RNA–Protein interactions for RNA: ENST00000354497.4

RTN3-204, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 1,407 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-204ENST00000354497 PIK3CAP42336 1068 aa11.64□□□□□ -0.55
RTN3-204ENST00000354497 PSMD8P48556 350 aa11.64□□□□□ -0.55
RTN3-204ENST00000354497 HARS2P49590 506 aaKnown RBP11.64□□□□□ -0.55
RTN3-204ENST00000354497 AP3M2P53677 418 aa11.64□□□□□ -0.55
RTN3-204ENST00000354497 YWHAGP61981 247 aaKnown RBP eCLIP11.64□□□□□ -0.55
RTN3-204ENST00000354497 E2F1Q01094 437 aa11.64□□□□□ -0.55
RTN3-204ENST00000354497 VAC14Q08AM6 782 aa11.64□□□□□ -0.55
RTN3-204ENST00000354497 SGSM1Q2NKQ1 1148 aa11.64□□□□□ -0.55
RTN3-204ENST00000354497 KIAA1614Q5VZ46 1190 aa11.64□□□□□ -0.55
RTN3-204ENST00000354497 TMC6Q7Z403 805 aa11.64□□□□□ -0.55
RTN3-204ENST00000354497 MMAAQ8IVH4 418 aaKnown RBP11.64□□□□□ -0.55
RTN3-204ENST00000354497 ZC3H3Q8IXZ2 948 aaKnown RBP11.64□□□□□ -0.55
RTN3-204ENST00000354497 ARHGAP18Q8N392 663 aa11.64□□□□□ -0.55
RTN3-204ENST00000354497 OXR1Q8N573 874 aa11.64□□□□□ -0.55
RTN3-204ENST00000354497 RFFLQ8WZ73 363 aa11.64□□□□□ -0.55
RTN3-204ENST00000354497 TTC9Q92623 222 aa11.64□□□□□ -0.55
RTN3-204ENST00000354497 TMA16Q96EY4 203 aaKnown RBP11.64□□□□□ -0.55
RTN3-204ENST00000354497 MED8Q96G25 268 aa11.64□□□□□ -0.55
RTN3-204ENST00000354497 NT5C1AQ9BXI3 368 aa11.64□□□□□ -0.55
RTN3-204ENST00000354497 FAM117AQ9C073 453 aa11.64□□□□□ -0.55
RTN3-204ENST00000354497 LRRC27Q9C0I9 530 aa11.64□□□□□ -0.55
RTN3-204ENST00000354497 RSPH9Q9H1X1 276 aaPredicted RBP11.64□□□□□ -0.55
RTN3-204ENST00000354497 PNPLA8Q9NP80 782 aa11.64□□□□□ -0.55
RTN3-204ENST00000354497 SCML1Q9UN30 329 aa11.64□□□□□ -0.55
RTN3-204ENST00000354497 HECTD1Q9ULT8 2610 aa11.63□□□□□ -0.55
RTN3-204ENST00000354497 MYH10P35580 1976 aa11.63□□□□□ -0.55
RTN3-204ENST00000354497 UBE4BO95155 1302 aa11.63□□□□□ -0.55
RTN3-204ENST00000354497 SIGLEC6O43699 453 aa11.63□□□□□ -0.55
RTN3-204ENST00000354497 ACP1P24666 158 aa11.63□□□□□ -0.55
RTN3-204ENST00000354497 CD70P32970 193 aa11.63□□□□□ -0.55
RTN3-204ENST00000354497 ASPAP45381 313 aa11.63□□□□□ -0.55
RTN3-204ENST00000354497 GPS2Q13227 327 aa11.63□□□□□ -0.55
RTN3-204ENST00000354497 SETDB1Q15047 1291 aa11.63□□□□□ -0.55
RTN3-204ENST00000354497 CST6Q15828 149 aa11.63□□□□□ -0.55
RTN3-204ENST00000354497 KMT5BQ4FZB7 885 aa11.63□□□□□ -0.55
RTN3-204ENST00000354497 C6orf132Q5T0Z8 1188 aa11.63□□□□□ -0.55
RTN3-204ENST00000354497 SFMBT2Q5VUG0 894 aa11.63□□□□□ -0.55
RTN3-204ENST00000354497 EPM2AIP1Q7L775 607 aaPredicted RBP11.63□□□□□ -0.55
RTN3-204ENST00000354497 LSMEM2Q8N112 164 aa11.63□□□□□ -0.55
RTN3-204ENST00000354497 OR14C36Q8NHC7 312 aa11.63□□□□□ -0.55
RTN3-204ENST00000354497 RNF217Q8TC41 542 aa11.63□□□□□ -0.55
RTN3-204ENST00000354497 VCPIP1Q96JH7 1222 aa11.63□□□□□ -0.55
RTN3-204ENST00000354497 DEPDC7Q96QD5 511 aa11.63□□□□□ -0.55
RTN3-204ENST00000354497 LMBRD1Q9NUN5 540 aa11.63□□□□□ -0.55
RTN3-204ENST00000354497 MYLKQ15746 1914 aa11.63□□□□□ -0.55
RTN3-204ENST00000354497 TBC1D3DA0A087WVF3 549 aa11.62□□□□□ -0.55
RTN3-204ENST00000354497 TBC1D3IA0A087WXS9 549 aa11.62□□□□□ -0.55
RTN3-204ENST00000354497 TBC1D3EA0A087X179 549 aa11.62□□□□□ -0.55
RTN3-204ENST00000354497 TBC1D3KA0A087X1G2 549 aa11.62□□□□□ -0.55
RTN3-204ENST00000354497 TBC1D3FA6NER0 549 aaPredicted RBP11.62□□□□□ -0.55
RTN3-204ENST00000354497 TBC1D3LB9A6J9 549 aa11.62□□□□□ -0.55
RTN3-204ENST00000354497 FFAR2O15552 330 aa11.62□□□□□ -0.55
RTN3-204ENST00000354497 TBL1XO60907 577 aa11.62□□□□□ -0.55
RTN3-204ENST00000354497 TBC1D3HP0C7X1 549 aa11.62□□□□□ -0.55
RTN3-204ENST00000354497 MAT2AP31153 395 aaKnown RBP11.62□□□□□ -0.55
RTN3-204ENST00000354497 SLC8A1P32418 973 aa11.62□□□□□ -0.55
RTN3-204ENST00000354497 CSRP3P50461 194 aa11.62□□□□□ -0.55
RTN3-204ENST00000354497 CCR5P51681 352 aa11.62□□□□□ -0.55
RTN3-204ENST00000354497 SGSHP51688 502 aa11.62□□□□□ -0.55
RTN3-204ENST00000354497 SNRPFP62306 86 aaKnown RBP11.62□□□□□ -0.55
RTN3-204ENST00000354497 DLG4P78352 724 aa11.62□□□□□ -0.55
RTN3-204ENST00000354497 NFATC3Q12968 1075 aa11.62□□□□□ -0.55
RTN3-204ENST00000354497 KCNJ12Q14500 433 aa11.62□□□□□ -0.55
RTN3-204ENST00000354497 PROX2Q3B8N5 592 aa11.62□□□□□ -0.55
RTN3-204ENST00000354497 ZNF394Q53GI3 561 aa11.62□□□□□ -0.55
RTN3-204ENST00000354497 PPP1R26Q5T8A7 1209 aaPredicted RBP11.62□□□□□ -0.55
RTN3-204ENST00000354497 TBC1D3GQ6DHY5 549 aa11.62□□□□□ -0.55
RTN3-204ENST00000354497 TBC1D3CQ6IPX1 549 aa11.62□□□□□ -0.55
RTN3-204ENST00000354497 NAPEPLDQ6IQ20 393 aa11.62□□□□□ -0.55
RTN3-204ENST00000354497 FAM173BQ6P4H8 233 aa11.62□□□□□ -0.55
RTN3-204ENST00000354497 SPATS2Q86XZ4 545 aaKnown RBP11.62□□□□□ -0.55
RTN3-204ENST00000354497 FAM217AQ8IXS0 508 aa11.62□□□□□ -0.55
RTN3-204ENST00000354497 TBC1D3Q8IZP1 549 aaPredicted RBP11.62□□□□□ -0.55
RTN3-204ENST00000354497 CACTIN-AS1Q8N1I8 211 aa11.62□□□□□ -0.55
RTN3-204ENST00000354497 ZNF276Q8N554 614 aa11.62□□□□□ -0.55
RTN3-204ENST00000354497 DDX51Q8N8A6 666 aaKnown RBP eCLIP11.62□□□□□ -0.55
RTN3-204ENST00000354497 GPATCH11Q8N954 259 aa11.62□□□□□ -0.55
RTN3-204ENST00000354497 WFDC5Q8TCV5 224 aa11.62□□□□□ -0.55
RTN3-204ENST00000354497 PARD3BQ8TEW8 1205 aa11.62□□□□□ -0.55
RTN3-204ENST00000354497 RNF139Q8WU17 664 aa11.62□□□□□ -0.55
RTN3-204ENST00000354497 HIC2Q96JB3 615 aa11.62□□□□□ -0.55
RTN3-204ENST00000354497 DUSP16Q9BY84 665 aa11.62□□□□□ -0.55
RTN3-204ENST00000354497 DNAI2Q9GZS0 605 aa11.62□□□□□ -0.55
RTN3-204ENST00000354497 TNMDQ9H2S6 317 aa11.62□□□□□ -0.55
RTN3-204ENST00000354497 STIM2Q9P246 746 aa11.62□□□□□ -0.55
RTN3-204ENST00000354497 TFIP11Q9UBB9 837 aaKnown RBP11.62□□□□□ -0.55
RTN3-204ENST00000354497 USP3Q9Y6I4 520 aa11.62□□□□□ -0.55
RTN3-204ENST00000354497 NAV2Q8IVL1 2488 aa11.62□□□□□ -0.55
RTN3-204ENST00000354497 TRIM38O00635 465 aa11.61□□□□□ -0.55
RTN3-204ENST00000354497 CSO75390 466 aaKnown RBP11.61□□□□□ -0.55
RTN3-204ENST00000354497 RPN1P04843 607 aaKnown RBP11.61□□□□□ -0.55
RTN3-204ENST00000354497 RXRGP48443 463 aa11.61□□□□□ -0.55
RTN3-204ENST00000354497 PPP2CBP62714 309 aa11.61□□□□□ -0.55
RTN3-204ENST00000354497 PPP2CAP67775 309 aa11.61□□□□□ -0.55
RTN3-204ENST00000354497 TPM4P67936 248 aa11.61□□□□□ -0.55
RTN3-204ENST00000354497 AMPD3Q01432 767 aa11.61□□□□□ -0.55
RTN3-204ENST00000354497 SND1Q7KZF4 910 aaKnown RBP eCLIP11.61□□□□□ -0.551e-9■■■■□ 22.5
RTN3-204ENST00000354497 MFN1Q8IWA4 741 aa11.61□□□□□ -0.55
RTN3-204ENST00000354497 NDRG1Q92597 394 aaKnown RBP11.61□□□□□ -0.55
RTN3-204ENST00000354497 TAF4BQ92750 862 aa11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms