RNA–Protein interactions for RNA: ENST00000367253.8

SYNE1-206, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 5,189 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-206ENST00000367253 CCDC195A0A1B0GUA6 201 aa8.81□□□□□ -1
SYNE1-206ENST00000367253 TCP11X1B4DZS4 312 aa8.81□□□□□ -1
SYNE1-206ENST00000367253 TRIM24O15164 1050 aa8.81□□□□□ -1
SYNE1-206ENST00000367253 IGKV5-2P06315 115 aa8.81□□□□□ -1
SYNE1-206ENST00000367253 KLK3P07288 261 aaPredicted RBP8.81□□□□□ -1
SYNE1-206ENST00000367253 MMP3P08254 477 aa8.81□□□□□ -1
SYNE1-206ENST00000367253 ATP6V1C1P21283 382 aa8.81□□□□□ -1
SYNE1-206ENST00000367253 TRIM23P36406 574 aa8.81□□□□□ -1
SYNE1-206ENST00000367253 AP1S2P56377 157 aa8.81□□□□□ -1
SYNE1-206ENST00000367253 SNRPFP62306 86 aaKnown RBP8.81□□□□□ -1
SYNE1-206ENST00000367253 NDUFA9Q16795 377 aa8.81□□□□□ -1
SYNE1-206ENST00000367253 SFR1Q86XK3 245 aa8.81□□□□□ -1
SYNE1-206ENST00000367253 SIRT2Q8IXJ6 389 aa8.81□□□□□ -1
SYNE1-206ENST00000367253 LIX1Q8N485 282 aa8.81□□□□□ -1
SYNE1-206ENST00000367253 GALNT4Q8N4A0 578 aa8.81□□□□□ -1
SYNE1-206ENST00000367253 CYFIP2Q96F07 1278 aa8.81□□□□□ -1
SYNE1-206ENST00000367253 EEF2KMTQ96G04 330 aa8.81□□□□□ -1
SYNE1-206ENST00000367253 SSX3Q99909 188 aa8.81□□□□□ -1
SYNE1-206ENST00000367253 ADGRE3Q9BY15 652 aa8.81□□□□□ -1
SYNE1-206ENST00000367253 USE1Q9NZ43 259 aa8.81□□□□□ -1
SYNE1-206ENST00000367253 NFKBIL1Q9UBC1 381 aaPredicted RBP8.81□□□□□ -1
SYNE1-206ENST00000367253 TRIM10Q9UDY6 481 aa8.81□□□□□ -1
SYNE1-206ENST00000367253 PXDNQ92626 1479 aa8.81□□□□□ -1
SYNE1-206ENST00000367253 NFAT5O94916 1531 aa8.81□□□□□ -1
SYNE1-206ENST00000367253 PIPSLA2A3N6 862 aa8.81□□□□□ -1
SYNE1-206ENST00000367253 USP12O75317 370 aa8.81□□□□□ -1
SYNE1-206ENST00000367253 ELNP15502 786 aa8.81□□□□□ -1
SYNE1-206ENST00000367253 VARSP26640 1264 aaKnown RBP8.81□□□□□ -1
SYNE1-206ENST00000367253 VASPP50552 380 aaPredicted RBP8.81□□□□□ -1
SYNE1-206ENST00000367253 CCR3P51677 355 aa8.81□□□□□ -1
SYNE1-206ENST00000367253 ATP2C1P98194 919 aaPredicted RBP8.81□□□□□ -1
SYNE1-206ENST00000367253 PRKCEQ02156 737 aa8.81□□□□□ -1
SYNE1-206ENST00000367253 PTPN11Q06124 597 aaPredicted RBP8.81□□□□□ -1
SYNE1-206ENST00000367253 LGALS3BPQ08380 585 aa8.81□□□□□ -1
SYNE1-206ENST00000367253 CNTN1Q12860 1018 aa8.81□□□□□ -1
SYNE1-206ENST00000367253 PKP1Q13835 747 aa8.81□□□□□ -1
SYNE1-206ENST00000367253 PSMD5Q16401 504 aa8.81□□□□□ -1
SYNE1-206ENST00000367253 RGS21Q2M5E4 152 aa8.81□□□□□ -1
SYNE1-206ENST00000367253 FAXCQ5TGI0 409 aa8.81□□□□□ -1
SYNE1-206ENST00000367253 LRRC8DQ7L1W4 858 aa8.81□□□□□ -1
SYNE1-206ENST00000367253 CYP2U1Q7Z449 544 aa8.81□□□□□ -1
SYNE1-206ENST00000367253 PHC2Q8IXK0 858 aa8.81□□□□□ -1
SYNE1-206ENST00000367253 GSPT2Q8IYD1 628 aaKnown RBP8.81□□□□□ -1
SYNE1-206ENST00000367253 CRELD1Q96HD1 420 aa8.81□□□□□ -1
SYNE1-206ENST00000367253 KLHL32Q96NJ5 620 aa8.81□□□□□ -1
SYNE1-206ENST00000367253 WDR6Q9NNW5 1121 aaKnown RBP8.81□□□□□ -1
SYNE1-206ENST00000367253 PIK3C2AO00443 1686 aa8.81□□□□□ -1
SYNE1-206ENST00000367253 PRR5-ARHGAP8B1AHC4 643 aa8.8□□□□□ -1
SYNE1-206ENST00000367253 SMAD9O15198 467 aaKnown RBP8.8□□□□□ -1
SYNE1-206ENST00000367253 GFPT2O94808 682 aa8.8□□□□□ -1
SYNE1-206ENST00000367253 PGK2P07205 417 aa8.8□□□□□ -1
SYNE1-206ENST00000367253 CCNYL3P0C7X3 344 aa8.8□□□□□ -1
SYNE1-206ENST00000367253 KLRC1P26715 233 aa8.8□□□□□ -1
SYNE1-206ENST00000367253 TLX1P31314 330 aaPredicted RBP8.8□□□□□ -1
SYNE1-206ENST00000367253 CSTF2P33240 577 aaKnown RBP eCLIP8.8□□□□□ -1
SYNE1-206ENST00000367253 SOX6P35712 828 aa8.8□□□□□ -1
SYNE1-206ENST00000367253 TBX2Q13207 712 aaPredicted RBP8.8□□□□□ -1
SYNE1-206ENST00000367253 FGL2Q14314 439 aa8.8□□□□□ -1
SYNE1-206ENST00000367253 SWI5Q1ZZU3 235 aa8.8□□□□□ -1
SYNE1-206ENST00000367253 ARMC4Q5T2S8 1044 aa8.8□□□□□ -1
SYNE1-206ENST00000367253 FAM45BPQ6NSW5 357 aa8.8□□□□□ -1
SYNE1-206ENST00000367253 IL22RA1Q8N6P7 574 aa8.8□□□□□ -1
SYNE1-206ENST00000367253 FAM84BQ96KN1 310 aaPredicted RBP8.8□□□□□ -1
SYNE1-206ENST00000367253 CAMKK2Q96RR4 588 aa8.8□□□□□ -1
SYNE1-206ENST00000367253 P2RX7Q99572 595 aaKnown RBP8.8□□□□□ -1
SYNE1-206ENST00000367253 C2orf49Q9BVC5 232 aaPredicted RBP8.8□□□□□ -1
SYNE1-206ENST00000367253 FOXP1Q9H334 677 aaPredicted RBP8.8□□□□□ -1
SYNE1-206ENST00000367253 EPS8L2Q9H6S3 715 aa8.8□□□□□ -1
SYNE1-206ENST00000367253 UBE2TQ9NPD8 197 aaPredicted RBP8.8□□□□□ -1
SYNE1-206ENST00000367253 MRTO4Q9UKD2 239 aaKnown RBP8.8□□□□□ -1
SYNE1-206ENST00000367253 SHPRHQ149N8 1683 aa8.8□□□□□ -1
SYNE1-206ENST00000367253 MAGEB16A2A368 324 aa8.8□□□□□ -1
SYNE1-206ENST00000367253 FAM187AA6NFU0 413 aa8.8□□□□□ -1
SYNE1-206ENST00000367253 MATN2O00339 956 aa8.8□□□□□ -1
SYNE1-206ENST00000367253 POLRMTO00411 1230 aaKnown RBP8.8□□□□□ -1
SYNE1-206ENST00000367253 PIK3R2O00459 728 aa8.8□□□□□ -1
SYNE1-206ENST00000367253 CYB561D2O14569 222 aa8.8□□□□□ -1
SYNE1-206ENST00000367253 LRRN2O75325 713 aa8.8□□□□□ -1
SYNE1-206ENST00000367253 APOL3O95236 402 aa8.8□□□□□ -1
SYNE1-206ENST00000367253 PNPP00491 289 aa8.8□□□□□ -1
SYNE1-206ENST00000367253 PGK1P00558 417 aa8.8□□□□□ -1
SYNE1-206ENST00000367253 ALPPP05187 535 aa8.8□□□□□ -1
SYNE1-206ENST00000367253 FESP07332 822 aa8.8□□□□□ -1
SYNE1-206ENST00000367253 DDX6P26196 483 aaKnown RBP eCLIP8.8□□□□□ -1
SYNE1-206ENST00000367253 MZF1P28698 734 aaPredicted RBP8.8□□□□□ -1
SYNE1-206ENST00000367253 ADORA1P30542 326 aa8.8□□□□□ -1
SYNE1-206ENST00000367253 GSTT1P30711 240 aa8.8□□□□□ -1
SYNE1-206ENST00000367253 ERFP50548 548 aa8.8□□□□□ -1
SYNE1-206ENST00000367253 DSG1Q02413 1049 aa8.8□□□□□ -1
SYNE1-206ENST00000367253 ZNF658Q5TYW1 1059 aaPredicted RBP8.8□□□□□ -1
SYNE1-206ENST00000367253 SARM1Q6SZW1 724 aa8.8□□□□□ -1
SYNE1-206ENST00000367253 C16orf89Q6UX73 402 aa8.8□□□□□ -1
SYNE1-206ENST00000367253 ELOA2Q8IYF1 753 aaPredicted RBP8.8□□□□□ -1
SYNE1-206ENST00000367253 BAP1Q92560 729 aa8.8□□□□□ -1
SYNE1-206ENST00000367253 ABCG8Q9H221 673 aa8.8□□□□□ -1
SYNE1-206ENST00000367253 XKR8Q9H6D3 395 aa8.8□□□□□ -1
SYNE1-206ENST00000367253 ZNF556Q9HAH1 456 aa8.8□□□□□ -1
SYNE1-206ENST00000367253 USP29Q9HBJ7 922 aa8.8□□□□□ -1
SYNE1-206ENST00000367253 KRT84Q9NSB2 600 aa8.8□□□□□ -1
SYNE1-206ENST00000367253 EHD3Q9NZN3 535 aa8.8□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms