RNA–Protein interactions for RNA: ENST00000337299.6

COL2A1-201, Transcript of collagen type II alpha 1 chain, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene COL2A1, Length 4,257 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1-201ENST00000337299 HLA-DPA1P20036 260 aa13.51□□□□□ -0.25
COL2A1-201ENST00000337299 YAP1P46937 504 aaKnown RBP13.51□□□□□ -0.25
COL2A1-201ENST00000337299 GDF10P55107 478 aa13.51□□□□□ -0.25
COL2A1-201ENST00000337299 CDH8P55286 799 aa13.51□□□□□ -0.25
COL2A1-201ENST00000337299 MAP3K7CLP57077 242 aa13.51□□□□□ -0.25
COL2A1-201ENST00000337299 PRKD1Q15139 912 aaPredicted RBP13.51□□□□□ -0.25
COL2A1-201ENST00000337299 PLEKHG4Q58EX7 1191 aa13.51□□□□□ -0.25
COL2A1-201ENST00000337299 SAMD4BQ5PRF9 694 aaKnown RBP13.51□□□□□ -0.25
COL2A1-201ENST00000337299 TMEM214Q6NUQ4 689 aaKnown RBP13.51□□□□□ -0.25
COL2A1-201ENST00000337299 GK5Q6ZS86 529 aa13.51□□□□□ -0.25
COL2A1-201ENST00000337299 HORMAD1Q86X24 394 aa13.51□□□□□ -0.25
COL2A1-201ENST00000337299 TDRPQ86YL5 185 aa13.51□□□□□ -0.25
COL2A1-201ENST00000337299 CBR4Q8N4T8 237 aa13.51□□□□□ -0.25
COL2A1-201ENST00000337299 RIT2Q99578 217 aa13.51□□□□□ -0.25
COL2A1-201ENST00000337299 C17orf80Q9BSJ5 609 aa13.51□□□□□ -0.25
COL2A1-201ENST00000337299 PCDH18Q9HCL0 1135 aa13.51□□□□□ -0.25
COL2A1-201ENST00000337299 PCDHAC2Q9Y5I4 1007 aa13.51□□□□□ -0.25
COL2A1-201ENST00000337299 FADS3Q9Y5Q0 445 aa13.51□□□□□ -0.25
COL2A1-201ENST00000337299 PCP4L1A6NKN8 68 aa13.51□□□□□ -0.25
COL2A1-201ENST00000337299 FBP2O00757 339 aa13.51□□□□□ -0.25
COL2A1-201ENST00000337299 CNTFP26441 200 aa13.51□□□□□ -0.25
COL2A1-201ENST00000337299 SLC7A2P52569 658 aa13.51□□□□□ -0.25
COL2A1-201ENST00000337299 ADGRE1Q14246 886 aa13.51□□□□□ -0.25
COL2A1-201ENST00000337299 C15orf59Q2T9L4 293 aaPredicted RBP13.51□□□□□ -0.25
COL2A1-201ENST00000337299 FAM160B1Q5W0V3 765 aa13.51□□□□□ -0.25
COL2A1-201ENST00000337299 MOXD1Q6UVY6 613 aa13.51□□□□□ -0.25
COL2A1-201ENST00000337299 FAM131BQ86XD5 332 aa13.51□□□□□ -0.25
COL2A1-201ENST00000337299 TMC2Q8TDI7 906 aa13.51□□□□□ -0.25
COL2A1-201ENST00000337299 C7orf43Q8WVR3 580 aa13.51□□□□□ -0.25
COL2A1-201ENST00000337299 MRPL4Q9BYD3 311 aaKnown RBP13.51□□□□□ -0.25
COL2A1-201ENST00000337299 PCDHAC1Q9H158 963 aa13.51□□□□□ -0.25
COL2A1-201ENST00000337299 RNF181Q9P0P0 153 aa13.51□□□□□ -0.25
COL2A1-201ENST00000337299 MOSPD1Q9UJG1 213 aa13.51□□□□□ -0.25
COL2A1-201ENST00000337299 C3orf70A6NLC5 250 aaPredicted RBP13.51□□□□□ -0.25
COL2A1-201ENST00000337299 PSMD11O00231 422 aa13.51□□□□□ -0.25
COL2A1-201ENST00000337299 TCEA3O75764 348 aa13.51□□□□□ -0.25
COL2A1-201ENST00000337299 FDX1P10109 184 aa13.51□□□□□ -0.25
COL2A1-201ENST00000337299 THOP1P52888 689 aa13.51□□□□□ -0.25
COL2A1-201ENST00000337299 MRPL28Q13084 256 aaKnown RBP13.51□□□□□ -0.25
COL2A1-201ENST00000337299 TLR1Q15399 786 aa13.51□□□□□ -0.25
COL2A1-201ENST00000337299 RBBP7Q16576 425 aa13.51□□□□□ -0.25
COL2A1-201ENST00000337299 FRMD7Q6ZUT3 714 aa13.51□□□□□ -0.25
COL2A1-201ENST00000337299 ANKS1BQ7Z6G8 1248 aa13.51□□□□□ -0.25
COL2A1-201ENST00000337299 SFRP1Q8N474 314 aa13.51□□□□□ -0.25
COL2A1-201ENST00000337299 UBASH3BQ8TF42 649 aa13.51□□□□□ -0.25
COL2A1-201ENST00000337299 OTUD5Q96G74 571 aa13.51□□□□□ -0.25
COL2A1-201ENST00000337299 YIPF2Q9BWQ6 316 aa13.51□□□□□ -0.25
COL2A1-201ENST00000337299 MARCH7Q9H992 704 aa13.51□□□□□ -0.25
COL2A1-201ENST00000337299 CAB39LQ9H9S4 337 aa13.51□□□□□ -0.25
COL2A1-201ENST00000337299 DDX4Q9NQI0 724 aaKnown RBP13.51□□□□□ -0.25
COL2A1-201ENST00000337299 WDR70Q9NW82 654 aa13.51□□□□□ -0.25
COL2A1-201ENST00000337299 PNMA8BQ9ULN7 279 aaPredicted RBP13.51□□□□□ -0.25
COL2A1-201ENST00000337299 SLC8A2Q9UPR5 921 aa13.51□□□□□ -0.25
COL2A1-201ENST00000337299 SNX9Q9Y5X1 595 aa13.51□□□□□ -0.25
COL2A1-201ENST00000337299 ATRNO75882 1429 aa13.51□□□□□ -0.25
COL2A1-201ENST00000337299 HDAC3O15379 428 aa13.5□□□□□ -0.25
COL2A1-201ENST00000337299 KCNH1O95259 989 aa13.5□□□□□ -0.25
COL2A1-201ENST00000337299 CCDC153Q494R4 210 aa13.5□□□□□ -0.25
COL2A1-201ENST00000337299 PITRM1Q5JRX3 1037 aa13.5□□□□□ -0.25
COL2A1-201ENST00000337299 ARMC4Q5T2S8 1044 aa13.5□□□□□ -0.25
COL2A1-201ENST00000337299 DEPDC1Q5TB30 811 aa13.5□□□□□ -0.25
COL2A1-201ENST00000337299 TMEM26Q6ZUK4 368 aa13.5□□□□□ -0.25
COL2A1-201ENST00000337299 SLC51AQ86UW1 340 aa13.5□□□□□ -0.25
COL2A1-201ENST00000337299 LPGAT1Q92604 370 aa13.5□□□□□ -0.25
COL2A1-201ENST00000337299 TXLNGYQ9BZA5 131 aa13.5□□□□□ -0.25
COL2A1-201ENST00000337299 MRPL42Q9Y6G3 142 aaKnown RBP13.5□□□□□ -0.25
COL2A1-201ENST00000337299 TMEM63AO94886 807 aa13.5□□□□□ -0.25
COL2A1-201ENST00000337299 FKBP9O95302 570 aa13.5□□□□□ -0.25
COL2A1-201ENST00000337299 ATP5BP06576 529 aaKnown RBP13.5□□□□□ -0.25
COL2A1-201ENST00000337299 PRKCEQ02156 737 aa13.5□□□□□ -0.25
COL2A1-201ENST00000337299 MAP3K10Q02779 954 aa13.5□□□□□ -0.25
COL2A1-201ENST00000337299 UGP2Q16851 508 aa13.5□□□□□ -0.25
COL2A1-201ENST00000337299 SLC9A4Q6AI14 798 aa13.5□□□□□ -0.25
COL2A1-201ENST00000337299 FOXR2Q6PJQ5 311 aa13.5□□□□□ -0.25
COL2A1-201ENST00000337299 FKBP9P1Q75LS8 142 aa13.5□□□□□ -0.25
COL2A1-201ENST00000337299 SCAIQ8N9R8 606 aa13.5□□□□□ -0.25
COL2A1-201ENST00000337299 APBA2Q99767 749 aa13.5□□□□□ -0.25
COL2A1-201ENST00000337299 PRPF19Q9UMS4 504 aaKnown RBP13.5□□□□□ -0.25
COL2A1-201ENST00000337299 GMEB1Q9Y692 573 aa13.5□□□□□ -0.25
COL2A1-201ENST00000337299 LOC100506127A0A0U1RQW1 187 aa13.5□□□□□ -0.25
COL2A1-201ENST00000337299 DLDP09622 509 aaKnown RBP13.5□□□□□ -0.25
COL2A1-201ENST00000337299 EIF4BP23588 611 aaKnown RBP13.5□□□□□ -0.25
COL2A1-201ENST00000337299 DSG3P32926 999 aa13.5□□□□□ -0.25
COL2A1-201ENST00000337299 NOMO3P69849 1222 aa13.5□□□□□ -0.25
COL2A1-201ENST00000337299 DGUOKQ16854 277 aa13.5□□□□□ -0.25
COL2A1-201ENST00000337299 SLCO6A1Q86UG4 719 aa13.5□□□□□ -0.25
COL2A1-201ENST00000337299 CHSY1Q86X52 802 aa13.5□□□□□ -0.25
COL2A1-201ENST00000337299 FNDC8Q8TC99 324 aa13.5□□□□□ -0.25
COL2A1-201ENST00000337299 PLEKHA8Q96JA3 519 aa13.5□□□□□ -0.25
COL2A1-201ENST00000337299 GOLGA4Q13439 2230 aaKnown RBP13.5□□□□□ -0.25
COL2A1-201ENST00000337299 ZNF536O15090 1300 aa13.5□□□□□ -0.25
COL2A1-201ENST00000337299 ANKRD12Q6UB98 2062 aa13.5□□□□□ -0.25
COL2A1-201ENST00000337299 TCRBV7S3A2A0A539 114 aa13.5□□□□□ -0.25
COL2A1-201ENST00000337299 TRIM64CA6NLI5 447 aa13.5□□□□□ -0.25
COL2A1-201ENST00000337299 C9JVG2 144 aa13.5□□□□□ -0.25
COL2A1-201ENST00000337299 TIMM44O43615 452 aa13.5□□□□□ -0.25
COL2A1-201ENST00000337299 ITM2AO43736 263 aa13.5□□□□□ -0.25
COL2A1-201ENST00000337299 PMPCBO75439 489 aa13.5□□□□□ -0.25
COL2A1-201ENST00000337299 HNRNPLP14866 589 aaKnown RBP eCLIP13.5□□□□□ -0.25
COL2A1-201ENST00000337299 GRIA4P48058 902 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms