RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 C4orf22Q6V702 233 aa5.14□□□□□ -1.59
SCN1A-218ENST00000640036 ZC3H18Q86VM9 953 aaKnown RBP5.14□□□□□ -1.59
SCN1A-218ENST00000640036 GPR156Q8NFN8 814 aa5.14□□□□□ -1.59
SCN1A-218ENST00000640036 MYCBPAPQ8TBZ2 947 aa5.14□□□□□ -1.59
SCN1A-218ENST00000640036 TRIB2Q92519 343 aa5.14□□□□□ -1.59
SCN1A-218ENST00000640036 CCDC90BQ9GZT6 254 aa5.14□□□□□ -1.59
SCN1A-218ENST00000640036 AHDC1Q5TGY3 1603 aaPredicted RBP5.14□□□□□ -1.59
SCN1A-218ENST00000640036 A0A1W2PRU2 124 aa5.14□□□□□ -1.59
SCN1A-218ENST00000640036 RGS16O15492 202 aaPredicted RBP5.14□□□□□ -1.59
SCN1A-218ENST00000640036 IDSP22304 550 aa5.14□□□□□ -1.59
SCN1A-218ENST00000640036 PTENP60484 403 aa5.14□□□□□ -1.59
SCN1A-218ENST00000640036 EHHADHQ08426 723 aa5.14□□□□□ -1.59
SCN1A-218ENST00000640036 TDGQ13569 410 aa5.14□□□□□ -1.59
SCN1A-218ENST00000640036 CUL2Q13617 745 aa5.14□□□□□ -1.59
SCN1A-218ENST00000640036 CBWD3Q5JTY5 395 aa5.14□□□□□ -1.59
SCN1A-218ENST00000640036 CBWD5Q5RIA9 395 aa5.14□□□□□ -1.59
SCN1A-218ENST00000640036 OTOAQ7RTW8 1153 aa5.14□□□□□ -1.59
SCN1A-218ENST00000640036 ARL14Q8N4G2 192 aa5.14□□□□□ -1.59
SCN1A-218ENST00000640036 ZNF564Q8TBZ8 553 aaPredicted RBP5.14□□□□□ -1.59
SCN1A-218ENST00000640036 FAR1Q8WVX9 515 aa5.14□□□□□ -1.59
SCN1A-218ENST00000640036 MRPL46Q9H2W6 279 aaKnown RBP5.14□□□□□ -1.59
SCN1A-218ENST00000640036 FBXL12Q9NXK8 326 aa5.14□□□□□ -1.59
SCN1A-218ENST00000640036 VAV3Q9UKW4 847 aa5.14□□□□□ -1.59
SCN1A-218ENST00000640036 SCAMP3O14828 347 aaKnown RBP5.14□□□□□ -1.59
SCN1A-218ENST00000640036 TRIM16O95361 564 aa5.14□□□□□ -1.59
SCN1A-218ENST00000640036 MLNP12872 115 aa5.14□□□□□ -1.59
SCN1A-218ENST00000640036 ZNF7P17097 686 aaPredicted RBP5.14□□□□□ -1.59
SCN1A-218ENST00000640036 DRD1P21728 446 aa5.14□□□□□ -1.59
SCN1A-218ENST00000640036 JAK1P23458 1154 aa5.14□□□□□ -1.59
SCN1A-218ENST00000640036 MAT2AP31153 395 aaKnown RBP5.14□□□□□ -1.59
SCN1A-218ENST00000640036 HSPA9P38646 679 aaKnown RBP5.14□□□□□ -1.59
SCN1A-218ENST00000640036 RALGDSQ12967 914 aa5.14□□□□□ -1.59
SCN1A-218ENST00000640036 MRPL28Q13084 256 aaKnown RBP5.14□□□□□ -1.59
SCN1A-218ENST00000640036 ZNHIT3Q15649 155 aaPredicted RBP5.14□□□□□ -1.59
SCN1A-218ENST00000640036 ADCK5Q3MIX3 580 aa5.14□□□□□ -1.59
SCN1A-218ENST00000640036 LYSMD4Q5XG99 296 aa5.14□□□□□ -1.59
SCN1A-218ENST00000640036 CENPPQ6IPU0 288 aa5.14□□□□□ -1.59
SCN1A-218ENST00000640036 NT5DC3Q86UY8 548 aa5.14□□□□□ -1.59
SCN1A-218ENST00000640036 CAND1Q86VP6 1230 aaKnown RBP5.14□□□□□ -1.59
SCN1A-218ENST00000640036 RNF25Q96BH1 459 aaPredicted RBP5.14□□□□□ -1.59
SCN1A-218ENST00000640036 PAGE5Q96GU1 130 aa5.14□□□□□ -1.59
SCN1A-218ENST00000640036 KXD1Q9BQD3 176 aa5.14□□□□□ -1.59
SCN1A-218ENST00000640036 UBE2ZQ9H832 354 aaPredicted RBP5.14□□□□□ -1.59
SCN1A-218ENST00000640036 PAPOLBQ9NRJ5 636 aaKnown RBP5.14□□□□□ -1.59
SCN1A-218ENST00000640036 IFT172Q9UG01 1749 aa5.13□□□□□ -1.59
SCN1A-218ENST00000640036 F5H423 210 aaPredicted RBP5.13□□□□□ -1.59
SCN1A-218ENST00000640036 B4GALT4O60513 344 aa5.13□□□□□ -1.59
SCN1A-218ENST00000640036 CATP04040 527 aaKnown RBP5.13□□□□□ -1.59
SCN1A-218ENST00000640036 PSMC3P17980 439 aa5.13□□□□□ -1.59
SCN1A-218ENST00000640036 CTNNA1P35221 906 aaKnown RBP5.13□□□□□ -1.59
SCN1A-218ENST00000640036 RARRES1P49788 294 aa5.13□□□□□ -1.59
SCN1A-218ENST00000640036 HSDL1Q3SXM5 330 aa5.13□□□□□ -1.59
SCN1A-218ENST00000640036 KIAA0319Q5VV43 1072 aa5.13□□□□□ -1.59
SCN1A-218ENST00000640036 KRT80Q6KB66 452 aa5.13□□□□□ -1.59
SCN1A-218ENST00000640036 C16orf46Q6P387 395 aa5.13□□□□□ -1.59
SCN1A-218ENST00000640036 HEXDCQ8WVB3 486 aa5.13□□□□□ -1.59
SCN1A-218ENST00000640036 UPF3AQ9H1J1 476 aaKnown RBP5.13□□□□□ -1.59
SCN1A-218ENST00000640036 SIRPGQ9P1W8 387 aa5.13□□□□□ -1.59
SCN1A-218ENST00000640036 VANGL2Q9ULK5 521 aa5.13□□□□□ -1.59
SCN1A-218ENST00000640036 HES2Q9Y543 173 aa5.13□□□□□ -1.59
SCN1A-218ENST00000640036 PCDHAC2Q9Y5I4 1007 aa5.13□□□□□ -1.59
SCN1A-218ENST00000640036 EPN1Q9Y6I3 576 aaPredicted RBP5.13□□□□□ -1.59
SCN1A-218ENST00000640036 RGPD1P0DJD0 1748 aa5.13□□□□□ -1.59
SCN1A-218ENST00000640036 TK2O00142 265 aa5.13□□□□□ -1.59
SCN1A-218ENST00000640036 CYP26A1O43174 497 aa5.13□□□□□ -1.59
SCN1A-218ENST00000640036 ALPIP09923 528 aa5.13□□□□□ -1.59
SCN1A-218ENST00000640036 NDST1P52848 882 aa5.13□□□□□ -1.59
SCN1A-218ENST00000640036 YWHAZP63104 245 aaKnown RBP5.13□□□□□ -1.59
SCN1A-218ENST00000640036 RPL19P84098 196 aaKnown RBP5.13□□□□□ -1.59
SCN1A-218ENST00000640036 DDR2Q16832 855 aa5.13□□□□□ -1.59
SCN1A-218ENST00000640036 TFDP3Q5H9I0 405 aa5.13□□□□□ -1.59
SCN1A-218ENST00000640036 ALS2CLQ60I27 953 aa5.13□□□□□ -1.59
SCN1A-218ENST00000640036 IRGCQ6NXR0 463 aa5.13□□□□□ -1.59
SCN1A-218ENST00000640036 CCDC60Q8IWA6 550 aaPredicted RBP5.13□□□□□ -1.59
SCN1A-218ENST00000640036 SMYD4Q8IYR2 804 aaPredicted RBP5.13□□□□□ -1.59
SCN1A-218ENST00000640036 STAMBPL1Q96FJ0 436 aa5.13□□□□□ -1.59
SCN1A-218ENST00000640036 TASP1Q9H6P5 420 aa5.13□□□□□ -1.59
SCN1A-218ENST00000640036 NCKIPSDQ9NZQ3 722 aa5.13□□□□□ -1.59
SCN1A-218ENST00000640036 SQORQ9Y6N5 450 aa5.13□□□□□ -1.59
SCN1A-218ENST00000640036 F8VP50 259 aa5.13□□□□□ -1.59
SCN1A-218ENST00000640036 TM7SF2O76062 418 aa5.13□□□□□ -1.59
SCN1A-218ENST00000640036 ALDH18A1P54886 795 aaKnown RBP5.13□□□□□ -1.59
SCN1A-218ENST00000640036 COPS2P61201 443 aa5.13□□□□□ -1.59
SCN1A-218ENST00000640036 SPIRE1Q08AE8 756 aa5.13□□□□□ -1.59
SCN1A-218ENST00000640036 CDC16Q13042 620 aa5.13□□□□□ -1.59
SCN1A-218ENST00000640036 KBTBD6Q86V97 674 aa5.13□□□□□ -1.59
SCN1A-218ENST00000640036 UNC93AQ86WB7 457 aa5.13□□□□□ -1.59
SCN1A-218ENST00000640036 TREML1Q86YW5 311 aa5.13□□□□□ -1.59
SCN1A-218ENST00000640036 TEX19Q8NA77 164 aa5.13□□□□□ -1.59
SCN1A-218ENST00000640036 NPLOC4Q8TAT6 608 aa5.13□□□□□ -1.59
SCN1A-218ENST00000640036 FUBP3Q96I24 572 aaKnown RBP eCLIP5.13□□□□□ -1.59
SCN1A-218ENST00000640036 DPYSL5Q9BPU6 564 aa5.13□□□□□ -1.59
SCN1A-218ENST00000640036 TTLL2Q9BWV7 592 aa5.13□□□□□ -1.59
SCN1A-218ENST00000640036 OSBPL1AQ9BXW6 950 aa5.13□□□□□ -1.59
SCN1A-218ENST00000640036 TM6SF2Q9BZW4 377 aa5.13□□□□□ -1.59
SCN1A-218ENST00000640036 PIGUQ9H490 435 aa5.13□□□□□ -1.59
SCN1A-218ENST00000640036 NDE1Q9NXR1 346 aa5.13□□□□□ -1.59
SCN1A-218ENST00000640036 SUFUQ9UMX1 484 aa5.13□□□□□ -1.59
SCN1A-218ENST00000640036 RGS5O15539 181 aa5.13□□□□□ -1.59
SCN1A-218ENST00000640036 TPD52L2O43399 206 aaKnown RBP5.13□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms