RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 PCDHAC2Q9Y5I4 1007 aa8.86□□□□□ -0.99
RTN3-202ENST00000339997 WASF2Q9Y6W5 498 aa8.86□□□□□ -0.99
RTN3-202ENST00000339997 ADRB2P07550 413 aa8.86□□□□□ -0.99
RTN3-202ENST00000339997 PSMB4P28070 264 aa8.86□□□□□ -0.99
RTN3-202ENST00000339997 CCNFP41002 786 aa8.86□□□□□ -0.99
RTN3-202ENST00000339997 SEPHS1P49903 392 aa8.86□□□□□ -0.99
RTN3-202ENST00000339997 SLC20A2Q08357 652 aa8.86□□□□□ -0.99
RTN3-202ENST00000339997 RALGDSQ12967 914 aa8.86□□□□□ -0.99
RTN3-202ENST00000339997 PRKAA1Q13131 559 aa8.86□□□□□ -0.99
RTN3-202ENST00000339997 CTBP1Q13363 440 aa8.86□□□□□ -0.99
RTN3-202ENST00000339997 ZC3H12AQ5D1E8 599 aaKnown RBP8.86□□□□□ -0.99
RTN3-202ENST00000339997 CACHD1Q5VU97 1274 aa8.86□□□□□ -0.99
RTN3-202ENST00000339997 ZNF57Q68EA5 555 aaPredicted RBP8.86□□□□□ -0.99
RTN3-202ENST00000339997 KLHL17Q6TDP4 642 aa8.86□□□□□ -0.99
RTN3-202ENST00000339997 ARHGAP36Q6ZRI8 547 aa8.86□□□□□ -0.99
RTN3-202ENST00000339997 IRF2BP2Q7Z5L9 587 aa8.86□□□□□ -0.99
RTN3-202ENST00000339997 DHDDSQ86SQ9 333 aa8.86□□□□□ -0.99
RTN3-202ENST00000339997 FAM228AQ86W67 206 aa8.86□□□□□ -0.99
RTN3-202ENST00000339997 NPAS2Q99743 824 aa8.86□□□□□ -0.99
RTN3-202ENST00000339997 CIB1Q99828 191 aa8.86□□□□□ -0.99
RTN3-202ENST00000339997 PIDD1Q9HB75 910 aa8.86□□□□□ -0.99
RTN3-202ENST00000339997 AP4B1Q9Y6B7 739 aa8.86□□□□□ -0.99
RTN3-202ENST00000339997 ASB14A6NK59 587 aa8.85□□□□□ -0.99
RTN3-202ENST00000339997 PCP4L1A6NKN8 68 aa8.85□□□□□ -0.99
RTN3-202ENST00000339997 CNOT3O75175 753 aaKnown RBP8.85□□□□□ -0.99
RTN3-202ENST00000339997 ZNF286BP0CG31 522 aa8.85□□□□□ -0.99
RTN3-202ENST00000339997 VDRP11473 427 aa8.85□□□□□ -0.99
RTN3-202ENST00000339997 NPY2RP49146 381 aa8.85□□□□□ -0.99
RTN3-202ENST00000339997 PSMD7P51665 324 aa8.85□□□□□ -0.99
RTN3-202ENST00000339997 ARMCX4Q5H9R4 360 aa8.85□□□□□ -0.99
RTN3-202ENST00000339997 CDH24Q86UP0 819 aa8.85□□□□□ -0.99
RTN3-202ENST00000339997 DEFB106AQ8N104 65 aa8.85□□□□□ -0.99
RTN3-202ENST00000339997 FAM47BQ8NA70 645 aa8.85□□□□□ -0.99
RTN3-202ENST00000339997 POC5Q8NA72 575 aa8.85□□□□□ -0.99
RTN3-202ENST00000339997 UCMAQ8WVF2 138 aa8.85□□□□□ -0.99
RTN3-202ENST00000339997 C1orf50Q9BV19 199 aa8.85□□□□□ -0.99
RTN3-202ENST00000339997 KLHL1Q9NR64 748 aa8.85□□□□□ -0.99
RTN3-202ENST00000339997 RNF181Q9P0P0 153 aa8.85□□□□□ -0.99
RTN3-202ENST00000339997 DGKBQ9Y6T7 804 aa8.85□□□□□ -0.99
RTN3-202ENST00000339997 PRRG1O14668 218 aa8.85□□□□□ -0.99
RTN3-202ENST00000339997 FFAR3O14843 346 aa8.85□□□□□ -0.99
RTN3-202ENST00000339997 GPR42O15529 346 aa8.85□□□□□ -0.99
RTN3-202ENST00000339997 VPS26AO75436 327 aa8.85□□□□□ -0.99
RTN3-202ENST00000339997 F7P08709 466 aaPredicted RBP8.85□□□□□ -0.99
RTN3-202ENST00000339997 SEMA5AQ13591 1074 aa8.85□□□□□ -0.99
RTN3-202ENST00000339997 SWT1Q5T5J6 900 aaKnown RBP8.85□□□□□ -0.99
RTN3-202ENST00000339997 FAM43BQ6ZT52 329 aaPredicted RBP8.85□□□□□ -0.99
RTN3-202ENST00000339997 ST13P5Q8NFI4 369 aaPredicted RBP8.85□□□□□ -0.99
RTN3-202ENST00000339997 SLC2A14Q8TDB8 520 aa8.85□□□□□ -0.99
RTN3-202ENST00000339997 DNAJC19Q96DA6 116 aa8.85□□□□□ -0.99
RTN3-202ENST00000339997 PDCD2LQ9BRP1 358 aa8.85□□□□□ -0.99
RTN3-202ENST00000339997 TIPINQ9BVW5 301 aa8.85□□□□□ -0.99
RTN3-202ENST00000339997 CINPQ9BW66 212 aaPredicted RBP8.85□□□□□ -0.99
RTN3-202ENST00000339997 ZFP14Q9HCL3 533 aa8.85□□□□□ -0.99
RTN3-202ENST00000339997 RIMS1Q86UR5 1692 aaKnown RBP8.85□□□□□ -0.99
RTN3-202ENST00000339997 ADGRA3Q8IWK6 1321 aa8.85□□□□□ -0.99
RTN3-202ENST00000339997 PSMD12O00232 456 aaPredicted RBP8.85□□□□□ -0.99
RTN3-202ENST00000339997 POMCP01189 267 aa8.85□□□□□ -0.99
RTN3-202ENST00000339997 APOA4P06727 396 aa8.85□□□□□ -0.99
RTN3-202ENST00000339997 GJB1P08034 283 aa8.85□□□□□ -0.99
RTN3-202ENST00000339997 ADRA2BP18089 450 aa8.85□□□□□ -0.99
RTN3-202ENST00000339997 SLC12A3P55017 1021 aa8.85□□□□□ -0.99
RTN3-202ENST00000339997 XRCC4Q13426 336 aa8.85□□□□□ -0.99
RTN3-202ENST00000339997 MAMLD1Q13495 774 aa8.85□□□□□ -0.99
RTN3-202ENST00000339997 PDK4Q16654 411 aa8.85□□□□□ -0.99
RTN3-202ENST00000339997 SHROOM1Q2M3G4 852 aaPredicted RBP8.85□□□□□ -0.99
RTN3-202ENST00000339997 HHIPL2Q6UWX4 724 aa8.85□□□□□ -0.99
RTN3-202ENST00000339997 ZNF621Q6ZSS3 439 aa8.85□□□□□ -0.99
RTN3-202ENST00000339997 FASTKD5Q7L8L6 764 aaKnown RBP8.85□□□□□ -0.99
RTN3-202ENST00000339997 LUZP2Q86TE4 346 aa8.85□□□□□ -0.99
RTN3-202ENST00000339997 ZDHHC13Q8IUH4 622 aa8.85□□□□□ -0.99
RTN3-202ENST00000339997 RBM15BQ8NDT2 890 aaKnown RBP8.85□□□□□ -0.99
RTN3-202ENST00000339997 URGCPQ8TCY9 931 aa8.85□□□□□ -0.99
RTN3-202ENST00000339997 SYTL5Q8TDW5 730 aaPredicted RBP8.85□□□□□ -0.99
RTN3-202ENST00000339997 FAM151AQ8WW52 585 aa8.85□□□□□ -0.99
RTN3-202ENST00000339997 HTRA1Q92743 480 aa8.85□□□□□ -0.99
RTN3-202ENST00000339997 CENPTQ96BT3 561 aa8.85□□□□□ -0.99
RTN3-202ENST00000339997 RNFT2Q96EX2 444 aa8.85□□□□□ -0.99
RTN3-202ENST00000339997 CGRRF1Q99675 332 aa8.85□□□□□ -0.99
RTN3-202ENST00000339997 EPB41L1Q9H4G0 881 aa8.85□□□□□ -0.99
RTN3-202ENST00000339997 ELOVL6Q9H5J4 265 aa8.85□□□□□ -0.99
RTN3-202ENST00000339997 DMAP1Q9NPF5 467 aaPredicted RBP8.85□□□□□ -0.99
RTN3-202ENST00000339997 XPNPEP3Q9NQH7 507 aa8.85□□□□□ -0.99
RTN3-202ENST00000339997 TRPC4Q9UBN4 977 aa8.85□□□□□ -0.99
RTN3-202ENST00000339997 ATP6V1HQ9UI12 483 aa8.85□□□□□ -0.99
RTN3-202ENST00000339997 STARD13Q9Y3M8 1113 aa8.85□□□□□ -0.99
RTN3-202ENST00000339997 N6AMT1Q9Y5N5 214 aa8.85□□□□□ -0.99
RTN3-202ENST00000339997 NUMA1Q14980 2115 aa8.85□□□□□ -0.99
RTN3-202ENST00000339997 TNPO2O14787 897 aaKnown RBP8.85□□□□□ -0.99
RTN3-202ENST00000339997 TRIM24O15164 1050 aa8.85□□□□□ -0.99
RTN3-202ENST00000339997 SEC22BO75396 215 aa8.85□□□□□ -0.99
RTN3-202ENST00000339997 TIPRLO75663 272 aa8.85□□□□□ -0.99
RTN3-202ENST00000339997 SOX6P35712 828 aa8.85□□□□□ -0.99
RTN3-202ENST00000339997 RGS2P41220 211 aa8.85□□□□□ -0.99
RTN3-202ENST00000339997 ACADSBP45954 432 aa8.85□□□□□ -0.99
RTN3-202ENST00000339997 CD151P48509 253 aa8.85□□□□□ -0.99
RTN3-202ENST00000339997 CCT3P49368 545 aaKnown RBP8.85□□□□□ -0.99
RTN3-202ENST00000339997 PPP4CP60510 307 aa8.85□□□□□ -0.99
RTN3-202ENST00000339997 CNTN2Q02246 1040 aa8.85□□□□□ -0.99
RTN3-202ENST00000339997 OLFML1Q6UWY5 402 aa8.85□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms