RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 CALB1P05937 261 aa13.8□□□□□ -0.2
SKA3-201ENST00000298260 MYCLP12524 364 aaPredicted RBP13.8□□□□□ -0.2
SKA3-201ENST00000298260 CDH3P22223 829 aa13.8□□□□□ -0.2
SKA3-201ENST00000298260 PRDX6P30041 224 aa13.8□□□□□ -0.2
SKA3-201ENST00000298260 OLIG2Q13516 323 aa13.8□□□□□ -0.2
SKA3-201ENST00000298260 LSM12Q3MHD2 195 aaKnown RBP13.8□□□□□ -0.2
SKA3-201ENST00000298260 EPGNQ6UW88 154 aa13.8□□□□□ -0.2
SKA3-201ENST00000298260 COG8Q96MW5 612 aa13.8□□□□□ -0.2
SKA3-201ENST00000298260 SOX17Q9H6I2 414 aaPredicted RBP13.8□□□□□ -0.2
SKA3-201ENST00000298260 PNPLA8Q9NP80 782 aa13.8□□□□□ -0.2
SKA3-201ENST00000298260 TMEM98Q9Y2Y6 226 aa13.8□□□□□ -0.2
SKA3-201ENST00000298260 FAM159BA6NKW6 160 aa13.79□□□□□ -0.2
SKA3-201ENST00000298260 SOCS2O14508 198 aa13.79□□□□□ -0.2
SKA3-201ENST00000298260 TIPRLO75663 272 aa13.79□□□□□ -0.2
SKA3-201ENST00000298260 HMGCRP04035 888 aa13.79□□□□□ -0.2
SKA3-201ENST00000298260 CCDC130P13994 396 aa13.79□□□□□ -0.2
SKA3-201ENST00000298260 NR4A1P22736 598 aa13.79□□□□□ -0.2
SKA3-201ENST00000298260 ME2P23368 584 aa13.79□□□□□ -0.2
SKA3-201ENST00000298260 PAX3P23760 479 aa13.79□□□□□ -0.2
SKA3-201ENST00000298260 RAP1GAPP47736 663 aa13.79□□□□□ -0.2
SKA3-201ENST00000298260 SESN2P58004 480 aaPredicted RBP13.79□□□□□ -0.2
SKA3-201ENST00000298260 IRF9Q00978 393 aa13.79□□□□□ -0.2
SKA3-201ENST00000298260 CDK18Q07002 472 aa13.79□□□□□ -0.2
SKA3-201ENST00000298260 PITRM1Q5JRX3 1037 aa13.79□□□□□ -0.2
SKA3-201ENST00000298260 KCTD17Q8N5Z5 321 aa13.79□□□□□ -0.2
SKA3-201ENST00000298260 NAT16Q8N8M0 369 aa13.79□□□□□ -0.2
SKA3-201ENST00000298260 CEP170P1Q96L14 293 aa13.79□□□□□ -0.2
SKA3-201ENST00000298260 APBA2Q99767 749 aa13.79□□□□□ -0.2
SKA3-201ENST00000298260 DHX35Q9H5Z1 703 aaKnown RBP13.79□□□□□ -0.2
SKA3-201ENST00000298260 RPF2Q9H7B2 306 aaKnown RBP13.79□□□□□ -0.2
SKA3-201ENST00000298260 ZFYVE28Q9HCC9 887 aa13.79□□□□□ -0.2
SKA3-201ENST00000298260 BPTFQ12830 3046 aa13.79□□□□□ -0.2
SKA3-201ENST00000298260 PALM2-AKAP2B1ALY0 433 aaPredicted RBP13.79□□□□□ -0.2
SKA3-201ENST00000298260 TPST1O60507 370 aa13.79□□□□□ -0.2
SKA3-201ENST00000298260 SPAG6O75602 509 aa13.79□□□□□ -0.2
SKA3-201ENST00000298260 IDO1P14902 403 aa13.79□□□□□ -0.2
SKA3-201ENST00000298260 BAG6P46379 1132 aa13.79□□□□□ -0.2
SKA3-201ENST00000298260 TRAF2Q12933 501 aa13.79□□□□□ -0.2
SKA3-201ENST00000298260 NR1D2Q14995 579 aa13.79□□□□□ -0.2
SKA3-201ENST00000298260 DCLRE1AQ6PJP8 1040 aa13.79□□□□□ -0.2
SKA3-201ENST00000298260 LAYNQ6UX15 382 aa13.79□□□□□ -0.2
SKA3-201ENST00000298260 ARMCX6Q7L4S7 300 aa13.79□□□□□ -0.2
SKA3-201ENST00000298260 USP37Q86T82 979 aa13.79□□□□□ -0.2
SKA3-201ENST00000298260 OFCC1Q8IZS5 231 aa13.79□□□□□ -0.2
SKA3-201ENST00000298260 TDRD5Q8NAT2 981 aaKnown RBP13.79□□□□□ -0.2
SKA3-201ENST00000298260 TMEM35BQ8NCS4 154 aa13.79□□□□□ -0.2
SKA3-201ENST00000298260 PIWIL1Q96J94 861 aaKnown RBP13.79□□□□□ -0.2
SKA3-201ENST00000298260 CPXM1Q96SM3 734 aa13.79□□□□□ -0.2
SKA3-201ENST00000298260 SERPINI1Q99574 410 aa13.79□□□□□ -0.2
SKA3-201ENST00000298260 FERMT1Q9BQL6 677 aa13.79□□□□□ -0.2
SKA3-201ENST00000298260 CXorf21Q9HAI6 301 aa13.79□□□□□ -0.2
SKA3-201ENST00000298260 FAM198AQ9UFP1 575 aa13.79□□□□□ -0.2
SKA3-201ENST00000298260 USP18Q9UMW8 372 aa13.79□□□□□ -0.2
SKA3-201ENST00000298260 FADS3Q9Y5Q0 445 aa13.79□□□□□ -0.2
SKA3-201ENST00000298260 A6NL46 340 aa13.78□□□□□ -0.2
SKA3-201ENST00000298260 ACOT8O14734 319 aa13.78□□□□□ -0.2
SKA3-201ENST00000298260 CHADO15335 359 aa13.78□□□□□ -0.2
SKA3-201ENST00000298260 FAM189A1O60320 539 aa13.78□□□□□ -0.2
SKA3-201ENST00000298260 CAPN15O75808 1086 aa13.78□□□□□ -0.2
SKA3-201ENST00000298260 ERVK-10P10266 1014 aa13.78□□□□□ -0.2
SKA3-201ENST00000298260 TSHRP16473 764 aa13.78□□□□□ -0.2
SKA3-201ENST00000298260 TYK2P29597 1187 aa13.78□□□□□ -0.2
SKA3-201ENST00000298260 HMOX2P30519 316 aa13.78□□□□□ -0.2
SKA3-201ENST00000298260 SOX11P35716 441 aa13.78□□□□□ -0.2
SKA3-201ENST00000298260 MYL6P60660 151 aa13.78□□□□□ -0.2
SKA3-201ENST00000298260 MRPS9P82933 396 aaKnown RBP13.78□□□□□ -0.2
SKA3-201ENST00000298260 ART3Q13508 389 aa13.78□□□□□ -0.2
SKA3-201ENST00000298260 NEDD8Q15843 81 aa13.78□□□□□ -0.2
SKA3-201ENST00000298260 HMBOX1Q6NT76 420 aa13.78□□□□□ -0.2
SKA3-201ENST00000298260 SCYL2Q6P3W7 929 aa13.78□□□□□ -0.2
SKA3-201ENST00000298260 ALDH16A1Q8IZ83 802 aa13.78□□□□□ -0.2
SKA3-201ENST00000298260 GMCL1Q96IK5 515 aa13.78□□□□□ -0.2
SKA3-201ENST00000298260 IMPG2Q9BZV3 1241 aa13.78□□□□□ -0.2
SKA3-201ENST00000298260 CDH19Q9H159 772 aa13.78□□□□□ -0.2
SKA3-201ENST00000298260 ST6GALNAC4Q9H4F1 302 aa13.78□□□□□ -0.2
SKA3-201ENST00000298260 TCEAL9Q9UHQ7 104 aa13.78□□□□□ -0.2
SKA3-201ENST00000298260 AP4S1Q9Y587 144 aa13.78□□□□□ -0.2
SKA3-201ENST00000298260 C1orf232A0A0U1RR37 186 aa13.78□□□□□ -0.2
SKA3-201ENST00000298260 TMEM233B4DJY2 109 aa13.78□□□□□ -0.2
SKA3-201ENST00000298260 HTRA2O43464 458 aaPredicted RBP13.78□□□□□ -0.2
SKA3-201ENST00000298260 VAPBO95292 243 aa13.78□□□□□ -0.2
SKA3-201ENST00000298260 KRT7P08729 469 aa13.78□□□□□ -0.2
SKA3-201ENST00000298260 CPA3P15088 417 aa13.78□□□□□ -0.2
SKA3-201ENST00000298260 ATP2B4P23634 1241 aa13.78□□□□□ -0.2
SKA3-201ENST00000298260 ACAT1P24752 427 aaKnown RBP13.78□□□□□ -0.2
SKA3-201ENST00000298260 CLCN2P51788 898 aa13.78□□□□□ -0.2
SKA3-201ENST00000298260 MLLT10P55197 1068 aa13.78□□□□□ -0.2
SKA3-201ENST00000298260 RPS6P62753 249 aaKnown RBP13.78□□□□□ -0.2
SKA3-201ENST00000298260 TXNL4AP83876 142 aaKnown RBP13.78□□□□□ -0.2
SKA3-201ENST00000298260 NOMO1Q15155 1222 aa13.78□□□□□ -0.2
SKA3-201ENST00000298260 ADRM1Q16186 407 aa13.78□□□□□ -0.2
SKA3-201ENST00000298260 HADHQ16836 314 aaKnown RBP13.78□□□□□ -0.2
SKA3-201ENST00000298260 FSCBQ5H9T9 825 aa13.78□□□□□ -0.2
SKA3-201ENST00000298260 ZC3H7AQ8IWR0 971 aaKnown RBP13.78□□□□□ -0.2
SKA3-201ENST00000298260 CPXCR1Q8N123 301 aa13.78□□□□□ -0.2
SKA3-201ENST00000298260 GABPB2Q8TAK5 448 aaPredicted RBP13.78□□□□□ -0.2
SKA3-201ENST00000298260 TRAF3IP1Q8TDR0 691 aaPredicted RBP13.78□□□□□ -0.2
SKA3-201ENST00000298260 TMEM174Q8WUU8 243 aa13.78□□□□□ -0.2
SKA3-201ENST00000298260 CASP10Q92851 521 aa13.78□□□□□ -0.2
SKA3-201ENST00000298260 RIT2Q99578 217 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms