RNA–Protein interactions for RNA: ENST00000355766.5

VPS13A-201, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 753 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-201ENST00000355766 SAAL1Q96ER3 474 aa7.34□□□□□ -1.23
VPS13A-201ENST00000355766 ALS2CR12Q96Q35 445 aa7.34□□□□□ -1.23
VPS13A-201ENST00000355766 CHP1Q99653 195 aa7.34□□□□□ -1.23
VPS13A-201ENST00000355766 SYT11Q9BT88 431 aa7.34□□□□□ -1.23
VPS13A-201ENST00000355766 TTPALQ9BTX7 342 aa7.34□□□□□ -1.23
VPS13A-201ENST00000355766 EDEM2Q9BV94 578 aa7.34□□□□□ -1.23
VPS13A-201ENST00000355766 TRMT61BQ9BVS5 477 aaKnown RBP7.34□□□□□ -1.23
VPS13A-201ENST00000355766 NXF3Q9H4D5 531 aaKnown RBP7.34□□□□□ -1.23
VPS13A-201ENST00000355766 SMOC1Q9H4F8 434 aa7.34□□□□□ -1.23
VPS13A-201ENST00000355766 PCIF1Q9H4Z3 704 aa7.34□□□□□ -1.23
VPS13A-201ENST00000355766 POLD4Q9HCU8 107 aa7.34□□□□□ -1.23
VPS13A-201ENST00000355766 ZNF334Q9HCZ1 680 aaPredicted RBP7.34□□□□□ -1.23
VPS13A-201ENST00000355766 DNAI1Q9UI46 699 aa7.34□□□□□ -1.23
VPS13A-201ENST00000355766 DUSP13Q9UII6 198 aa7.34□□□□□ -1.23
VPS13A-201ENST00000355766 DNAJC12Q9UKB3 198 aa7.34□□□□□ -1.23
VPS13A-201ENST00000355766 CNTN6Q9UQ52 1028 aa7.34□□□□□ -1.23
VPS13A-201ENST00000355766 GIT1Q9Y2X7 761 aa7.34□□□□□ -1.23
VPS13A-201ENST00000355766 HES2Q9Y543 173 aa7.34□□□□□ -1.23
VPS13A-201ENST00000355766 PCDHGA5Q9Y5G8 931 aa7.34□□□□□ -1.23
VPS13A-201ENST00000355766 ARNTLO00327 626 aa7.33□□□□□ -1.24
VPS13A-201ENST00000355766 TSPAN1O60635 241 aa7.33□□□□□ -1.24
VPS13A-201ENST00000355766 TADA2AO75478 443 aa7.33□□□□□ -1.24
VPS13A-201ENST00000355766 TOP3BO95985 862 aaKnown RBP7.33□□□□□ -1.24
VPS13A-201ENST00000355766 ASS1P00966 412 aaKnown RBP7.33□□□□□ -1.24
VPS13A-201ENST00000355766 C4BPAP04003 597 aaKnown RBP7.33□□□□□ -1.24
VPS13A-201ENST00000355766 TMEM253P0C7T8 217 aa7.33□□□□□ -1.24
VPS13A-201ENST00000355766 GZMAP12544 262 aa7.33□□□□□ -1.24
VPS13A-201ENST00000355766 GDI1P31150 447 aa7.33□□□□□ -1.24
VPS13A-201ENST00000355766 ATICP31939 592 aa7.33□□□□□ -1.24
VPS13A-201ENST00000355766 EIF4A3P38919 411 aaKnown RBP7.33□□□□□ -1.24
VPS13A-201ENST00000355766 DLG4P78352 724 aa7.33□□□□□ -1.24
VPS13A-201ENST00000355766 EGR3Q06889 387 aa7.33□□□□□ -1.24
VPS13A-201ENST00000355766 GOLGA8FQ08AF8 430 aa7.33□□□□□ -1.24
VPS13A-201ENST00000355766 GOLGA8DPQ0D2H9 430 aa7.33□□□□□ -1.24
VPS13A-201ENST00000355766 CAMK2GQ13555 558 aaPredicted RBP7.33□□□□□ -1.24
VPS13A-201ENST00000355766 RAB33AQ14088 237 aa7.33□□□□□ -1.24
VPS13A-201ENST00000355766 MTF1Q14872 753 aa7.33□□□□□ -1.24
VPS13A-201ENST00000355766 DRAP1Q14919 205 aaPredicted RBP7.33□□□□□ -1.24
VPS13A-201ENST00000355766 NAB2Q15742 525 aa7.33□□□□□ -1.24
VPS13A-201ENST00000355766 FAM78AQ5JUQ0 283 aa7.33□□□□□ -1.24
VPS13A-201ENST00000355766 TMEM201Q5SNT2 666 aa7.33□□□□□ -1.24
VPS13A-201ENST00000355766 C1orf228Q6PIY5 440 aa7.33□□□□□ -1.24
VPS13A-201ENST00000355766 VITQ6UXI7 678 aa7.33□□□□□ -1.24
VPS13A-201ENST00000355766 TRIM72Q6ZMU5 477 aa7.33□□□□□ -1.24
VPS13A-201ENST00000355766 SND1Q7KZF4 910 aaKnown RBP eCLIP7.33□□□□□ -1.24
VPS13A-201ENST00000355766 RTL10Q7L3V2 364 aa7.33□□□□□ -1.24
VPS13A-201ENST00000355766 KIAA1328Q86T90 577 aa7.33□□□□□ -1.24
VPS13A-201ENST00000355766 CEP57Q86XR8 500 aa7.33□□□□□ -1.24
VPS13A-201ENST00000355766 HACE1Q8IYU2 909 aa7.33□□□□□ -1.24
VPS13A-201ENST00000355766 C17orf53Q8N3J3 647 aaPredicted RBP7.33□□□□□ -1.24
VPS13A-201ENST00000355766 GSTCDQ8NEC7 633 aa7.33□□□□□ -1.24
VPS13A-201ENST00000355766 DEPDC1BQ8WUY9 529 aa7.33□□□□□ -1.24
VPS13A-201ENST00000355766 GAB3Q8WWW8 586 aa7.33□□□□□ -1.24
VPS13A-201ENST00000355766 RABGGTAQ92696 567 aa7.33□□□□□ -1.24
VPS13A-201ENST00000355766 CCDC127Q96BQ5 260 aa7.33□□□□□ -1.24
VPS13A-201ENST00000355766 PAAF1Q9BRP4 392 aa7.33□□□□□ -1.24
VPS13A-201ENST00000355766 DESI2Q9BSY9 194 aa7.33□□□□□ -1.24
VPS13A-201ENST00000355766 TCHPQ9BT92 498 aa7.33□□□□□ -1.24
VPS13A-201ENST00000355766 SCNM1Q9BWG6 230 aa7.33□□□□□ -1.24
VPS13A-201ENST00000355766 APOL6Q9BWW8 343 aa7.33□□□□□ -1.24
VPS13A-201ENST00000355766 GPR88Q9GZN0 384 aa7.33□□□□□ -1.24
VPS13A-201ENST00000355766 CDT1Q9H211 546 aa7.33□□□□□ -1.24
VPS13A-201ENST00000355766 IKZF4Q9H2S9 585 aa7.33□□□□□ -1.24
VPS13A-201ENST00000355766 PDZD7Q9H5P4 517 aa7.33□□□□□ -1.24
VPS13A-201ENST00000355766 ZFP14Q9HCL3 533 aa7.33□□□□□ -1.24
VPS13A-201ENST00000355766 NLRC4Q9NPP4 1024 aa7.33□□□□□ -1.24
VPS13A-201ENST00000355766 VPS45Q9NRW7 570 aa7.33□□□□□ -1.24
VPS13A-201ENST00000355766 TOPORSQ9NS56 1045 aaPredicted RBP7.33□□□□□ -1.24
VPS13A-201ENST00000355766 RBM12Q9NTZ6 932 aaKnown RBP7.33□□□□□ -1.24
VPS13A-201ENST00000355766 C2orf42Q9NWW7 574 aa7.33□□□□□ -1.24
VPS13A-201ENST00000355766 TRMT1Q9NXH9 659 aaKnown RBP7.33□□□□□ -1.24
VPS13A-201ENST00000355766 CACNG4Q9UBN1 327 aa7.33□□□□□ -1.24
VPS13A-201ENST00000355766 LCMT1Q9UIC8 334 aa7.33□□□□□ -1.24
VPS13A-201ENST00000355766 REXO2Q9Y3B8 237 aaKnown RBP7.33□□□□□ -1.24
VPS13A-201ENST00000355766 PCDHA13Q9Y5I0 950 aa7.33□□□□□ -1.24
VPS13A-201ENST00000355766 CNOT1A5YKK6 2376 aaKnown RBP7.33□□□□□ -1.24
VPS13A-201ENST00000355766 NCANO14594 1321 aa7.32□□□□□ -1.24
VPS13A-201ENST00000355766 CTAGE9A4FU28 777 aa7.32□□□□□ -1.24
VPS13A-201ENST00000355766 GOLGA8IPA6NC78 632 aa7.32□□□□□ -1.24
VPS13A-201ENST00000355766 GOLGA8JA6NMD2 632 aa7.32□□□□□ -1.24
VPS13A-201ENST00000355766 KRTAP9-7A8MTY7 169 aa7.32□□□□□ -1.24
VPS13A-201ENST00000355766 NPIPB6E9PJ23 425 aa7.32□□□□□ -1.24
VPS13A-201ENST00000355766 RPP40O75818 363 aaKnown RBP7.32□□□□□ -1.24
VPS13A-201ENST00000355766 TNNC2P02585 160 aa7.32□□□□□ -1.24
VPS13A-201ENST00000355766 ZGLP1P0C6A0 271 aa7.32□□□□□ -1.24
VPS13A-201ENST00000355766 DLATP10515 647 aaKnown RBP7.32□□□□□ -1.24
VPS13A-201ENST00000355766 P4HA1P13674 534 aa7.32□□□□□ -1.24
VPS13A-201ENST00000355766 PRLRP16471 622 aa7.32□□□□□ -1.24
VPS13A-201ENST00000355766 PSMC3P17980 439 aa7.32□□□□□ -1.24
VPS13A-201ENST00000355766 ARF4P18085 180 aaPredicted RBP7.32□□□□□ -1.24
VPS13A-201ENST00000355766 TNNI1P19237 187 aa7.32□□□□□ -1.24
VPS13A-201ENST00000355766 PAX3P23760 479 aa7.32□□□□□ -1.24
VPS13A-201ENST00000355766 PIK3CAP42336 1068 aa7.32□□□□□ -1.24
VPS13A-201ENST00000355766 MATR3P43243 847 aaKnown RBP eCLIP7.32□□□□□ -1.24
VPS13A-201ENST00000355766 PDE6CP51160 858 aa7.32□□□□□ -1.24
VPS13A-201ENST00000355766 YARSP54577 528 aaKnown RBP7.32□□□□□ -1.24
VPS13A-201ENST00000355766 HADHBP55084 474 aaKnown RBP7.32□□□□□ -1.24
VPS13A-201ENST00000355766 MLLT6P55198 1093 aaPredicted RBP7.32□□□□□ -1.24
VPS13A-201ENST00000355766 GNG11P61952 73 aa7.32□□□□□ -1.24
VPS13A-201ENST00000355766 ELAVL2Q12926 359 aaKnown RBP7.32□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 79.3 ms