RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 NMRAL1Q9HBL8 299 aa12.84□□□□□ -0.35
COL6A3-203ENST00000353578 PLOD3O60568 738 aa12.83□□□□□ -0.35
COL6A3-203ENST00000353578 FAM220AQ7Z4H9 259 aa12.83□□□□□ -0.35
COL6A3-203ENST00000353578 TRMOQ9BU70 441 aa12.83□□□□□ -0.35
COL6A3-203ENST00000353578 MORF4L1Q9UBU8 362 aa12.83□□□□□ -0.35
COL6A3-203ENST00000353578 SPACA6W5XKT8 324 aa12.83□□□□□ -0.35
COL6A3-203ENST00000353578 FOXR2Q6PJQ5 311 aa12.83□□□□□ -0.36
COL6A3-203ENST00000353578 DSTYKQ6XUX3 929 aa12.83□□□□□ -0.36
COL6A3-203ENST00000353578 CHPFQ8IZ52 775 aa12.83□□□□□ -0.36
COL6A3-203ENST00000353578 CHKBQ9Y259 395 aa12.83□□□□□ -0.36
COL6A3-203ENST00000353578 ASLP04424 464 aa12.83□□□□□ -0.36
COL6A3-203ENST00000353578 CYP1A1P04798 512 aaPredicted RBP12.83□□□□□ -0.36
COL6A3-203ENST00000353578 FYNP06241 537 aa12.83□□□□□ -0.36
COL6A3-203ENST00000353578 FXR2P51116 673 aaKnown RBP eCLIP12.83□□□□□ -0.36
COL6A3-203ENST00000353578 CCNG1P51959 295 aa12.83□□□□□ -0.36
COL6A3-203ENST00000353578 KPNA1P52294 538 aaPredicted RBP12.83□□□□□ -0.36
COL6A3-203ENST00000353578 P2RY8Q86VZ1 359 aa12.83□□□□□ -0.36
COL6A3-203ENST00000353578 TOP1MTQ969P6 601 aa12.83□□□□□ -0.36
COL6A3-203ENST00000353578 PHF20Q9BVI0 1012 aa12.83□□□□□ -0.36
COL6A3-203ENST00000353578 TAS2R7Q9NYW3 318 aa12.83□□□□□ -0.36
COL6A3-203ENST00000353578 GMIPQ9P107 970 aa12.83□□□□□ -0.36
COL6A3-203ENST00000353578 ASTN2O75129 1339 aaPredicted RBP12.83□□□□□ -0.36
COL6A3-203ENST00000353578 RGS10O43665 173 aa12.83□□□□□ -0.36
COL6A3-203ENST00000353578 MVKQ03426 396 aa12.83□□□□□ -0.36
COL6A3-203ENST00000353578 SMU1Q2TAY7 513 aa12.83□□□□□ -0.36
COL6A3-203ENST00000353578 DUS1LQ6P1R4 473 aaKnown RBP12.83□□□□□ -0.36
COL6A3-203ENST00000353578 TEX47Q8TBZ9 253 aa12.83□□□□□ -0.36
COL6A3-203ENST00000353578 TCP10LQ8TDR4 215 aa12.83□□□□□ -0.36
COL6A3-203ENST00000353578 OSBP2Q969R2 916 aa12.83□□□□□ -0.36
COL6A3-203ENST00000353578 PCIF1Q9H4Z3 704 aa12.83□□□□□ -0.36
COL6A3-203ENST00000353578 RBAKQ9NYW8 714 aaPredicted RBP12.83□□□□□ -0.36
COL6A3-203ENST00000353578 IGSF9BQ9UPX0 1349 aa12.83□□□□□ -0.36
COL6A3-203ENST00000353578 KCNH1O95259 989 aa12.83□□□□□ -0.36
COL6A3-203ENST00000353578 TRIM23P36406 574 aa12.83□□□□□ -0.36
COL6A3-203ENST00000353578 TGM3Q08188 693 aa12.83□□□□□ -0.36
COL6A3-203ENST00000353578 MPP3Q13368 585 aa12.83□□□□□ -0.36
COL6A3-203ENST00000353578 RRP1BQ14684 758 aaKnown RBP12.83□□□□□ -0.36
COL6A3-203ENST00000353578 LLGL1Q15334 1064 aa12.83□□□□□ -0.36
COL6A3-203ENST00000353578 GPR107Q5VW38 600 aa12.83□□□□□ -0.36
COL6A3-203ENST00000353578 USPL1Q5W0Q7 1092 aa12.83□□□□□ -0.36
COL6A3-203ENST00000353578 PFDN5Q99471 154 aa12.83□□□□□ -0.36
COL6A3-203ENST00000353578 CATSPERZQ9NTU4 200 aa12.83□□□□□ -0.36
COL6A3-203ENST00000353578 AHSPQ9NZD4 102 aa12.83□□□□□ -0.36
COL6A3-203ENST00000353578 POLD2P49005 469 aa12.83□□□□□ -0.36
COL6A3-203ENST00000353578 GJA9P57773 515 aa12.83□□□□□ -0.36
COL6A3-203ENST00000353578 FAM126BQ8IXS8 530 aa12.83□□□□□ -0.36
COL6A3-203ENST00000353578 NRKQ7Z2Y5 1582 aa12.83□□□□□ -0.36
COL6A3-203ENST00000353578 PPP1R3GB7ZBB8 358 aa12.83□□□□□ -0.36
COL6A3-203ENST00000353578 RBM34P42696 430 aaKnown RBP12.83□□□□□ -0.36
COL6A3-203ENST00000353578 RAB5BP61020 215 aa12.83□□□□□ -0.36
COL6A3-203ENST00000353578 MOGQ16653 247 aa12.83□□□□□ -0.36
COL6A3-203ENST00000353578 ZBED5Q49AG3 693 aa12.83□□□□□ -0.36
COL6A3-203ENST00000353578 RANBP3Q9H6Z4 567 aaPredicted RBP12.83□□□□□ -0.36
COL6A3-203ENST00000353578 AFDNP55196 1824 aaKnown RBP12.83□□□□□ -0.36
COL6A3-203ENST00000353578 LINC00854A0A1B0GVQ3 168 aa12.83□□□□□ -0.36
COL6A3-203ENST00000353578 GPIP06744 558 aa12.83□□□□□ -0.36
COL6A3-203ENST00000353578 C1QBPQ07021 282 aaKnown RBP12.83□□□□□ -0.36
COL6A3-203ENST00000353578 TBX2Q13207 712 aaPredicted RBP12.83□□□□□ -0.36
COL6A3-203ENST00000353578 EIF2S3LQ2VIR3 472 aaKnown RBP12.83□□□□□ -0.36
COL6A3-203ENST00000353578 KIF18BQ86Y91 864 aa12.83□□□□□ -0.36
COL6A3-203ENST00000353578 S100A13Q99584 98 aa12.83□□□□□ -0.36
COL6A3-203ENST00000353578 SLC25A13Q9UJS0 675 aa12.83□□□□□ -0.36
COL6A3-203ENST00000353578 MAN2B2Q9Y2E5 1009 aa12.83□□□□□ -0.36
COL6A3-203ENST00000353578 FOXN3O00409 490 aaPredicted RBP12.82□□□□□ -0.36
COL6A3-203ENST00000353578 NR2F6P10588 404 aa12.82□□□□□ -0.36
COL6A3-203ENST00000353578 RPA1P27694 616 aa12.82□□□□□ -0.36
COL6A3-203ENST00000353578 NNMTP40261 264 aa12.82□□□□□ -0.36
COL6A3-203ENST00000353578 AMPD2Q01433 879 aa12.82□□□□□ -0.36
COL6A3-203ENST00000353578 SLC39A6Q13433 755 aa12.82□□□□□ -0.36
COL6A3-203ENST00000353578 PTPN21Q16825 1174 aa12.82□□□□□ -0.36
COL6A3-203ENST00000353578 PITRM1Q5JRX3 1037 aa12.82□□□□□ -0.36
COL6A3-203ENST00000353578 FOXR1Q6PIV2 292 aa12.82□□□□□ -0.36
COL6A3-203ENST00000353578 PIWIL4Q7Z3Z4 852 aaKnown RBP12.82□□□□□ -0.36
COL6A3-203ENST00000353578 THAP5Q7Z6K1 395 aa12.82□□□□□ -0.36
COL6A3-203ENST00000353578 ZNF669Q96BR6 464 aaPredicted RBP12.82□□□□□ -0.36
COL6A3-203ENST00000353578 PHB2Q99623 299 aa12.82□□□□□ -0.36
COL6A3-203ENST00000353578 FETUBQ9UGM5 382 aa12.82□□□□□ -0.36
COL6A3-203ENST00000353578 GMPPBQ9Y5P6 360 aa12.82□□□□□ -0.36
COL6A3-203ENST00000353578 CHADO15335 359 aa12.82□□□□□ -0.36
COL6A3-203ENST00000353578 SYTL3Q4VX76 610 aa12.82□□□□□ -0.36
COL6A3-203ENST00000353578 OTUD3Q5T2D3 398 aaPredicted RBP12.82□□□□□ -0.36
COL6A3-203ENST00000353578 LNPEPQ9UIQ6 1025 aa12.82□□□□□ -0.36
COL6A3-203ENST00000353578 AKT3Q9Y243 479 aa12.82□□□□□ -0.36
COL6A3-203ENST00000353578 XDHP47989 1333 aa12.82□□□□□ -0.36
COL6A3-203ENST00000353578 C2orf74A8MZ97 194 aa12.82□□□□□ -0.36
COL6A3-203ENST00000353578 G3V2T6 193 aa12.82□□□□□ -0.36
COL6A3-203ENST00000353578 FEN1P39748 380 aaKnown RBP12.82□□□□□ -0.36
COL6A3-203ENST00000353578 INO80EQ8NBZ0 244 aaPredicted RBP12.82□□□□□ -0.36
COL6A3-203ENST00000353578 ZNF540Q8NDQ6 660 aa12.82□□□□□ -0.36
COL6A3-203ENST00000353578 BMP3P12645 472 aa12.82□□□□□ -0.36
COL6A3-203ENST00000353578 COX4I1P13073 169 aa12.82□□□□□ -0.36
COL6A3-203ENST00000353578 RHEBQ15382 184 aa12.82□□□□□ -0.36
COL6A3-203ENST00000353578 VMACQ2NL98 169 aa12.82□□□□□ -0.36
COL6A3-203ENST00000353578 TRPV3Q8NET8 790 aa12.82□□□□□ -0.36
COL6A3-203ENST00000353578 CCDC107Q8WV48 283 aa12.82□□□□□ -0.36
COL6A3-203ENST00000353578 MKL1Q969V6 931 aa12.82□□□□□ -0.36
COL6A3-203ENST00000353578 ASIC4Q96FT7 647 aa12.82□□□□□ -0.36
COL6A3-203ENST00000353578 ZFYVE28Q9HCC9 887 aa12.82□□□□□ -0.36
COL6A3-203ENST00000353578 LEF1Q9UJU2 399 aaPredicted RBP12.82□□□□□ -0.36
COL6A3-203ENST00000353578 MEMO1Q9Y316 297 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 70.2 ms