RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 KAT7O95251 611 aa18.69■□□□□ 0.58
CLN3-239ENST00000628023 IPO7O95373 1038 aaKnown RBP18.69■□□□□ 0.58
CLN3-239ENST00000628023 CYP1A2P05177 515 aa18.69■□□□□ 0.58
CLN3-239ENST00000628023 HOXD9P28356 352 aaPredicted RBP18.69■□□□□ 0.58
CLN3-239ENST00000628023 GGCXP38435 758 aa18.69■□□□□ 0.58
CLN3-239ENST00000628023 GRIA2P42262 883 aa18.69■□□□□ 0.58
CLN3-239ENST00000628023 HDAC4P56524 1084 aa18.69■□□□□ 0.58
CLN3-239ENST00000628023 RPS24P62847 133 aaKnown RBP18.69■□□□□ 0.58
CLN3-239ENST00000628023 OGDHQ02218 1023 aa18.69■□□□□ 0.58
CLN3-239ENST00000628023 SIM2Q14190 667 aaPredicted RBP18.69■□□□□ 0.58
CLN3-239ENST00000628023 GAS6Q14393 721 aa18.69■□□□□ 0.58
CLN3-239ENST00000628023 SPA17Q15506 151 aa18.69■□□□□ 0.58
CLN3-239ENST00000628023 RAB6CQ53S08 254 aa18.69■□□□□ 0.58
CLN3-239ENST00000628023 LONP2Q86WA8 852 aa18.69■□□□□ 0.58
CLN3-239ENST00000628023 TMTC1Q8IUR5 882 aa18.69■□□□□ 0.58
CLN3-239ENST00000628023 CCDC170Q8IYT3 715 aa18.69■□□□□ 0.58
CLN3-239ENST00000628023 CENPIQ92674 756 aaPredicted RBP18.69■□□□□ 0.58
CLN3-239ENST00000628023 ARHGEF26Q96DR7 871 aa18.69■□□□□ 0.58
CLN3-239ENST00000628023 RPRD1AQ96P16 312 aaPredicted RBP18.69■□□□□ 0.58
CLN3-239ENST00000628023 TRIM7Q9C029 511 aa18.69■□□□□ 0.58
CLN3-239ENST00000628023 RAB6CQ9H0N0 254 aa18.69■□□□□ 0.58
CLN3-239ENST00000628023 FBRSL1Q9HCM7 1045 aaKnown RBP18.69■□□□□ 0.58
CLN3-239ENST00000628023 CTTNBP2NLQ9P2B4 639 aa18.69■□□□□ 0.58
CLN3-239ENST00000628023 ANAPC7Q9UJX3 599 aa18.69■□□□□ 0.58
CLN3-239ENST00000628023 VANGL2Q9ULK5 521 aa18.69■□□□□ 0.58
CLN3-239ENST00000628023 CHURC1-FNTBB4DL54 471 aa18.68■□□□□ 0.58
CLN3-239ENST00000628023 RNF8O76064 485 aa18.68■□□□□ 0.58
CLN3-239ENST00000628023 FNTBP49356 437 aa18.68■□□□□ 0.58
CLN3-239ENST00000628023 SEC13P55735 322 aa18.68■□□□□ 0.58
CLN3-239ENST00000628023 GSDMDP57764 484 aa18.68■□□□□ 0.58
CLN3-239ENST00000628023 CDH18Q13634 790 aa18.68■□□□□ 0.58
CLN3-239ENST00000628023 AUHQ13825 339 aaKnown RBP18.68■□□□□ 0.58
CLN3-239ENST00000628023 CCINQ13939 588 aa18.68■□□□□ 0.58
CLN3-239ENST00000628023 LPAL2Q16609 132 aa18.68■□□□□ 0.58
CLN3-239ENST00000628023 FBXO43Q4G163 708 aa18.68■□□□□ 0.58
CLN3-239ENST00000628023 MPP7Q5T2T1 576 aa18.68■□□□□ 0.58
CLN3-239ENST00000628023 ACBD5Q5T8D3 534 aaPredicted RBP18.68■□□□□ 0.58
CLN3-239ENST00000628023 TTC39BQ5VTQ0 682 aaPredicted RBP18.68■□□□□ 0.58
CLN3-239ENST00000628023 Q6ZS52 159 aa18.68■□□□□ 0.58
CLN3-239ENST00000628023 MFN1Q8IWA4 741 aa18.68■□□□□ 0.58
CLN3-239ENST00000628023 CFAP52Q8N1V2 620 aa18.68■□□□□ 0.58
CLN3-239ENST00000628023 CARNMT1Q8N4J0 409 aa18.68■□□□□ 0.58
CLN3-239ENST00000628023 TERB1Q8NA31 727 aa18.68■□□□□ 0.58
CLN3-239ENST00000628023 CCDC26Q8TAB7 109 aa18.68■□□□□ 0.58
CLN3-239ENST00000628023 ZNF564Q8TBZ8 553 aaPredicted RBP18.68■□□□□ 0.58
CLN3-239ENST00000628023 FNIP1Q8TF40 1166 aa18.68■□□□□ 0.58
CLN3-239ENST00000628023 P2RY11Q96G91 374 aa18.68■□□□□ 0.58
CLN3-239ENST00000628023 BAG1Q99933 345 aaPredicted RBP18.68■□□□□ 0.58
CLN3-239ENST00000628023 LUC7LQ9NQ29 371 aaKnown RBP18.68■□□□□ 0.58
CLN3-239ENST00000628023 ANLNQ9NQW6 1124 aa18.68■□□□□ 0.58
CLN3-239ENST00000628023 TMPRSS4Q9NRS4 437 aa18.68■□□□□ 0.58
CLN3-239ENST00000628023 CDV3Q9UKY7 258 aaKnown RBP18.68■□□□□ 0.58
CLN3-239ENST00000628023 SOWAHDA6NJG2 315 aa18.67■□□□□ 0.58
CLN3-239ENST00000628023 GFRA2O00451 464 aa18.67■□□□□ 0.58
CLN3-239ENST00000628023 TRIM24O15164 1050 aa18.67■□□□□ 0.58
CLN3-239ENST00000628023 ATG13O75143 517 aa18.67■□□□□ 0.58
CLN3-239ENST00000628023 RETP07949 1114 aa18.67■□□□□ 0.58
CLN3-239ENST00000628023 TMEM253P0C7T8 217 aa18.67■□□□□ 0.58
CLN3-239ENST00000628023 HOXA6P31267 233 aa18.67■□□□□ 0.58
CLN3-239ENST00000628023 C10orf76Q5T2E6 689 aa18.67■□□□□ 0.58
CLN3-239ENST00000628023 HEATR6Q6AI08 1181 aaKnown RBP18.67■□□□□ 0.58
CLN3-239ENST00000628023 LRRC31Q6UY01 552 aa18.67■□□□□ 0.58
CLN3-239ENST00000628023 ANKS1BQ7Z6G8 1248 aa18.67■□□□□ 0.58
CLN3-239ENST00000628023 CCDC185Q8N715 623 aa18.67■□□□□ 0.58
CLN3-239ENST00000628023 ZNF557Q8N988 423 aaPredicted RBP18.67■□□□□ 0.58
CLN3-239ENST00000628023 MYEOVQ96EZ4 313 aa18.67■□□□□ 0.58
CLN3-239ENST00000628023 HAPLN3Q96S86 360 aa18.67■□□□□ 0.58
CLN3-239ENST00000628023 PRMT1Q99873 361 aaKnown RBP18.67■□□□□ 0.58
CLN3-239ENST00000628023 SLC2A11Q9BYW1 496 aa18.67■□□□□ 0.58
CLN3-239ENST00000628023 UVRAGQ9P2Y5 699 aa18.67■□□□□ 0.58
CLN3-239ENST00000628023 SNX10Q9Y5X0 201 aa18.67■□□□□ 0.58
CLN3-239ENST00000628023 KIAA1549LQ6ZVL6 1849 aa18.67■□□□□ 0.58
CLN3-239ENST00000628023 H0Y626 953 aa18.66■□□□□ 0.58
CLN3-239ENST00000628023 LRP3O75074 770 aa18.66■□□□□ 0.58
CLN3-239ENST00000628023 RNF40O75150 1001 aa18.66■□□□□ 0.58
CLN3-239ENST00000628023 ADRA1BP35368 520 aa18.66■□□□□ 0.58
CLN3-239ENST00000628023 ZNF252P-AS1Q0IIN9 211 aa18.66■□□□□ 0.58
CLN3-239ENST00000628023 MESP2Q0VG99 397 aa18.66■□□□□ 0.58
CLN3-239ENST00000628023 PIGHQ14442 188 aaPredicted RBP18.66■□□□□ 0.58
CLN3-239ENST00000628023 EFHC2Q5JST6 749 aa18.66■□□□□ 0.58
CLN3-239ENST00000628023 FBXL22Q6P050 247 aa18.66■□□□□ 0.58
CLN3-239ENST00000628023 CEP68Q76N32 757 aa18.66■□□□□ 0.58
CLN3-239ENST00000628023 SLFN11Q7Z7L1 901 aa18.66■□□□□ 0.58
CLN3-239ENST00000628023 CIR1Q86X95 450 aaPredicted RBP18.66■□□□□ 0.58
CLN3-239ENST00000628023 PHTF2Q8N3S3 785 aa18.66■□□□□ 0.58
CLN3-239ENST00000628023 ANP32BQ92688 251 aaKnown RBP18.66■□□□□ 0.58
CLN3-239ENST00000628023 NTAN1Q96AB6 310 aa18.66■□□□□ 0.58
CLN3-239ENST00000628023 IP6K2Q9UHH9 426 aa18.66■□□□□ 0.58
CLN3-239ENST00000628023 CLEC4EQ9ULY5 219 aa18.66■□□□□ 0.58
CLN3-239ENST00000628023 A0A1B0GVM2 712 aa18.65■□□□□ 0.58
CLN3-239ENST00000628023 TCAF2A6NFQ2 919 aa18.65■□□□□ 0.58
CLN3-239ENST00000628023 I6L893 689 aaPredicted RBP18.65■□□□□ 0.58
CLN3-239ENST00000628023 K7ESF4 209 aa18.65■□□□□ 0.58
CLN3-239ENST00000628023 MYO1FO00160 1098 aa18.65■□□□□ 0.58
CLN3-239ENST00000628023 PRPSAP2O60256 369 aa18.65■□□□□ 0.58
CLN3-239ENST00000628023 SRGAP2O75044 1071 aa18.65■□□□□ 0.58
CLN3-239ENST00000628023 LUC7L3O95232 432 aaKnown RBP18.65■□□□□ 0.58
CLN3-239ENST00000628023 FECHP22830 423 aa18.65■□□□□ 0.58
CLN3-239ENST00000628023 MAGEA1P43355 309 aa18.65■□□□□ 0.58
CLN3-239ENST00000628023 TNFRSF4P43489 277 aa18.65■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms