RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 RGS5O15539 181 aa14.3□□□□□ -0.12
CPSF1-212ENST00000616140 USP17L7P0C7H9 530 aa14.3□□□□□ -0.12
CPSF1-212ENST00000616140 ADORA2AP29274 412 aa14.3□□□□□ -0.12
CPSF1-212ENST00000616140 SKIV2L2P42285 1042 aaKnown RBP14.3□□□□□ -0.12
CPSF1-212ENST00000616140 RAD23AP54725 363 aa14.3□□□□□ -0.12
CPSF1-212ENST00000616140 MRPS22P82650 360 aaKnown RBP14.3□□□□□ -0.12
CPSF1-212ENST00000616140 HIST2H2ACQ16777 129 aaPredicted RBP14.3□□□□□ -0.12
CPSF1-212ENST00000616140 HIST2H2AA3Q6FI13 130 aa14.3□□□□□ -0.12
CPSF1-212ENST00000616140 DNAJC14Q6Y2X3 702 aaPredicted RBP14.3□□□□□ -0.12
CPSF1-212ENST00000616140 PHF13Q86YI8 300 aaPredicted RBP14.3□□□□□ -0.12
CPSF1-212ENST00000616140 MRPS31Q92665 395 aaKnown RBP14.3□□□□□ -0.12
CPSF1-212ENST00000616140 ADGRE3Q9BY15 652 aa14.3□□□□□ -0.12
CPSF1-212ENST00000616140 ACSS3Q9H6R3 686 aa14.3□□□□□ -0.12
CPSF1-212ENST00000616140 PARVBQ9HBI1 364 aa14.3□□□□□ -0.12
CPSF1-212ENST00000616140 DMAP1Q9NPF5 467 aaPredicted RBP14.3□□□□□ -0.12
CPSF1-212ENST00000616140 SEPT3Q9UH03 358 aa14.3□□□□□ -0.12
CPSF1-212ENST00000616140 ATRNO75882 1429 aa14.3□□□□□ -0.12
CPSF1-212ENST00000616140 TPP1O14773 563 aa14.3□□□□□ -0.12
CPSF1-212ENST00000616140 CRABP2P29373 138 aa14.3□□□□□ -0.12
CPSF1-212ENST00000616140 ADCYAP1R1P41586 468 aa14.3□□□□□ -0.12
CPSF1-212ENST00000616140 TBX4P57082 545 aa14.3□□□□□ -0.12
CPSF1-212ENST00000616140 PARP6Q2NL67 630 aa14.3□□□□□ -0.12
CPSF1-212ENST00000616140 NEPROQ6NW34 567 aa14.3□□□□□ -0.12
CPSF1-212ENST00000616140 CENPLQ8N0S6 344 aaPredicted RBP14.3□□□□□ -0.12
CPSF1-212ENST00000616140 LZTR1Q8N653 840 aa14.3□□□□□ -0.12
CPSF1-212ENST00000616140 B3GALNT2Q8NCR0 500 aa14.3□□□□□ -0.12
CPSF1-212ENST00000616140 LPCAT1Q8NF37 534 aa14.3□□□□□ -0.12
CPSF1-212ENST00000616140 ZSCAN18Q8TBC5 510 aaPredicted RBP14.3□□□□□ -0.12
CPSF1-212ENST00000616140 WNT8BQ93098 351 aa14.3□□□□□ -0.12
CPSF1-212ENST00000616140 SMARCD1Q96GM5 515 aa14.3□□□□□ -0.12
CPSF1-212ENST00000616140 KREMEN1Q96MU8 473 aa14.3□□□□□ -0.12
CPSF1-212ENST00000616140 GAD1Q99259 594 aa14.3□□□□□ -0.12
CPSF1-212ENST00000616140 CDT1Q9H211 546 aa14.3□□□□□ -0.12
CPSF1-212ENST00000616140 NDUFAF1Q9Y375 327 aa14.3□□□□□ -0.12
CPSF1-212ENST00000616140 ASTN2O75129 1339 aaPredicted RBP14.3□□□□□ -0.12
CPSF1-212ENST00000616140 EPB42P16452 691 aa14.3□□□□□ -0.12
CPSF1-212ENST00000616140 SLC44A4Q53GD3 710 aa14.3□□□□□ -0.12
CPSF1-212ENST00000616140 LRP10Q7Z4F1 713 aa14.3□□□□□ -0.12
CPSF1-212ENST00000616140 DHFR2Q86XF0 187 aa14.3□□□□□ -0.12
CPSF1-212ENST00000616140 FAM120BQ96EK7 910 aaKnown RBP14.3□□□□□ -0.12
CPSF1-212ENST00000616140 VAT1Q99536 393 aa14.3□□□□□ -0.12
CPSF1-212ENST00000616140 PRDM12Q9H4Q4 367 aa14.3□□□□□ -0.12
CPSF1-212ENST00000616140 H2AFY2Q9P0M6 372 aaPredicted RBP14.3□□□□□ -0.12
CPSF1-212ENST00000616140 PPP2R3BQ9Y5P8 575 aa14.3□□□□□ -0.12
CPSF1-212ENST00000616140 hCG_1818297A0A087WSY0 165 aa14.29□□□□□ -0.12
CPSF1-212ENST00000616140 PPP1R11O60927 126 aaPredicted RBP14.29□□□□□ -0.12
CPSF1-212ENST00000616140 PSMG1O95456 288 aa14.29□□□□□ -0.12
CPSF1-212ENST00000616140 LGALS2P05162 132 aa14.29□□□□□ -0.12
CPSF1-212ENST00000616140 ABHD2P08910 425 aa14.29□□□□□ -0.12
CPSF1-212ENST00000616140 ITGB6P18564 788 aa14.29□□□□□ -0.12
CPSF1-212ENST00000616140 NOS2P35228 1153 aa14.29□□□□□ -0.12
CPSF1-212ENST00000616140 TGFB2P61812 414 aa14.29□□□□□ -0.12
CPSF1-212ENST00000616140 FKBP1AP62942 108 aaKnown RBP14.29□□□□□ -0.12
CPSF1-212ENST00000616140 SLC25A3Q00325 362 aa14.29□□□□□ -0.12
CPSF1-212ENST00000616140 UGCGQ16739 394 aa14.29□□□□□ -0.12
CPSF1-212ENST00000616140 UNC5AQ6ZN44 842 aa14.29□□□□□ -0.12
CPSF1-212ENST00000616140 C11orf74Q86VG3 221 aa14.29□□□□□ -0.12
CPSF1-212ENST00000616140 LRRN4Q8WUT4 740 aa14.29□□□□□ -0.12
CPSF1-212ENST00000616140 PCDHB18PQ96TA0 734 aa14.29□□□□□ -0.12
CPSF1-212ENST00000616140 CDHR5Q9HBB8 845 aa14.29□□□□□ -0.12
CPSF1-212ENST00000616140 GEMIN8Q9NWZ8 242 aaKnown RBP14.29□□□□□ -0.12
CPSF1-212ENST00000616140 TAS2R13Q9NYV9 303 aa14.29□□□□□ -0.12
CPSF1-212ENST00000616140 RBAK-RBAKDNI3L0D1 243 aa14.29□□□□□ -0.12
CPSF1-212ENST00000616140 NOL4O94818 638 aa14.29□□□□□ -0.12
CPSF1-212ENST00000616140 GUCA1CO95843 209 aa14.29□□□□□ -0.12
CPSF1-212ENST00000616140 ITGAVP06756 1048 aa14.29□□□□□ -0.12
CPSF1-212ENST00000616140 BDNFP23560 247 aa14.29□□□□□ -0.12
CPSF1-212ENST00000616140 POU1F1P28069 291 aa14.29□□□□□ -0.12
CPSF1-212ENST00000616140 MMP13P45452 471 aa14.29□□□□□ -0.12
CPSF1-212ENST00000616140 CDC16Q13042 620 aa14.29□□□□□ -0.12
CPSF1-212ENST00000616140 SHROOM1Q2M3G4 852 aaPredicted RBP14.29□□□□□ -0.12
CPSF1-212ENST00000616140 PTF1AQ7RTS3 328 aa14.29□□□□□ -0.12
CPSF1-212ENST00000616140 FAM126BQ8IXS8 530 aa14.29□□□□□ -0.12
CPSF1-212ENST00000616140 ATG16L2Q8NAA4 619 aa14.29□□□□□ -0.12
CPSF1-212ENST00000616140 SH3GL1Q99961 368 aa14.29□□□□□ -0.12
CPSF1-212ENST00000616140 MMADHCQ9H3L0 296 aaPredicted RBP14.29□□□□□ -0.12
CPSF1-212ENST00000616140 RMND5AQ9H871 391 aa14.29□□□□□ -0.12
CPSF1-212ENST00000616140 POLG2Q9UHN1 485 aa14.29□□□□□ -0.12
CPSF1-212ENST00000616140 PACSIN3Q9UKS6 424 aa14.29□□□□□ -0.12
CPSF1-212ENST00000616140 VAV3Q9UKW4 847 aa14.29□□□□□ -0.12
CPSF1-212ENST00000616140 CLOCKO15516 846 aa14.29□□□□□ -0.12
CPSF1-212ENST00000616140 KATNA1O75449 491 aa14.29□□□□□ -0.12
CPSF1-212ENST00000616140 PARNO95453 639 aaKnown RBP14.29□□□□□ -0.12
CPSF1-212ENST00000616140 FCGR1AP12314 374 aa14.29□□□□□ -0.12
CPSF1-212ENST00000616140 PAX7P23759 505 aa14.29□□□□□ -0.12
CPSF1-212ENST00000616140 BLVRAP53004 296 aa14.29□□□□□ -0.12
CPSF1-212ENST00000616140 FBXW4P57775 412 aa14.29□□□□□ -0.12
CPSF1-212ENST00000616140 VAC14Q08AM6 782 aa14.29□□□□□ -0.12
CPSF1-212ENST00000616140 IRGCQ6NXR0 463 aa14.29□□□□□ -0.12
CPSF1-212ENST00000616140 TAF2Q6P1X5 1199 aa14.29□□□□□ -0.12
CPSF1-212ENST00000616140 FNDC5Q8NAU1 212 aa14.29□□□□□ -0.12
CPSF1-212ENST00000616140 METTL6Q8TCB7 284 aa14.29□□□□□ -0.12
CPSF1-212ENST00000616140 SENP8Q96LD8 212 aa14.29□□□□□ -0.12
CPSF1-212ENST00000616140 SIKE1Q9BRV8 207 aa14.29□□□□□ -0.12
CPSF1-212ENST00000616140 ROGDIQ9GZN7 287 aa14.29□□□□□ -0.12
CPSF1-212ENST00000616140 PALMDQ9NP74 551 aa14.29□□□□□ -0.12
CPSF1-212ENST00000616140 VTA1Q9NP79 307 aa14.29□□□□□ -0.12
CPSF1-212ENST00000616140 XPNPEP3Q9NQH7 507 aa14.29□□□□□ -0.12
CPSF1-212ENST00000616140 OR12D3Q9UGF7 316 aa14.29□□□□□ -0.12
CPSF1-212ENST00000616140 CRYL1Q9Y2S2 319 aa14.29□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms