF3P15923 654 aa13.84□□□□□ -0.19
LIMS1-204ENST00000409441 FCARP24071 287 aa13.84□□□□□ -0.19
LIMS1-204ENST00000409441 HNRNPH2P55795 449 aaKnown RBP13.84□□□□□ -0.19
LIMS1-204ENST00000409441 GNGT1P63211 74 aa13.84□□□□□ -0.19
LIMS1-204ENST00000409441 IFFO1Q0D2I5 559 aa13.84□□□□□ -0.19
LIMS1-204ENST00000409441 PPP2R5DQ14738 602 aa13.84□□□□□ -0.19
LIMS1-204ENST00000409441 DAB2IPQ5VWQ8 1189 aa13.84□□□□□ -0.19
LIMS1-204ENST00000409441 NUGGCQ68CJ6 796 aa13.84□□□□□ -0.19
LIMS1-204ENST00000409441 HTR3DQ70Z44 454 aa13.84□□□□□ -0.19
LIMS1-204ENST00000409441 TRMT10CQ7L0Y3 403 aaKnown RBP13.84□□□□□ -0.19
LIMS1-204ENST00000409441 CCHCR1Q8TD31 782 aa13.84□□□□□ -0.19
LIMS1-204ENST00000409441 FGF14Q92915 247 aa13.84□□□□□ -0.19
LIMS1-204ENST00000409441 E2F7Q96AV8 911 aa13.84□□□□□ -0.19
LIMS1-204ENST00000409441 NCAPGQ9BPX3 1015 aa13.84□□□□□ -0.19
LIMS1-204ENST00000409441 EPB41L4BQ9H329 900 aa13.84□□□□□ -0.19
LIMS1-204ENST00000409441 KIF9Q9HAQ2 790 aa13.84□□□□□ -0.19
LIMS1-204ENST00000409441 OBP2AQ9NY56 170 aa13.84□□□□□ -0.19
LIMS1-204ENST00000409441 LIMD1Q9UGP4 676 aa13.84□□□□□ -0.19
LIMS1-204ENST00000409441 ASIC3Q9UHC3 531 aa13.84□□□□□ -0.19
LIMS1-204ENST00000409441 PCSK1NQ9UHG2 260 aa13.84□□□□□ -0.19
LIMS1-204ENST00000409441 SLC12A6Q9UHW9 1150 aa13.84□□□□□ -0.19
LIMS1-204ENST00000409441 DENND4CQ5VZ89 1909 aa13.84□□□□□ -0.19
LIMS1-204ENST00000409441 OBSL1O75147 1896 aa13.83□□□□□ -0.19
LIMS1-204ENST00000409441 HEPACAM2A8MVW5 462 aa13.83□□□□□ -0.2
LIMS1-204ENST00000409441 ANHXE9PGG2 379 aa13.83□□□□□ -0.2
LIMS1-204ENST00000409441 SCAMP3O14828 347 aaKnown RBP13.83□□□□□ -0.2
LIMS1-204ENST00000409441 GREM1O60565 184 aa13.83□□□□□ -0.2
LIMS1-204ENST00000409441 LRCH4O75427 683 aa13.83□□□□□ -0.2
LIMS1-204ENST00000409441 APOEP02649 317 aa13.83□□□□□ -0.2
LIMS1-204ENST00000409441 MIPP30301 263 aa13.83□□□□□ -0.2
LIMS1-204ENST00000409441 CORO1AP31146 461 aaKnown RBP13.83□□□□□ -0.2
LIMS1-204ENST00000409441 PCK1P35558 622 aa13.83□□□□□ -0.2
LIMS1-204ENST00000409441 SNX1Q13596 522 aa13.83□□□□□ -0.2
LIMS1-204ENST00000409441 KRT71Q3SY84 523 aa13.83□□□□□ -0.2
LIMS1-204ENST00000409441 ODF2Q5BJF6 829 aa13.83□□□□□ -0.2
LIMS1-204ENST00000409441 BRMS1LQ5PSV4 323 aa13.83□□□□□ -0.2
LIMS1-204ENST00000409441 RHBDF2Q6PJF5 856 aa13.83□□□□□ -0.2
LIMS1-204ENST00000409441 CEP128Q6ZU80 1094 aa13.83□□□□□ -0.2
LIMS1-204ENST00000409441 MTSS1LQ765P7 747 aa13.83□□□□□ -0.2
LIMS1-204ENST00000409441 DENND1CQ8IV53 801 aa13.83□□□□□ -0.2
LIMS1-204ENST00000409441 CCDC89Q8N998 374 aa13.83□□□□□ -0.2
LIMS1-204ENST00000409441 OR2W6PQ8NHA6 318 aa13.83□□□□□ -0.2
LIMS1-204ENST00000409441 RIN3Q8TB24 985 aa13.83□□□□□ -0.2
LIMS1-204ENST00000409441 ATXN2LQ8WWM7 1075 aaKnown RBP13.83□□□□□ -0.2
LIMS1-204ENST00000409441 ELSPBP1Q96BH3 223 aa13.83□□□□□ -0.2
LIMS1-204ENST00000409441 RPP25Q9BUL9 199 aaKnown RBP13.83□□□□□ -0.2
LIMS1-204ENST00000409441 PLA2G2FQ9BZM2 168 aa13.83□□□□□ -0.2
LIMS1-204ENST00000409441 FOXP3Q9BZS1 431 aa13.83□□□□□ -0.2
LIMS1-204ENST00000409441 TKTL2Q9H0I9 626 aa13.83□□□□□ -0.2
LIMS1-204ENST00000409441 ARHGEF38Q9NXL2 777 aa13.83□□□□□ -0.2
LIMS1-204ENST00000409441 LSM7Q9UK45 103 aaKnown RBP13.83□□□□□ -0.2
LIMS1-204ENST00000409441 AGO1Q9UL18 857 aaKnown RBP13.83□□□□□ -0.2
LIMS1-204ENST00000409441 EFR3BQ9Y2G0 817 aa13.83□□□□□ -0.2
LIMS1-204ENST00000409441 NEU2Q9Y3R4 380 aa13.83□□□□□ -0.2
LIMS1-204ENST00000409441 E2F8A0AVK6 867 aa13.82□□□□□ -0.2
LIMS1-204ENST00000409441 NDC80O14777 642 aa13.82□□□□□ -0.2
LIMS1-204ENST00000409441 PRPSAP2O60256 369 aa13.82□□□□□ -0.2
LIMS1-204ENST00000409441 MOCS2O96007 188 aaPredicted RBP13.82□□□□□ -0.2
LIMS1-204ENST00000409441 KRT7P08729 469 aa13.82□□□□□ -0.2
LIMS1-204ENST00000409441 IVDP26440 423 aa13.82□□□□□ -0.2
LIMS1-204ENST00000409441 ADRA1BP35368 520 aa13.82□□□□□ -0.2
LIMS1-204ENST00000409441 ADCY2Q08462 1091 aa13.82□□□□□ -0.2
LIMS1-204ENST00000409441 ZNF77Q15935 545 aa13.82□□□□□ -0.2
LIMS1-204ENST00000409441 HADHQ16836 314 aaKnown RBP13.82□□□□□ -0.2
LIMS1-204ENST00000409441 ARL13BQ3SXY8 428 aa13.82□□□□□ -0.2
LIMS1-204ENST00000409441 SPOCD1Q6ZMY3 1216 aa13.82□□□□□ -0.2
LIMS1-204ENST00000409441 CCDC185Q8N715 623 aa13.82□□□□□ -0.2
LIMS1-204ENST00000409441 BPIFB1Q8TDL5 484 aa13.82□□□□□ -0.2
LIMS1-204ENST00000409441 ATG4AQ8WYN0 398 aa13.82□□□□□ -0.2
LIMS1-204ENST00000409441 AZIN2Q96A70 460 aa13.82□□□□□ -0.2
LIMS1-204ENST00000409441 CCDC114Q96M63 670 aa13.82□□□□□ -0.2
LIMS1-204ENST00000409441 KXD1Q9BQD3 176 aa13.82□□□□□ -0.2
LIMS1-204ENST00000409441 HEMGNQ9BXL5 484 aa13.82□□□□□ -0.2
LIMS1-204ENST00000409441 FRMD8P1Q9BZ68 369 aaPredicted RBP13.82□□□□□ -0.2
LIMS1-204ENST00000409441 ANLNQ9NQW6 1124 aa13.82□□□□□ -0.2
LIMS1-204ENST00000409441 USP18Q9UMW8 372 aa13.82□□□□□ -0.2
LIMS1-204ENST00000409441 R3HDM2Q9Y2K5 976 aaKnown RBP13.82□□□□□ -0.2
LIMS1-204ENST00000409441 NUMBLQ9Y6R0 609 aa13.82□□□□□ -0.2
LIMS1-204ENST00000409441 I6L893 689 aaPredicted RBP13.82□□□□□ -0.2
LIMS1-204ENST00000409441 PAGE1O75459 146 aa13.82□□□□□ -0.2
LIMS1-204ENST00000409441 ECI2O75521 394 aa13.82□□□□□ -0.2
LIMS1-204ENST00000409441 TCF4P15884 667 aa13.82□□□□□ -0.2
LIMS1-204ENST00000409441 GJC1P36383 396 aa13.82□□□□□ -0.2
LIMS1-204ENST00000409441 SLC11A2P49281 568 aa13.82□□□□□ -0.2
LIMS1-204ENST00000409441 HTR4Q13639 388 aa13.82□□□□□ -0.2
LIMS1-204ENST00000409441 VITQ6UXI7 678 aa13.82□□□□□ -0.2
LIMS1-204ENST00000409441 Q6ZNB5 142 aa13.82□□□□□ -0.2
LIMS1-204ENST00000409441 MFSD6LQ8IWD5 586 aa13.82□□□□□ -0.2
LIMS1-204ENST00000409441 ATP6V0D2Q8N8Y2 350 aa13.82□□□□□ -0.2
LIMS1-204ENST00000409441 RSAD2Q8WXG1 361 aa13.82□□□□□ -0.2
LIMS1-204ENST00000409441 RNF25Q96BH1 459 aaPredicted RBP13.82□□□□□ -0.2
LIMS1-204ENST00000409441 TLCD1Q96CP7 247 aa13.82□□□□□ -0.2
LIMS1-204ENST00000409441 PGM2Q96G03 612 aa13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms