RNA–Protein interactions for RNA: ENST00000340541.4

VAPA-201, Transcript of VAMP associated protein A, humanhuman

TSL 5 BASIC

Gene VAPA, Length 1,227 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPA-201ENST00000340541 ZNF683Q8IZ20 524 aa15.9■□□□□ 0.14
VAPA-201ENST00000340541 ABCA7Q8IZY2 2146 aa15.9■□□□□ 0.14
VAPA-201ENST00000340541 AHI1Q8N157 1196 aa15.9■□□□□ 0.14
VAPA-201ENST00000340541 CARNMT1Q8N4J0 409 aa15.9■□□□□ 0.14
VAPA-201ENST00000340541 C3orf20Q8ND61 904 aa15.9■□□□□ 0.14
VAPA-201ENST00000340541 RXFP2Q8WXD0 754 aa15.9■□□□□ 0.14
VAPA-201ENST00000340541 IGSF8Q969P0 613 aa15.9■□□□□ 0.14
VAPA-201ENST00000340541 SPACA7Q96KW9 195 aa15.9■□□□□ 0.14
VAPA-201ENST00000340541 TPSD1Q9BZJ3 242 aa15.9■□□□□ 0.14
VAPA-201ENST00000340541 CIPCQ9C0C6 399 aa15.9■□□□□ 0.14
VAPA-201ENST00000340541 XPO4Q9C0E2 1151 aaKnown RBP15.9■□□□□ 0.14
VAPA-201ENST00000340541 TKTL2Q9H0I9 626 aa15.9■□□□□ 0.14
VAPA-201ENST00000340541 WDCPQ9H6R7 721 aa15.9■□□□□ 0.14
VAPA-201ENST00000340541 TMPRSS4Q9NRS4 437 aa15.9■□□□□ 0.14
VAPA-201ENST00000340541 RAD54BQ9Y620 910 aa15.9■□□□□ 0.14
VAPA-201ENST00000340541 NUP205Q92621 2012 aa15.9■□□□□ 0.14
VAPA-201ENST00000340541 CHD8Q9HCK8 2581 aa15.89■□□□□ 0.13
VAPA-201ENST00000340541 THADAQ6YHU6 1953 aa15.89■□□□□ 0.13
VAPA-201ENST00000340541 LNP1A1A4G5 178 aa15.89■□□□□ 0.13
VAPA-201ENST00000340541 C4orf47A7E2U8 309 aa15.89■□□□□ 0.13
VAPA-201ENST00000340541 DDX3XO00571 662 aaKnown RBP eCLIP15.89■□□□□ 0.131e-55■■■■□ 24.4
VAPA-201ENST00000340541 NPC1O15118 1278 aa15.89■□□□□ 0.13
VAPA-201ENST00000340541 GYPCP04921 128 aa15.89■□□□□ 0.13
VAPA-201ENST00000340541 KRT3P12035 628 aa15.89■□□□□ 0.13
VAPA-201ENST00000340541 SKILP12757 684 aa15.89■□□□□ 0.13
VAPA-201ENST00000340541 GABRG2P18507 467 aa15.89■□□□□ 0.13
VAPA-201ENST00000340541 TNFAIP3P21580 790 aa15.89■□□□□ 0.13
VAPA-201ENST00000340541 RDXP35241 583 aaKnown RBP15.89■□□□□ 0.13
VAPA-201ENST00000340541 RFC1P35251 1148 aaPredicted RBP15.89■□□□□ 0.13
VAPA-201ENST00000340541 PTPN9P43378 593 aa15.89■□□□□ 0.13
VAPA-201ENST00000340541 C15orf59Q2T9L4 293 aaPredicted RBP15.89■□□□□ 0.13
VAPA-201ENST00000340541 PPP1R15BQ5SWA1 713 aa15.89■□□□□ 0.13
VAPA-201ENST00000340541 SH3PXD2AQ5TCZ1 1133 aa15.89■□□□□ 0.13
VAPA-201ENST00000340541 HGSNATQ68CP4 663 aa15.89■□□□□ 0.13
VAPA-201ENST00000340541 MBLAC2Q68D91 279 aa15.89■□□□□ 0.13
VAPA-201ENST00000340541 TCEAL6Q6IPX3 200 aa15.89■□□□□ 0.13
VAPA-201ENST00000340541 SDE2Q6IQ49 451 aa15.89■□□□□ 0.13
VAPA-201ENST00000340541 CIR1Q86X95 450 aaPredicted RBP15.89■□□□□ 0.13
VAPA-201ENST00000340541 MCOLN2Q8IZK6 566 aa15.89■□□□□ 0.13
VAPA-201ENST00000340541 ZNF557Q8N988 423 aaPredicted RBP15.89■□□□□ 0.13
VAPA-201ENST00000340541 RNF214Q8ND24 703 aa15.89■□□□□ 0.13
VAPA-201ENST00000340541 UCMAQ8WVF2 138 aa15.89■□□□□ 0.13
VAPA-201ENST00000340541 HMGB4Q8WW32 186 aa15.89■□□□□ 0.13
VAPA-201ENST00000340541 CENPIQ92674 756 aaPredicted RBP15.89■□□□□ 0.13
VAPA-201ENST00000340541 TCEAL3Q969E4 200 aa15.89■□□□□ 0.13
VAPA-201ENST00000340541 TMEM245Q9H330 911 aa15.89■□□□□ 0.13
VAPA-201ENST00000340541 TMEM9BQ9NQ34 198 aa15.89■□□□□ 0.13
VAPA-201ENST00000340541 TMEM51Q9NW97 253 aa15.89■□□□□ 0.13
VAPA-201ENST00000340541 CAPN11Q9UMQ6 739 aa15.89■□□□□ 0.13
VAPA-201ENST00000340541 INVSQ9Y283 1065 aa15.89■□□□□ 0.13
VAPA-201ENST00000340541 SNX10Q9Y5X0 201 aa15.89■□□□□ 0.13
VAPA-201ENST00000340541 TYW5A2RUC4 315 aaKnown RBP15.88■□□□□ 0.13
VAPA-201ENST00000340541 SIGLEC16A6NMB1 481 aa15.88■□□□□ 0.13
VAPA-201ENST00000340541 MAP3K13O43283 966 aa15.88■□□□□ 0.13
VAPA-201ENST00000340541 KRT37O76014 449 aa15.88■□□□□ 0.13
VAPA-201ENST00000340541 CEACAM1P13688 526 aa15.88■□□□□ 0.13
VAPA-201ENST00000340541 PDGFRAP16234 1089 aa15.88■□□□□ 0.13
VAPA-201ENST00000340541 CSRP1P21291 193 aaKnown RBP15.88■□□□□ 0.13
VAPA-201ENST00000340541 BCKDHBP21953 392 aa15.88■□□□□ 0.13
VAPA-201ENST00000340541 RRM1P23921 792 aa15.88■□□□□ 0.13
VAPA-201ENST00000340541 PRKCHP24723 683 aa15.88■□□□□ 0.13
VAPA-201ENST00000340541 HOXD12P35452 270 aa15.88■□□□□ 0.13
VAPA-201ENST00000340541 ATP11AP98196 1134 aa15.88■□□□□ 0.13
VAPA-201ENST00000340541 KLHL30Q0D2K2 578 aa15.88■□□□□ 0.13
VAPA-201ENST00000340541 CDH18Q13634 790 aa15.88■□□□□ 0.13
VAPA-201ENST00000340541 TTC39BQ5VTQ0 682 aaPredicted RBP15.88■□□□□ 0.13
VAPA-201ENST00000340541 SND1Q7KZF4 910 aaKnown RBP eCLIP15.88■□□□□ 0.134e-15■□□□□ 9.2
VAPA-201ENST00000340541 FAM131BQ86XD5 332 aa15.88■□□□□ 0.13
VAPA-201ENST00000340541 DNAAF5Q86Y56 855 aa15.88■□□□□ 0.13
VAPA-201ENST00000340541 CCAR2Q8N163 923 aaKnown RBP15.88■□□□□ 0.13
VAPA-201ENST00000340541 CYB5D2Q8WUJ1 264 aa15.88■□□□□ 0.13
VAPA-201ENST00000340541 SYN2Q92777 582 aaPredicted RBP15.88■□□□□ 0.13
VAPA-201ENST00000340541 TTC17Q96AE7 1141 aa15.88■□□□□ 0.13
VAPA-201ENST00000340541 ERLEC1Q96DZ1 483 aa15.88■□□□□ 0.13
VAPA-201ENST00000340541 VANGL2Q9ULK5 521 aa15.88■□□□□ 0.13
VAPA-201ENST00000340541 ITIH6Q6UXX5 1313 aa15.88■□□□□ 0.13
VAPA-201ENST00000340541 DOCK4Q8N1I0 1966 aa15.87■□□□□ 0.13
VAPA-201ENST00000340541 A0A1B0GVM2 712 aa15.87■□□□□ 0.13
VAPA-201ENST00000340541 TCAF2A6NFQ2 919 aa15.87■□□□□ 0.13
VAPA-201ENST00000340541 H0Y626 953 aa15.87■□□□□ 0.13
VAPA-201ENST00000340541 CDX4O14627 284 aaPredicted RBP15.87■□□□□ 0.13
VAPA-201ENST00000340541 DLDP09622 509 aaKnown RBP15.87■□□□□ 0.13
VAPA-201ENST00000340541 NDUFV2P19404 249 aa15.87■□□□□ 0.13
VAPA-201ENST00000340541 SDC4P31431 198 aa15.87■□□□□ 0.13
VAPA-201ENST00000340541 DHPSP49366 369 aaPredicted RBP15.87■□□□□ 0.13
VAPA-201ENST00000340541 HDAC4P56524 1084 aa15.87■□□□□ 0.13
VAPA-201ENST00000340541 RPL7AP62424 266 aaKnown RBP15.87■□□□□ 0.13
VAPA-201ENST00000340541 ZBED6P86452 979 aa15.87■□□□□ 0.13
VAPA-201ENST00000340541 MAP7D1Q3KQU3 841 aa15.87■□□□□ 0.13
VAPA-201ENST00000340541 PITRM1Q5JRX3 1037 aa15.87■□□□□ 0.13
VAPA-201ENST00000340541 RABGAP1LQ5R372 815 aa15.87■□□□□ 0.13
VAPA-201ENST00000340541 CXorf57Q6NSI4 855 aaKnown RBP15.87■□□□□ 0.13
VAPA-201ENST00000340541 PSAPL1Q6NUJ1 521 aa15.87■□□□□ 0.13
VAPA-201ENST00000340541 WDR59Q6PJI9 974 aa15.87■□□□□ 0.13
VAPA-201ENST00000340541 STRADAQ7RTN6 431 aa15.87■□□□□ 0.13
VAPA-201ENST00000340541 SYT12Q8IV01 421 aa15.87■□□□□ 0.13
VAPA-201ENST00000340541 OR52K2Q8NGK3 314 aa15.87■□□□□ 0.13
VAPA-201ENST00000340541 CPLX3Q8WVH0 158 aa15.87■□□□□ 0.13
VAPA-201ENST00000340541 RLN3Q8WXF3 142 aa15.87■□□□□ 0.13
VAPA-201ENST00000340541 IQCDQ96DY2 449 aa15.87■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms