RNA–Protein interactions for RNA: ENST00000612856.4

FAM3A-221, Transcript of family with sequence similarity 3 member A, humanhuman

TSL 2

Gene FAM3A, Length 3,995 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FAM3A-221ENST00000612856 MARCKSL1P49006 195 aa11.12□□□□□ -0.63
FAM3A-221ENST00000612856 GJA9P57773 515 aa11.12□□□□□ -0.63
FAM3A-221ENST00000612856 AP2B1P63010 937 aa11.12□□□□□ -0.63
FAM3A-221ENST00000612856 PIGHQ14442 188 aaPredicted RBP11.12□□□□□ -0.63
FAM3A-221ENST00000612856 CNPY1Q3B7I2 92 aa11.12□□□□□ -0.63
FAM3A-221ENST00000612856 ZNF831Q5JPB2 1677 aa11.12□□□□□ -0.63
FAM3A-221ENST00000612856 RAP1GAP2Q684P5 730 aa11.12□□□□□ -0.63
FAM3A-221ENST00000612856 TRIM67Q6ZTA4 783 aa11.12□□□□□ -0.63
FAM3A-221ENST00000612856 CENPUQ71F23 418 aa11.12□□□□□ -0.63
FAM3A-221ENST00000612856 HS6ST3Q8IZP7 471 aa11.12□□□□□ -0.63
FAM3A-221ENST00000612856 CCNYL1Q8N7R7 359 aa11.12□□□□□ -0.63
FAM3A-221ENST00000612856 ACTL9Q8TC94 416 aa11.12□□□□□ -0.63
FAM3A-221ENST00000612856 CKAP2Q8WWK9 683 aa11.12□□□□□ -0.63
FAM3A-221ENST00000612856 TKTL2Q9H0I9 626 aa11.12□□□□□ -0.63
FAM3A-221ENST00000612856 WNT8AQ9H1J5 351 aa11.12□□□□□ -0.63
FAM3A-221ENST00000612856 DLEC1Q9Y238 1755 aa11.12□□□□□ -0.63
FAM3A-221ENST00000612856 ANKRD33BA6NCL7 494 aa11.12□□□□□ -0.63
FAM3A-221ENST00000612856 CDH16O75309 829 aa11.12□□□□□ -0.63
FAM3A-221ENST00000612856 TBX18O95935 607 aa11.12□□□□□ -0.63
FAM3A-221ENST00000612856 CLTBP09497 229 aa11.12□□□□□ -0.63
FAM3A-221ENST00000612856 CKBP12277 381 aa11.12□□□□□ -0.63
FAM3A-221ENST00000612856 OR1E1P30953 314 aa11.12□□□□□ -0.63
FAM3A-221ENST00000612856 CASP2P42575 452 aa11.12□□□□□ -0.63
FAM3A-221ENST00000612856 ACADSBP45954 432 aa11.12□□□□□ -0.63
FAM3A-221ENST00000612856 LILRA4P59901 499 aa11.12□□□□□ -0.63
FAM3A-221ENST00000612856 DSG1Q02413 1049 aa11.12□□□□□ -0.63
FAM3A-221ENST00000612856 LBRQ14739 615 aaKnown RBP11.12□□□□□ -0.63
FAM3A-221ENST00000612856 LVRNQ6Q4G3 990 aa11.12□□□□□ -0.63
FAM3A-221ENST00000612856 CES3Q6UWW8 571 aa11.12□□□□□ -0.63
FAM3A-221ENST00000612856 NT5DC3Q86UY8 548 aa11.12□□□□□ -0.63
FAM3A-221ENST00000612856 DENND1CQ8IV53 801 aa11.12□□□□□ -0.63
FAM3A-221ENST00000612856 LGI2Q8N0V4 545 aa11.12□□□□□ -0.63
FAM3A-221ENST00000612856 TMEM40Q8WWA1 233 aa11.12□□□□□ -0.63
FAM3A-221ENST00000612856 SGF29Q96ES7 293 aa11.12□□□□□ -0.63
FAM3A-221ENST00000612856 FIZ1Q96SL8 496 aa11.12□□□□□ -0.63
FAM3A-221ENST00000612856 PAAF1Q9BRP4 392 aa11.12□□□□□ -0.63
FAM3A-221ENST00000612856 NT5MQ9NPB1 228 aa11.12□□□□□ -0.63
FAM3A-221ENST00000612856 MORF4L1Q9UBU8 362 aa11.12□□□□□ -0.63
FAM3A-221ENST00000612856 HMGXB4Q9UGU5 601 aa11.12□□□□□ -0.63
FAM3A-221ENST00000612856 PHF2O75151 1096 aa11.12□□□□□ -0.63
FAM3A-221ENST00000612856 PDE5AO76074 875 aa11.12□□□□□ -0.63
FAM3A-221ENST00000612856 ECHS1P30084 290 aa11.12□□□□□ -0.63
FAM3A-221ENST00000612856 MAGEA10P43363 369 aaPredicted RBP11.12□□□□□ -0.63
FAM3A-221ENST00000612856 ITGA8P53708 1063 aa11.12□□□□□ -0.63
FAM3A-221ENST00000612856 NCKAP1LP55160 1127 aa11.12□□□□□ -0.63
FAM3A-221ENST00000612856 SMAD3P84022 425 aaKnown RBP11.12□□□□□ -0.63
FAM3A-221ENST00000612856 ASPHQ12797 758 aa11.12□□□□□ -0.63
FAM3A-221ENST00000612856 MPP3Q13368 585 aa11.12□□□□□ -0.63
FAM3A-221ENST00000612856 USP41Q3LFD5 358 aa11.12□□□□□ -0.63
FAM3A-221ENST00000612856 C9orf57Q5W0N0 161 aa11.12□□□□□ -0.63
FAM3A-221ENST00000612856 GET4Q7L5D6 327 aaPredicted RBP11.12□□□□□ -0.63
FAM3A-221ENST00000612856 ZBTB46Q86UZ6 589 aa11.12□□□□□ -0.63
FAM3A-221ENST00000612856 HOMEZQ8IX15 550 aa11.12□□□□□ -0.63
FAM3A-221ENST00000612856 MCOLN2Q8IZK6 566 aa11.12□□□□□ -0.63
FAM3A-221ENST00000612856 KCTD17Q8N5Z5 321 aa11.12□□□□□ -0.63
FAM3A-221ENST00000612856 TTPALQ9BTX7 342 aa11.12□□□□□ -0.63
FAM3A-221ENST00000612856 CHST12Q9NRB3 414 aa11.12□□□□□ -0.63
FAM3A-221ENST00000612856 MPP6Q9NZW5 540 aa11.12□□□□□ -0.63
FAM3A-221ENST00000612856 TSC22D4Q9Y3Q8 395 aa11.12□□□□□ -0.63
FAM3A-221ENST00000612856 LTFP02788 710 aa11.11□□□□□ -0.63
FAM3A-221ENST00000612856 TKTP29401 623 aaKnown RBP11.11□□□□□ -0.63
FAM3A-221ENST00000612856 NEK3P51956 506 aa11.11□□□□□ -0.63
FAM3A-221ENST00000612856 TBX4P57082 545 aa11.11□□□□□ -0.63
FAM3A-221ENST00000612856 OTUD4Q01804 1114 aaKnown RBP11.11□□□□□ -0.63
FAM3A-221ENST00000612856 TAF10Q12962 218 aa11.11□□□□□ -0.63
FAM3A-221ENST00000612856 MMRN1Q13201 1228 aa11.11□□□□□ -0.63
FAM3A-221ENST00000612856 CYLC2Q14093 348 aaPredicted RBP11.11□□□□□ -0.63
FAM3A-221ENST00000612856 KBTBD12Q3ZCT8 623 aa11.11□□□□□ -0.63
FAM3A-221ENST00000612856 HSP90AA5PQ58FG0 334 aa11.11□□□□□ -0.63
FAM3A-221ENST00000612856 ZNF572Q7Z3I7 529 aaPredicted RBP11.11□□□□□ -0.63
FAM3A-221ENST00000612856 SCAMP5Q8TAC9 235 aa11.11□□□□□ -0.63
FAM3A-221ENST00000612856 BADQ92934 168 aa11.11□□□□□ -0.63
FAM3A-221ENST00000612856 MTBPQ96DY7 904 aa11.11□□□□□ -0.63
FAM3A-221ENST00000612856 SMARCD1Q96GM5 515 aa11.11□□□□□ -0.63
FAM3A-221ENST00000612856 MAGEB18Q96M61 343 aa11.11□□□□□ -0.63
FAM3A-221ENST00000612856 FBXL21Q9UKT6 434 aa11.11□□□□□ -0.63
FAM3A-221ENST00000612856 SHOC2Q9UQ13 582 aa11.11□□□□□ -0.63
FAM3A-221ENST00000612856 AXLP30530 894 aa11.11□□□□□ -0.63
FAM3A-221ENST00000612856 ABCG1P45844 678 aa11.11□□□□□ -0.63
FAM3A-221ENST00000612856 KPNA1P52294 538 aaPredicted RBP11.11□□□□□ -0.63
FAM3A-221ENST00000612856 BMT2Q1RMZ1 405 aa11.11□□□□□ -0.63
FAM3A-221ENST00000612856 ASTE1Q2TB18 679 aaPredicted RBP11.11□□□□□ -0.63
FAM3A-221ENST00000612856 MFSD7Q6UXD7 560 aa11.11□□□□□ -0.63
FAM3A-221ENST00000612856 TRIML2Q8N7C3 387 aa11.11□□□□□ -0.63
FAM3A-221ENST00000612856 TRAPPC9Q96Q05 1148 aa11.11□□□□□ -0.63
FAM3A-221ENST00000612856 C16orf70Q9BSU1 422 aa11.11□□□□□ -0.63
FAM3A-221ENST00000612856 NIFKQ9BYG3 293 aaKnown RBP11.11□□□□□ -0.63
FAM3A-221ENST00000612856 DNAJB4Q9UDY4 337 aa11.11□□□□□ -0.63
FAM3A-221ENST00000612856 IPO11Q9UI26 975 aaKnown RBP11.11□□□□□ -0.63
FAM3A-221ENST00000612856 DOLKQ9UPQ8 538 aa11.11□□□□□ -0.63
FAM3A-221ENST00000612856 LRRC42Q9Y546 428 aa11.11□□□□□ -0.63
FAM3A-221ENST00000612856 C2orf71A6NGG8 1288 aa11.11□□□□□ -0.63
FAM3A-221ENST00000612856 KPNA3O00505 521 aaPredicted RBP11.11□□□□□ -0.63
FAM3A-221ENST00000612856 PSMG1O95456 288 aa11.11□□□□□ -0.63
FAM3A-221ENST00000612856 LYNP07948 512 aa11.11□□□□□ -0.63
FAM3A-221ENST00000612856 MIPP30301 263 aa11.11□□□□□ -0.63
FAM3A-221ENST00000612856 AFF1P51825 1210 aaKnown RBP11.11□□□□□ -0.63
FAM3A-221ENST00000612856 ALDH18A1P54886 795 aaKnown RBP11.11□□□□□ -0.63
FAM3A-221ENST00000612856 TIGD5Q53EQ6 642 aa11.11□□□□□ -0.63
FAM3A-221ENST00000612856 WASHC2DQ5SRD0 308 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms