RNA–Protein interactions for RNA: ENST00000392449.4

PTPRK-208, Transcript of protein tyrosine phosphatase, receptor type K, humanhuman

TSL 2

Gene PTPRK, Length 1,456 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRK-208ENST00000392449 PABPC3Q9H361 631 aaKnown RBP17.14■□□□□ 0.33
PTPRK-208ENST00000392449 TM9SF3Q9HD45 589 aa17.14■□□□□ 0.33
PTPRK-208ENST00000392449 DNAJC12Q9UKB3 198 aa17.14■□□□□ 0.33
PTPRK-208ENST00000392449 ZMIZ1Q9ULJ6 1067 aa17.14■□□□□ 0.33
PTPRK-208ENST00000392449 TP53BP1Q12888 1972 aaPredicted RBP17.14■□□□□ 0.33
PTPRK-208ENST00000392449 FREM2Q5SZK8 3169 aa17.13■□□□□ 0.33
PTPRK-208ENST00000392449 A0A1W2PP55 124 aa17.13■□□□□ 0.33
PTPRK-208ENST00000392449 KCNU1A8MYU2 1149 aa17.13■□□□□ 0.33
PTPRK-208ENST00000392449 F5H5T6 163 aa17.13■□□□□ 0.33
PTPRK-208ENST00000392449 FOXN3O00409 490 aaPredicted RBP17.13■□□□□ 0.33
PTPRK-208ENST00000392449 ASLP04424 464 aa17.13■□□□□ 0.33
PTPRK-208ENST00000392449 PDGFRAP16234 1089 aa17.13■□□□□ 0.33
PTPRK-208ENST00000392449 MZF1P28698 734 aaPredicted RBP17.13■□□□□ 0.33
PTPRK-208ENST00000392449 CLCN1P35523 988 aa17.13■□□□□ 0.33
PTPRK-208ENST00000392449 MATKP42679 507 aa17.13■□□□□ 0.33
PTPRK-208ENST00000392449 SLC14A1Q13336 389 aa17.13■□□□□ 0.33
PTPRK-208ENST00000392449 TPD52L1Q16890 204 aaPredicted RBP17.13■□□□□ 0.33
PTPRK-208ENST00000392449 KIF19Q2TAC6 998 aa17.13■□□□□ 0.33
PTPRK-208ENST00000392449 TTC31Q49AM3 519 aaPredicted RBP17.13■□□□□ 0.33
PTPRK-208ENST00000392449 PTPN20Q4JDL3 420 aa17.13■□□□□ 0.33
PTPRK-208ENST00000392449 OLFML1Q6UWY5 402 aa17.13■□□□□ 0.33
PTPRK-208ENST00000392449 CCDC117Q8IWD4 279 aaPredicted RBP17.13■□□□□ 0.33
PTPRK-208ENST00000392449 ZNF557Q8N988 423 aaPredicted RBP17.13■□□□□ 0.33
PTPRK-208ENST00000392449 MLKLQ8NB16 471 aa17.13■□□□□ 0.33
PTPRK-208ENST00000392449 ORAI3Q9BRQ5 295 aa17.13■□□□□ 0.33
PTPRK-208ENST00000392449 TRIM62Q9BVG3 475 aa17.13■□□□□ 0.33
PTPRK-208ENST00000392449 ZDHHC5Q9C0B5 715 aa17.13■□□□□ 0.33
PTPRK-208ENST00000392449 CLSTN2Q9H4D0 955 aa17.13■□□□□ 0.33
PTPRK-208ENST00000392449 FBRSQ9HAH7 460 aa17.13■□□□□ 0.33
PTPRK-208ENST00000392449 FBXL12Q9NXK8 326 aa17.13■□□□□ 0.33
PTPRK-208ENST00000392449 SNX11Q9Y5W9 270 aa17.13■□□□□ 0.33
PTPRK-208ENST00000392449 GTPBP10A4D1E9 387 aaKnown RBP17.12■□□□□ 0.33
PTPRK-208ENST00000392449 IGHV4-34P06331 123 aa17.12■□□□□ 0.33
PTPRK-208ENST00000392449 TFE3P19532 575 aaPredicted RBP17.12■□□□□ 0.33
PTPRK-208ENST00000392449 AFF3P51826 1226 aaKnown RBP17.12■□□□□ 0.33
PTPRK-208ENST00000392449 METAP1P53582 386 aa17.12■□□□□ 0.33
PTPRK-208ENST00000392449 ECT2LQ008S8 904 aa17.12■□□□□ 0.33
PTPRK-208ENST00000392449 ZBTB16Q05516 673 aa17.12■□□□□ 0.33
PTPRK-208ENST00000392449 NME3Q13232 169 aa17.12■□□□□ 0.33
PTPRK-208ENST00000392449 CST6Q15828 149 aa17.12■□□□□ 0.33
PTPRK-208ENST00000392449 MIIPQ5JXC2 388 aa17.12■□□□□ 0.33
PTPRK-208ENST00000392449 OR6B2Q6IFH4 312 aa17.12■□□□□ 0.33
PTPRK-208ENST00000392449 DPY19L2P1Q6NXN4 242 aa17.12■□□□□ 0.33
PTPRK-208ENST00000392449 CCAR2Q8N163 923 aaKnown RBP17.12■□□□□ 0.33
PTPRK-208ENST00000392449 STK40Q8N2I9 435 aa17.12■□□□□ 0.33
PTPRK-208ENST00000392449 ATP6V0D2Q8N8Y2 350 aa17.12■□□□□ 0.33
PTPRK-208ENST00000392449 OR52K2Q8NGK3 314 aa17.12■□□□□ 0.33
PTPRK-208ENST00000392449 SETD7Q8WTS6 366 aaKnown RBP17.12■□□□□ 0.33
PTPRK-208ENST00000392449 RNF34Q969K3 372 aa17.12■□□□□ 0.33
PTPRK-208ENST00000392449 IGSF8Q969P0 613 aa17.12■□□□□ 0.33
PTPRK-208ENST00000392449 PCED1AQ9H1Q7 454 aa17.12■□□□□ 0.33
PTPRK-208ENST00000392449 TM7SF3Q9NS93 570 aa17.12■□□□□ 0.33
PTPRK-208ENST00000392449 KIAA1522Q9P206 1035 aaPredicted RBP17.12■□□□□ 0.33
PTPRK-208ENST00000392449 PCOLCE2Q9UKZ9 415 aa17.12■□□□□ 0.33
PTPRK-208ENST00000392449 PCDHGC3Q9UN70 934 aa17.12■□□□□ 0.33
PTPRK-208ENST00000392449 CHD6Q8TD26 2715 aa17.12■□□□□ 0.33
PTPRK-208ENST00000392449 DMXL2Q8TDJ6 3036 aa17.12■□□□□ 0.33
PTPRK-208ENST00000392449 HSF2BPO75031 334 aa17.12■□□□□ 0.33
PTPRK-208ENST00000392449 CBFA2T3O75081 653 aa17.12■□□□□ 0.33
PTPRK-208ENST00000392449 CER1O95813 267 aa17.12■□□□□ 0.33
PTPRK-208ENST00000392449 FTH1P19P0C7X4 201 aa17.12■□□□□ 0.33
PTPRK-208ENST00000392449 PSMD8P48556 350 aa17.12■□□□□ 0.33
PTPRK-208ENST00000392449 CDK17Q00537 523 aa17.12■□□□□ 0.33
PTPRK-208ENST00000392449 PTK2Q05397 1052 aa17.12■□□□□ 0.33
PTPRK-208ENST00000392449 MAN2A1Q16706 1144 aa17.12■□□□□ 0.33
PTPRK-208ENST00000392449 OTUD1Q5VV17 481 aaPredicted RBP17.12■□□□□ 0.33
PTPRK-208ENST00000392449 CXorf57Q6NSI4 855 aaKnown RBP17.12■□□□□ 0.33
PTPRK-208ENST00000392449 FBXL22Q6P050 247 aa17.12■□□□□ 0.33
PTPRK-208ENST00000392449 FAM81BQ96LP2 452 aa17.12■□□□□ 0.33
PTPRK-208ENST00000392449 FAM129BQ96TA1 746 aa17.12■□□□□ 0.33
PTPRK-208ENST00000392449 NEUROG2Q9H2A3 272 aa17.12■□□□□ 0.33
PTPRK-208ENST00000392449 EBF2Q9HAK2 575 aa17.12■□□□□ 0.33
PTPRK-208ENST00000392449 SGK2Q9HBY8 427 aa17.12■□□□□ 0.33
PTPRK-208ENST00000392449 SLTMQ9NWH9 1034 aaKnown RBP eCLIP17.12■□□□□ 0.33
PTPRK-208ENST00000392449 BTBD3Q9Y2F9 522 aa17.12■□□□□ 0.33
PTPRK-208ENST00000392449 NEUROG3Q9Y4Z2 214 aa17.12■□□□□ 0.33
PTPRK-208ENST00000392449 PCDHB9Q9Y5E1 797 aa17.12■□□□□ 0.33
PTPRK-208ENST00000392449 ITIH6Q6UXX5 1313 aa17.11■□□□□ 0.33
PTPRK-208ENST00000392449 PLK4O00444 970 aa17.11■□□□□ 0.33
PTPRK-208ENST00000392449 RNASEH2AO75792 299 aaKnown RBP17.11■□□□□ 0.33
PTPRK-208ENST00000392449 MOCS3O95396 460 aa17.11■□□□□ 0.33
PTPRK-208ENST00000392449 PRKCSHP14314 528 aaPredicted RBP17.11■□□□□ 0.33
PTPRK-208ENST00000392449 ABCB4P21439 1286 aa17.11■□□□□ 0.33
PTPRK-208ENST00000392449 CCR1P32246 355 aa17.11■□□□□ 0.33
PTPRK-208ENST00000392449 GALCP54803 685 aa17.11■□□□□ 0.33
PTPRK-208ENST00000392449 IL9RQ01113 521 aa17.11■□□□□ 0.33
PTPRK-208ENST00000392449 RNF219Q5W0B1 726 aaPredicted RBP17.11■□□□□ 0.33
PTPRK-208ENST00000392449 KIAA0895LQ68EN5 471 aa17.11■□□□□ 0.33
PTPRK-208ENST00000392449 NCEH1Q6PIU2 408 aa17.11■□□□□ 0.33
PTPRK-208ENST00000392449 C11orf57Q6ZUT1 292 aaPredicted RBP17.11■□□□□ 0.33
PTPRK-208ENST00000392449 RAB44Q7Z6P3 723 aaPredicted RBP17.11■□□□□ 0.33
PTPRK-208ENST00000392449 C14orf80Q86SX3 495 aa17.11■□□□□ 0.33
PTPRK-208ENST00000392449 AADATQ8N5Z0 425 aa17.11■□□□□ 0.33
PTPRK-208ENST00000392449 PTPRN2Q92932 1015 aa17.11■□□□□ 0.33
PTPRK-208ENST00000392449 NDST4Q9H3R1 872 aa17.11■□□□□ 0.33
PTPRK-208ENST00000392449 ANLNQ9NQW6 1124 aa17.11■□□□□ 0.33
PTPRK-208ENST00000392449 CHMP5Q9NZZ3 219 aa17.11■□□□□ 0.33
PTPRK-208ENST00000392449 VANGL2Q9ULK5 521 aa17.11■□□□□ 0.33
PTPRK-208ENST00000392449 ANKRD6Q9Y2G4 727 aa17.11■□□□□ 0.33
PTPRK-208ENST00000392449 SNX10Q9Y5X0 201 aa17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms