RNA–Protein interactions for RNA: ENST00000292478.8

PTCD1-201, Transcript of pentatricopeptide repeat domain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTCD1, Length 5,582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD1-201ENST00000292478 GPC1P35052 558 aa13.04□□□□□ -0.32
PTCD1-201ENST00000292478 PBX1P40424 430 aa13.04□□□□□ -0.32
PTCD1-201ENST00000292478 MMP13P45452 471 aa13.04□□□□□ -0.32
PTCD1-201ENST00000292478 TRIM60Q495X7 471 aa13.04□□□□□ -0.32
PTCD1-201ENST00000292478 IZUMO2Q6UXV1 221 aa13.04□□□□□ -0.32
PTCD1-201ENST00000292478 RSPH1Q8WYR4 309 aa13.04□□□□□ -0.32
PTCD1-201ENST00000292478 REPS1Q96D71 796 aa13.04□□□□□ -0.32
PTCD1-201ENST00000292478 MORF4L1Q9UBU8 362 aa13.04□□□□□ -0.32
PTCD1-201ENST00000292478 PLA2G4CQ9UP65 541 aa13.04□□□□□ -0.32
PTCD1-201ENST00000292478 FSCN2O14926 492 aa13.04□□□□□ -0.32
PTCD1-201ENST00000292478 PSEN1P49768 467 aa13.04□□□□□ -0.32
PTCD1-201ENST00000292478 SERPINH1P50454 418 aaKnown RBP13.04□□□□□ -0.32
PTCD1-201ENST00000292478 MRPS15P82914 257 aaKnown RBP13.04□□□□□ -0.32
PTCD1-201ENST00000292478 FASTKQ14296 549 aaKnown RBP13.04□□□□□ -0.32
PTCD1-201ENST00000292478 PREPLQ4J6C6 727 aaPredicted RBP13.04□□□□□ -0.32
PTCD1-201ENST00000292478 IYDQ6PHW0 289 aa13.04□□□□□ -0.32
PTCD1-201ENST00000292478 BBS12Q6ZW61 710 aa13.04□□□□□ -0.32
PTCD1-201ENST00000292478 GLIS3Q8NEA6 775 aa13.04□□□□□ -0.32
PTCD1-201ENST00000292478 RNF157Q96PX1 679 aa13.04□□□□□ -0.32
PTCD1-201ENST00000292478 BDH2Q9BUT1 245 aa13.04□□□□□ -0.32
PTCD1-201ENST00000292478 PARVBQ9HBI1 364 aa13.04□□□□□ -0.32
PTCD1-201ENST00000292478 TISP43B9A030 160 aa13.04□□□□□ -0.32
PTCD1-201ENST00000292478 GUCA1CO95843 209 aa13.04□□□□□ -0.32
PTCD1-201ENST00000292478 GRIK5Q16478 980 aa13.04□□□□□ -0.32
PTCD1-201ENST00000292478 TBCELQ5QJ74 424 aa13.04□□□□□ -0.32
PTCD1-201ENST00000292478 DUPD1Q68J44 220 aa13.04□□□□□ -0.32
PTCD1-201ENST00000292478 MIER2Q8N344 545 aa13.04□□□□□ -0.32
PTCD1-201ENST00000292478 ANKRD52Q8NB46 1076 aa13.04□□□□□ -0.32
PTCD1-201ENST00000292478 KAT5Q92993 513 aa13.04□□□□□ -0.32
PTCD1-201ENST00000292478 CATSPER2Q96P56 530 aa13.04□□□□□ -0.32
PTCD1-201ENST00000292478 TINF2Q9BSI4 451 aa13.04□□□□□ -0.32
PTCD1-201ENST00000292478 ENOPH1Q9UHY7 261 aa13.04□□□□□ -0.32
PTCD1-201ENST00000292478 TNPO3Q9Y5L0 923 aaKnown RBP13.04□□□□□ -0.32
PTCD1-201ENST00000292478 RANBP1P43487 201 aa13.04□□□□□ -0.32
PTCD1-201ENST00000292478 AIF1P55008 147 aa13.04□□□□□ -0.32
PTCD1-201ENST00000292478 GLT6D1Q7Z4J2 308 aa13.04□□□□□ -0.32
PTCD1-201ENST00000292478 IRF2BP2Q7Z5L9 587 aa13.04□□□□□ -0.32
PTCD1-201ENST00000292478 DHFR2Q86XF0 187 aa13.04□□□□□ -0.32
PTCD1-201ENST00000292478 BHMTQ93088 406 aa13.04□□□□□ -0.32
PTCD1-201ENST00000292478 HIC2Q96JB3 615 aa13.04□□□□□ -0.32
PTCD1-201ENST00000292478 C10orf88Q9H8K7 445 aa13.04□□□□□ -0.32
PTCD1-201ENST00000292478 SHPRHQ149N8 1683 aa13.04□□□□□ -0.32
PTCD1-201ENST00000292478 MRC1P22897 1456 aa13.03□□□□□ -0.32
PTCD1-201ENST00000292478 PDE2AO00408 941 aaPredicted RBP13.03□□□□□ -0.32
PTCD1-201ENST00000292478 MYL4P12829 197 aa13.03□□□□□ -0.32
PTCD1-201ENST00000292478 SLC2A4P14672 509 aa13.03□□□□□ -0.32
PTCD1-201ENST00000292478 PSMA3P25788 255 aa13.03□□□□□ -0.32
PTCD1-201ENST00000292478 NOMO3P69849 1222 aa13.03□□□□□ -0.32
PTCD1-201ENST00000292478 CAPSQ13938 189 aa13.03□□□□□ -0.32
PTCD1-201ENST00000292478 RNF43Q68DV7 783 aa13.03□□□□□ -0.32
PTCD1-201ENST00000292478 DLG3Q92796 817 aa13.03□□□□□ -0.32
PTCD1-201ENST00000292478 NSMCE2Q96MF7 247 aa13.03□□□□□ -0.32
PTCD1-201ENST00000292478 ACOX2Q99424 681 aa13.03□□□□□ -0.32
PTCD1-201ENST00000292478 APBA2Q99767 749 aa13.03□□□□□ -0.32
PTCD1-201ENST00000292478 MYLK2Q9H1R3 596 aa13.03□□□□□ -0.32
PTCD1-201ENST00000292478 RAD18Q9NS91 495 aa13.03□□□□□ -0.32
PTCD1-201ENST00000292478 CLUHO75153 1309 aa13.03□□□□□ -0.32
PTCD1-201ENST00000292478 ADM5C9JUS6 153 aa13.03□□□□□ -0.32
PTCD1-201ENST00000292478 KATNA1O75449 491 aa13.03□□□□□ -0.32
PTCD1-201ENST00000292478 SNHG28P0DPA3 235 aa13.03□□□□□ -0.32
PTCD1-201ENST00000292478 ME2P23368 584 aa13.03□□□□□ -0.32
PTCD1-201ENST00000292478 SERPINB1P30740 379 aa13.03□□□□□ -0.32
PTCD1-201ENST00000292478 CCT8P50990 548 aa13.03□□□□□ -0.32
PTCD1-201ENST00000292478 CDC16Q13042 620 aa13.03□□□□□ -0.32
PTCD1-201ENST00000292478 TTMPQ5BVD1 217 aa13.03□□□□□ -0.32
PTCD1-201ENST00000292478 SAMD4BQ5PRF9 694 aaKnown RBP13.03□□□□□ -0.32
PTCD1-201ENST00000292478 FAM183BPQ6ZVS7 135 aa13.03□□□□□ -0.32
PTCD1-201ENST00000292478 LGI2Q8N0V4 545 aa13.03□□□□□ -0.32
PTCD1-201ENST00000292478 CDT1Q9H211 546 aa13.03□□□□□ -0.32
PTCD1-201ENST00000292478 COL1A2P08123 1366 aa13.03□□□□□ -0.32
PTCD1-201ENST00000292478 GNG14A0A1W2PPG7 69 aa13.03□□□□□ -0.32
PTCD1-201ENST00000292478 ENO4A6NNW6 628 aa13.03□□□□□ -0.32
PTCD1-201ENST00000292478 FAM58BPP0C7Q3 252 aa13.03□□□□□ -0.32
PTCD1-201ENST00000292478 PTPN3P26045 913 aa13.03□□□□□ -0.32
PTCD1-201ENST00000292478 RPL9P32969 192 aaKnown RBP13.03□□□□□ -0.32
PTCD1-201ENST00000292478 SOX6P35712 828 aa13.03□□□□□ -0.32
PTCD1-201ENST00000292478 RPL14P50914 215 aaKnown RBP13.03□□□□□ -0.32
PTCD1-201ENST00000292478 CRY2Q49AN0 593 aa13.03□□□□□ -0.32
PTCD1-201ENST00000292478 LRRC52Q8N7C0 313 aa13.03□□□□□ -0.32
PTCD1-201ENST00000292478 MID1IP1Q9NPA3 183 aa13.03□□□□□ -0.32
PTCD1-201ENST00000292478 IFRD1O00458 451 aaPredicted RBP13.03□□□□□ -0.32
PTCD1-201ENST00000292478 CLPTM1O96005 669 aa13.03□□□□□ -0.32
PTCD1-201ENST00000292478 USP17L7P0C7H9 530 aa13.03□□□□□ -0.32
PTCD1-201ENST00000292478 POLR2LP62875 67 aaKnown RBP13.03□□□□□ -0.32
PTCD1-201ENST00000292478 ITGB3BPQ13352 177 aaPredicted RBP13.03□□□□□ -0.32
PTCD1-201ENST00000292478 AUHQ13825 339 aaKnown RBP13.03□□□□□ -0.32
PTCD1-201ENST00000292478 ARCQ7LC44 396 aa13.03□□□□□ -0.32
PTCD1-201ENST00000292478 TFAP2DQ7Z6R9 452 aa13.03□□□□□ -0.32
PTCD1-201ENST00000292478 MCOLN3Q8TDD5 553 aa13.03□□□□□ -0.32
PTCD1-201ENST00000292478 MRPL48Q96GC5 212 aaKnown RBP13.03□□□□□ -0.32
PTCD1-201ENST00000292478 UGT2B28Q9BY64 529 aa13.03□□□□□ -0.32
PTCD1-201ENST00000292478 PTCH2Q9Y6C5 1203 aa13.03□□□□□ -0.32
PTCD1-201ENST00000292478 KCNK1O00180 336 aa13.02□□□□□ -0.32
PTCD1-201ENST00000292478 ZNF862O60290 1169 aa13.02□□□□□ -0.32
PTCD1-201ENST00000292478 CCNT2O60583 730 aaKnown RBP13.02□□□□□ -0.32
PTCD1-201ENST00000292478 BAIAP3O94812 1187 aa13.02□□□□□ -0.32
PTCD1-201ENST00000292478 NME5P56597 212 aa13.02□□□□□ -0.32
PTCD1-201ENST00000292478 PURAQ00577 322 aaKnown RBP13.02□□□□□ -0.32
PTCD1-201ENST00000292478 PABPC1LQ4VXU2 614 aaKnown RBP13.02□□□□□ -0.32
PTCD1-201ENST00000292478 SLC39A12Q504Y0 691 aa13.02□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms