RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 NUF2Q9BZD4 464 aa12.95□□□□□ -0.34
LIG1-201ENST00000263274 IARS2Q9NSE4 1012 aaKnown RBP12.95□□□□□ -0.34
LIG1-201ENST00000263274 SETD4Q9NVD3 440 aa12.95□□□□□ -0.34
LIG1-201ENST00000263274 CDH22Q9UJ99 828 aa12.95□□□□□ -0.34
LIG1-201ENST00000263274 TLK1Q9UKI8 766 aa12.95□□□□□ -0.34
LIG1-201ENST00000263274 EMCNQ9ULC0 261 aa12.95□□□□□ -0.34
LIG1-201ENST00000263274 IGKV6-21A0A0C4DH24 114 aa12.95□□□□□ -0.34
LIG1-201ENST00000263274 CAPN8A6NHC0 703 aa12.95□□□□□ -0.34
LIG1-201ENST00000263274 EEF2KO00418 725 aaKnown RBP12.95□□□□□ -0.34
LIG1-201ENST00000263274 ADCY6O43306 1168 aa12.95□□□□□ -0.34
LIG1-201ENST00000263274 SLC9B1Q4ZJI4 515 aa12.95□□□□□ -0.34
LIG1-201ENST00000263274 RNF135Q8IUD6 432 aa12.95□□□□□ -0.34
LIG1-201ENST00000263274 ICA1LQ8NDH6 482 aa12.95□□□□□ -0.34
LIG1-201ENST00000263274 SLC7A14Q8TBB6 771 aa12.95□□□□□ -0.34
LIG1-201ENST00000263274 SLC35F5Q8WV83 523 aa12.95□□□□□ -0.34
LIG1-201ENST00000263274 KHSRPQ92945 711 aaKnown RBP eCLIP12.95□□□□□ -0.34
LIG1-201ENST00000263274 TMA16Q96EY4 203 aaKnown RBP12.95□□□□□ -0.34
LIG1-201ENST00000263274 CERS2Q96G23 380 aa12.95□□□□□ -0.34
LIG1-201ENST00000263274 CENPKQ9BS16 269 aa12.95□□□□□ -0.34
LIG1-201ENST00000263274 EIF2AQ9BY44 585 aaKnown RBP12.95□□□□□ -0.34
LIG1-201ENST00000263274 KLHL4Q9C0H6 718 aa12.95□□□□□ -0.34
LIG1-201ENST00000263274 SNNO75324 88 aaPredicted RBP12.95□□□□□ -0.34
LIG1-201ENST00000263274 GABBR2O75899 941 aa12.95□□□□□ -0.34
LIG1-201ENST00000263274 FDFT1P37268 417 aa12.95□□□□□ -0.34
LIG1-201ENST00000263274 GP5P40197 560 aa12.95□□□□□ -0.34
LIG1-201ENST00000263274 CCNFP41002 786 aa12.95□□□□□ -0.34
LIG1-201ENST00000263274 ADCYAP1R1P41586 468 aa12.95□□□□□ -0.34
LIG1-201ENST00000263274 MRPS22P82650 360 aaKnown RBP12.95□□□□□ -0.34
LIG1-201ENST00000263274 DEUP1Q05D60 604 aa12.95□□□□□ -0.34
LIG1-201ENST00000263274 CERCAMQ5T4B2 595 aa12.95□□□□□ -0.34
LIG1-201ENST00000263274 FOXB2Q5VYV0 432 aa12.95□□□□□ -0.34
LIG1-201ENST00000263274 SNX32Q86XE0 403 aa12.95□□□□□ -0.34
LIG1-201ENST00000263274 TDRD5Q8NAT2 981 aaKnown RBP12.95□□□□□ -0.34
LIG1-201ENST00000263274 RNF139Q8WU17 664 aa12.95□□□□□ -0.34
LIG1-201ENST00000263274 LENG8Q96PV6 779 aaPredicted RBP12.95□□□□□ -0.34
LIG1-201ENST00000263274 SGIP1Q9BQI5 828 aa12.95□□□□□ -0.34
LIG1-201ENST00000263274 CLIC5Q9NZA1 410 aa12.95□□□□□ -0.34
LIG1-201ENST00000263274 CACNG4Q9UBN1 327 aa12.95□□□□□ -0.34
LIG1-201ENST00000263274 ADAMTS6Q9UKP5 1117 aa12.95□□□□□ -0.34
LIG1-201ENST00000263274 ARHGAP26Q9UNA1 814 aa12.95□□□□□ -0.34
LIG1-201ENST00000263274 POMPQ9Y244 141 aa12.95□□□□□ -0.34
LIG1-201ENST00000263274 SSX2IPQ9Y2D8 614 aa12.95□□□□□ -0.34
LIG1-201ENST00000263274 COL11A1P12107 1806 aaPredicted RBP12.94□□□□□ -0.34
LIG1-201ENST00000263274 MDM4O15151 490 aa12.94□□□□□ -0.34
LIG1-201ENST00000263274 CHRNGP07510 517 aa12.94□□□□□ -0.34
LIG1-201ENST00000263274 PGAM1P18669 254 aa12.94□□□□□ -0.34
LIG1-201ENST00000263274 TPSB2P20231 275 aa12.94□□□□□ -0.34
LIG1-201ENST00000263274 SPRP35270 261 aaPredicted RBP12.94□□□□□ -0.34
LIG1-201ENST00000263274 BTKQ06187 659 aa12.94□□□□□ -0.34
LIG1-201ENST00000263274 DLG1Q12959 904 aa12.94□□□□□ -0.34
LIG1-201ENST00000263274 TPSAB1Q15661 275 aa12.94□□□□□ -0.34
LIG1-201ENST00000263274 TBCCQ15814 346 aa12.94□□□□□ -0.34
LIG1-201ENST00000263274 FSCBQ5H9T9 825 aa12.94□□□□□ -0.34
LIG1-201ENST00000263274 IYDQ6PHW0 289 aa12.94□□□□□ -0.34
LIG1-201ENST00000263274 ZNF567Q8N184 647 aa12.94□□□□□ -0.34
LIG1-201ENST00000263274 GATA6Q92908 595 aa12.94□□□□□ -0.34
LIG1-201ENST00000263274 CELF6Q96J87 481 aaKnown RBP12.94□□□□□ -0.34
LIG1-201ENST00000263274 CATSPER2Q96P56 530 aa12.94□□□□□ -0.34
LIG1-201ENST00000263274 CDRT15Q96T59 188 aa12.94□□□□□ -0.34
LIG1-201ENST00000263274 SIK2Q9H0K1 926 aa12.94□□□□□ -0.34
LIG1-201ENST00000263274 WDR81Q562E7 1941 aa12.94□□□□□ -0.34
LIG1-201ENST00000263274 CITO14578 2027 aa12.94□□□□□ -0.34
LIG1-201ENST00000263274 H3BRB1 525 aa12.94□□□□□ -0.34
LIG1-201ENST00000263274 CYP2C8P10632 490 aa12.94□□□□□ -0.34
LIG1-201ENST00000263274 COX4I1P13073 169 aa12.94□□□□□ -0.34
LIG1-201ENST00000263274 YBX3P16989 372 aaKnown RBP eCLIP12.94□□□□□ -0.34
LIG1-201ENST00000263274 BST2Q10589 180 aaKnown RBP12.94□□□□□ -0.34
LIG1-201ENST00000263274 PPM1LQ5SGD2 360 aa12.94□□□□□ -0.34
LIG1-201ENST00000263274 ANKRD23Q86SG2 305 aa12.94□□□□□ -0.34
LIG1-201ENST00000263274 PIGZQ86VD9 579 aa12.94□□□□□ -0.34
LIG1-201ENST00000263274 SPNS2Q8IVW8 549 aa12.94□□□□□ -0.34
LIG1-201ENST00000263274 LRGUKQ96M69 825 aa12.94□□□□□ -0.34
LIG1-201ENST00000263274 QKIQ96PU8 341 aaKnown RBP eCLIP12.94□□□□□ -0.34
LIG1-201ENST00000263274 OR52B2Q96RD2 323 aa12.94□□□□□ -0.34
LIG1-201ENST00000263274 VPS33BQ9H267 617 aa12.94□□□□□ -0.34
LIG1-201ENST00000263274 VCX3BQ9H321 246 aa12.94□□□□□ -0.34
LIG1-201ENST00000263274 NXF3Q9H4D5 531 aaKnown RBP12.94□□□□□ -0.34
LIG1-201ENST00000263274 TUT1Q9H6E5 874 aaKnown RBP12.94□□□□□ -0.34
LIG1-201ENST00000263274 MOCS1Q9NZB8 636 aa12.94□□□□□ -0.34
LIG1-201ENST00000263274 RNF181Q9P0P0 153 aa12.94□□□□□ -0.34
LIG1-201ENST00000263274 TIMM13Q9Y5L4 95 aaPredicted RBP12.94□□□□□ -0.34
LIG1-201ENST00000263274 TSPAN1O60635 241 aa12.94□□□□□ -0.34
LIG1-201ENST00000263274 SETSIPP0DME0 302 aa12.94□□□□□ -0.34
LIG1-201ENST00000263274 GRK2P25098 689 aa12.94□□□□□ -0.34
LIG1-201ENST00000263274 MPSTP25325 297 aa12.94□□□□□ -0.34
LIG1-201ENST00000263274 NR2C2P49116 596 aa12.94□□□□□ -0.34
LIG1-201ENST00000263274 ART3Q13508 389 aa12.94□□□□□ -0.34
LIG1-201ENST00000263274 SEMA5AQ13591 1074 aa12.94□□□□□ -0.34
LIG1-201ENST00000263274 USP10Q14694 798 aaKnown RBP12.94□□□□□ -0.34
LIG1-201ENST00000263274 MTHFD1LQ6UB35 978 aa12.94□□□□□ -0.34
LIG1-201ENST00000263274 PTAR1Q7Z6K3 402 aaPredicted RBP12.94□□□□□ -0.34
LIG1-201ENST00000263274 TMEM110Q86TL2 294 aa12.94□□□□□ -0.34
LIG1-201ENST00000263274 SPATA24Q86W54 205 aa12.94□□□□□ -0.34
LIG1-201ENST00000263274 SLC4A5Q9BY07 1137 aa12.94□□□□□ -0.34
LIG1-201ENST00000263274 TCF7L2Q9NQB0 619 aa12.94□□□□□ -0.34
LIG1-201ENST00000263274 VANGL2Q9ULK5 521 aa12.94□□□□□ -0.34
LIG1-201ENST00000263274 PPME1Q9Y570 386 aa12.94□□□□□ -0.34
LIG1-201ENST00000263274 SNX10Q9Y5X0 201 aa12.94□□□□□ -0.34
LIG1-201ENST00000263274 HUS1O60921 280 aa12.93□□□□□ -0.34
LIG1-201ENST00000263274 CAPN15O75808 1086 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms