RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 SYNCRIPO60506 623 aaKnown RBP17.68■□□□□ 0.42
SYNPO-201ENST00000307662 SERPINA6P08185 405 aa17.68■□□□□ 0.42
SYNPO-201ENST00000307662 BMP6P22004 513 aa17.68■□□□□ 0.42
SYNPO-201ENST00000307662 ARCQ7LC44 396 aa17.68■□□□□ 0.42
SYNPO-201ENST00000307662 ULK2Q8IYT8 1036 aa17.68■□□□□ 0.42
SYNPO-201ENST00000307662 OR56A4Q8NGH8 313 aa17.68■□□□□ 0.42
SYNPO-201ENST00000307662 NDNQ99608 321 aa17.68■□□□□ 0.42
SYNPO-201ENST00000307662 NUAK2Q9H093 628 aa17.68■□□□□ 0.42
SYNPO-201ENST00000307662 KLK14Q9P0G3 267 aa17.68■□□□□ 0.42
SYNPO-201ENST00000307662 SH3BP1Q9Y3L3 701 aa17.68■□□□□ 0.42
SYNPO-201ENST00000307662 ETS2P15036 469 aa17.68■□□□□ 0.42
SYNPO-201ENST00000307662 ANKS6Q68DC2 871 aa17.68■□□□□ 0.42
SYNPO-201ENST00000307662 ADGRA1Q86SQ6 560 aa17.68■□□□□ 0.42
SYNPO-201ENST00000307662 NWD1Q149M9 1564 aa17.68■□□□□ 0.42
SYNPO-201ENST00000307662 LCA5LO95447 670 aa17.67■□□□□ 0.42
SYNPO-201ENST00000307662 ADSSP30520 456 aa17.67■□□□□ 0.42
SYNPO-201ENST00000307662 GSSP48637 474 aa17.67■□□□□ 0.42
SYNPO-201ENST00000307662 DGCR6Q14129 220 aa17.67■□□□□ 0.42
SYNPO-201ENST00000307662 KHDRBS2Q5VWX1 349 aaKnown RBP17.67■□□□□ 0.42
SYNPO-201ENST00000307662 TTC23Q5W5X9 447 aa17.67■□□□□ 0.42
SYNPO-201ENST00000307662 ZDHHC17Q8IUH5 632 aa17.67■□□□□ 0.42
SYNPO-201ENST00000307662 STN1Q9H668 368 aaKnown RBP17.67■□□□□ 0.42
SYNPO-201ENST00000307662 AGO4Q9HCK5 861 aaKnown RBP17.67■□□□□ 0.42
SYNPO-201ENST00000307662 CYP1A2P05177 515 aa17.67■□□□□ 0.42
SYNPO-201ENST00000307662 EPB42P16452 691 aa17.67■□□□□ 0.42
SYNPO-201ENST00000307662 ZNF470Q6ECI4 717 aa17.67■□□□□ 0.42
SYNPO-201ENST00000307662 EPHX4Q8IUS5 362 aa17.67■□□□□ 0.42
SYNPO-201ENST00000307662 PRELID2Q8N945 189 aa17.67■□□□□ 0.42
SYNPO-201ENST00000307662 MBOAT7Q96N66 472 aa17.67■□□□□ 0.42
SYNPO-201ENST00000307662 APBA2Q99767 749 aa17.67■□□□□ 0.42
SYNPO-201ENST00000307662 PTPRHQ9HD43 1115 aa17.67■□□□□ 0.42
SYNPO-201ENST00000307662 DDX52Q9Y2R4 599 aaKnown RBP eCLIP17.67■□□□□ 0.42
SYNPO-201ENST00000307662 TRIM38O00635 465 aa17.67■□□□□ 0.42
SYNPO-201ENST00000307662 FAM86B2P0C5J1 330 aa17.67■□□□□ 0.42
SYNPO-201ENST00000307662 CHKAP35790 457 aa17.67■□□□□ 0.42
SYNPO-201ENST00000307662 BST1Q10588 318 aa17.67■□□□□ 0.42
SYNPO-201ENST00000307662 LACTB2Q53H82 288 aaPredicted RBP17.67■□□□□ 0.42
SYNPO-201ENST00000307662 ZNF554Q86TJ5 538 aa17.67■□□□□ 0.42
SYNPO-201ENST00000307662 ADHFE1Q8IWW8 467 aa17.67■□□□□ 0.42
SYNPO-201ENST00000307662 DPP10Q8N608 796 aa17.67■□□□□ 0.42
SYNPO-201ENST00000307662 DGCR14Q96DF8 476 aaKnown RBP17.67■□□□□ 0.42
SYNPO-201ENST00000307662 MYOZ2Q9NPC6 264 aa17.67■□□□□ 0.42
SYNPO-201ENST00000307662 ETNK2Q9NVF9 386 aa17.67■□□□□ 0.42
SYNPO-201ENST00000307662 RBM22Q9NW64 420 aaKnown RBP eCLIP17.67■□□□□ 0.42
SYNPO-201ENST00000307662 ABI2Q9NYB9 513 aaPredicted RBP17.67■□□□□ 0.42
SYNPO-201ENST00000307662 TAS2R14Q9NYV8 317 aa17.67■□□□□ 0.42
SYNPO-201ENST00000307662 GRIA3P42263 894 aa17.67■□□□□ 0.42
SYNPO-201ENST00000307662 PERM1Q5SV97 790 aa17.67■□□□□ 0.42
SYNPO-201ENST00000307662 SAMD3Q8N6K7 520 aa17.67■□□□□ 0.42
SYNPO-201ENST00000307662 AGBL3Q8NEM8 1001 aa17.67■□□□□ 0.42
SYNPO-201ENST00000307662 GMCL1Q96IK5 515 aa17.67■□□□□ 0.42
SYNPO-201ENST00000307662 OSBPL11Q9BXB4 747 aa17.67■□□□□ 0.42
SYNPO-201ENST00000307662 PHACTR1Q9C0D0 580 aa17.67■□□□□ 0.42
SYNPO-201ENST00000307662 POLR1BQ9H9Y6 1135 aa17.67■□□□□ 0.42
SYNPO-201ENST00000307662 ADPRHL2Q9NX46 363 aa17.67■□□□□ 0.42
SYNPO-201ENST00000307662 EHD3Q9NZN3 535 aa17.67■□□□□ 0.42
SYNPO-201ENST00000307662 POLLQ9UGP5 575 aa17.67■□□□□ 0.42
SYNPO-201ENST00000307662 MYL12BO14950 172 aa17.67■□□□□ 0.42
SYNPO-201ENST00000307662 LIASO43766 372 aa17.67■□□□□ 0.42
SYNPO-201ENST00000307662 HALP42357 657 aa17.67■□□□□ 0.42
SYNPO-201ENST00000307662 OXCT1P55809 520 aa17.67■□□□□ 0.42
SYNPO-201ENST00000307662 KLHL12Q53G59 568 aa17.67■□□□□ 0.42
SYNPO-201ENST00000307662 GLB1LQ6UWU2 654 aa17.67■□□□□ 0.42
SYNPO-201ENST00000307662 ILDR2Q71H61 639 aa17.67■□□□□ 0.42
SYNPO-201ENST00000307662 TSPAN16Q9UKR8 245 aa17.67■□□□□ 0.42
SYNPO-201ENST00000307662 CCNT2O60583 730 aaKnown RBP17.66■□□□□ 0.42
SYNPO-201ENST00000307662 RBL1P28749 1068 aa17.66■□□□□ 0.42
SYNPO-201ENST00000307662 MIPP30301 263 aa17.66■□□□□ 0.42
SYNPO-201ENST00000307662 UBAP2LQ14157 1087 aaKnown RBP17.66■□□□□ 0.42
SYNPO-201ENST00000307662 TMEM132CQ8N3T6 1108 aa17.66■□□□□ 0.42
SYNPO-201ENST00000307662 ALLCQ8N6M5 410 aa17.66■□□□□ 0.42
SYNPO-201ENST00000307662 GMCL1P1Q8NEA9 526 aa17.66■□□□□ 0.42
SYNPO-201ENST00000307662 ZDHHC15Q96MV8 337 aa17.66■□□□□ 0.42
SYNPO-201ENST00000307662 FBXO28Q9NVF7 368 aa17.66■□□□□ 0.42
SYNPO-201ENST00000307662 BARX2Q9UMQ3 279 aaPredicted RBP17.66■□□□□ 0.42
SYNPO-201ENST00000307662 AP4B1Q9Y6B7 739 aa17.66■□□□□ 0.42
SYNPO-201ENST00000307662 A0A0B4J269 797 aa17.66■□□□□ 0.42
SYNPO-201ENST00000307662 RGSL1A5PLK6 1076 aa17.66■□□□□ 0.42
SYNPO-201ENST00000307662 VAPBO95292 243 aa17.66■□□□□ 0.42
SYNPO-201ENST00000307662 SLC12A3P55017 1021 aa17.66■□□□□ 0.42
SYNPO-201ENST00000307662 PSME3P61289 254 aa17.66■□□□□ 0.42
SYNPO-201ENST00000307662 CDH18Q13634 790 aa17.66■□□□□ 0.42
SYNPO-201ENST00000307662 ANGEL2Q5VTE6 544 aaKnown RBP17.66■□□□□ 0.42
SYNPO-201ENST00000307662 TPD52L3Q96J77 140 aa17.66■□□□□ 0.42
SYNPO-201ENST00000307662 UBXN6Q9BZV1 441 aa17.66■□□□□ 0.42
SYNPO-201ENST00000307662 AP3M1Q9Y2T2 418 aa17.66■□□□□ 0.42
SYNPO-201ENST00000307662 ARIH1Q9Y4X5 557 aaPredicted RBP17.66■□□□□ 0.42
SYNPO-201ENST00000307662 FRMPD4Q14CM0 1322 aa17.66■□□□□ 0.42
SYNPO-201ENST00000307662 CYB561D2O14569 222 aa17.66■□□□□ 0.42
SYNPO-201ENST00000307662 SNAP91O60641 907 aa17.66■□□□□ 0.42
SYNPO-201ENST00000307662 TNFRSF21O75509 655 aa17.66■□□□□ 0.42
SYNPO-201ENST00000307662 SEC24AO95486 1093 aa17.66■□□□□ 0.42
SYNPO-201ENST00000307662 MYCP01106 439 aaPredicted RBP17.66■□□□□ 0.42
SYNPO-201ENST00000307662 CYP1A1P04798 512 aaPredicted RBP17.66■□□□□ 0.42
SYNPO-201ENST00000307662 AMPD1P23109 780 aa17.66■□□□□ 0.42
SYNPO-201ENST00000307662 KDELR1P24390 212 aa17.66■□□□□ 0.42
SYNPO-201ENST00000307662 SQLEQ14534 574 aa17.66■□□□□ 0.42
SYNPO-201ENST00000307662 NUDT18Q6ZVK8 323 aa17.66■□□□□ 0.42
SYNPO-201ENST00000307662 ZNF467Q7Z7K2 595 aaPredicted RBP17.66■□□□□ 0.42
SYNPO-201ENST00000307662 IQCKQ8N0W5 287 aa17.66■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms