RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 GABRG3Q99928 467 aa17.41■□□□□ 0.38
TRIM28-215ENST00000601150 ANLNQ9NQW6 1124 aa17.41■□□□□ 0.38
TRIM28-215ENST00000601150 CACNA2D2Q9NY47 1150 aa17.41■□□□□ 0.38
TRIM28-215ENST00000601150 VANGL2Q9ULK5 521 aa17.41■□□□□ 0.38
TRIM28-215ENST00000601150 STON1Q9Y6Q2 735 aa17.41■□□□□ 0.38
TRIM28-215ENST00000601150 DOCK4Q8N1I0 1966 aa17.4■□□□□ 0.38
TRIM28-215ENST00000601150 CKAP5Q14008 2032 aa17.4■□□□□ 0.38
TRIM28-215ENST00000601150 H0Y626 953 aa17.4■□□□□ 0.38
TRIM28-215ENST00000601150 GFRA3O60609 400 aa17.4■□□□□ 0.38
TRIM28-215ENST00000601150 FTLP02792 175 aaPredicted RBP17.4■□□□□ 0.38
TRIM28-215ENST00000601150 POLR2EP19388 210 aaKnown RBP17.4■□□□□ 0.38
TRIM28-215ENST00000601150 GGCXP38435 758 aa17.4■□□□□ 0.38
TRIM28-215ENST00000601150 LMAN2Q12907 356 aa17.4■□□□□ 0.38
TRIM28-215ENST00000601150 SRSF5Q13243 272 aaKnown RBP17.4■□□□□ 0.38
TRIM28-215ENST00000601150 PPP1R15BQ5SWA1 713 aa17.4■□□□□ 0.38
TRIM28-215ENST00000601150 FAM131BQ86XD5 332 aa17.4■□□□□ 0.38
TRIM28-215ENST00000601150 VSTM4Q8IW00 320 aa17.4■□□□□ 0.38
TRIM28-215ENST00000601150 CCAR2Q8N163 923 aaKnown RBP17.4■□□□□ 0.38
TRIM28-215ENST00000601150 SUMF1Q8NBK3 374 aa17.4■□□□□ 0.38
TRIM28-215ENST00000601150 GAB3Q8WWW8 586 aa17.4■□□□□ 0.38
TRIM28-215ENST00000601150 SORCS1Q8WY21 1168 aa17.4■□□□□ 0.38
TRIM28-215ENST00000601150 CENPIQ92674 756 aaPredicted RBP17.4■□□□□ 0.38
TRIM28-215ENST00000601150 LMLNQ96KR4 655 aa17.4■□□□□ 0.38
TRIM28-215ENST00000601150 C1orf74Q96LT6 269 aa17.4■□□□□ 0.38
TRIM28-215ENST00000601150 MCEEQ96PE7 176 aa17.4■□□□□ 0.38
TRIM28-215ENST00000601150 HAPLN3Q96S86 360 aa17.4■□□□□ 0.38
TRIM28-215ENST00000601150 PARVAQ9NVD7 372 aa17.4■□□□□ 0.38
TRIM28-215ENST00000601150 KIAA1522Q9P206 1035 aaPredicted RBP17.4■□□□□ 0.38
TRIM28-215ENST00000601150 A0A1B0GVM2 712 aa17.39■□□□□ 0.37
TRIM28-215ENST00000601150 A0A1W2PQF6 199 aa17.39■□□□□ 0.37
TRIM28-215ENST00000601150 TCRBV21S2A2A0A5A6 115 aa17.39■□□□□ 0.37
TRIM28-215ENST00000601150 TCAF2A6NFQ2 919 aa17.39■□□□□ 0.37
TRIM28-215ENST00000601150 I6L893 689 aaPredicted RBP17.39■□□□□ 0.37
TRIM28-215ENST00000601150 RPP40O75818 363 aaKnown RBP17.39■□□□□ 0.37
TRIM28-215ENST00000601150 ATP5BP06576 529 aaKnown RBP17.39■□□□□ 0.37
TRIM28-215ENST00000601150 ZNF143P52747 638 aaPredicted RBP17.39■□□□□ 0.37
TRIM28-215ENST00000601150 ENPP2Q13822 863 aa17.39■□□□□ 0.37
TRIM28-215ENST00000601150 SIM2Q14190 667 aaPredicted RBP17.39■□□□□ 0.37
TRIM28-215ENST00000601150 ZNF234Q14588 700 aa17.39■□□□□ 0.37
TRIM28-215ENST00000601150 FUT11Q495W5 492 aa17.39■□□□□ 0.37
TRIM28-215ENST00000601150 FSCBQ5H9T9 825 aa17.39■□□□□ 0.37
TRIM28-215ENST00000601150 SH3PXD2AQ5TCZ1 1133 aa17.39■□□□□ 0.37
TRIM28-215ENST00000601150 MBLAC2Q68D91 279 aa17.39■□□□□ 0.37
TRIM28-215ENST00000601150 DCUN1D2Q6PH85 259 aa17.39■□□□□ 0.37
TRIM28-215ENST00000601150 SARM1Q6SZW1 724 aa17.39■□□□□ 0.37
TRIM28-215ENST00000601150 LRRC31Q6UY01 552 aa17.39■□□□□ 0.37
TRIM28-215ENST00000601150 CEP68Q76N32 757 aa17.39■□□□□ 0.37
TRIM28-215ENST00000601150 C14orf80Q86SX3 495 aa17.39■□□□□ 0.37
TRIM28-215ENST00000601150 CIR1Q86X95 450 aaPredicted RBP17.39■□□□□ 0.37
TRIM28-215ENST00000601150 MDGA1Q8NFP4 955 aa17.39■□□□□ 0.37
TRIM28-215ENST00000601150 FAM172AQ8WUF8 416 aa17.39■□□□□ 0.37
TRIM28-215ENST00000601150 IGSF8Q969P0 613 aa17.39■□□□□ 0.37
TRIM28-215ENST00000601150 TRIM11Q96F44 468 aa17.39■□□□□ 0.37
TRIM28-215ENST00000601150 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP17.39■□□□□ 0.37
TRIM28-215ENST00000601150 TMPRSS4Q9NRS4 437 aa17.39■□□□□ 0.37
TRIM28-215ENST00000601150 BCCIPQ9P287 314 aaKnown RBP eCLIP17.39■□□□□ 0.37
TRIM28-215ENST00000601150 RAB23Q9ULC3 237 aa17.39■□□□□ 0.37
TRIM28-215ENST00000601150 PLA2G4CQ9UP65 541 aa17.39■□□□□ 0.37
TRIM28-215ENST00000601150 SMG5Q9UPR3 1016 aaKnown RBP17.39■□□□□ 0.37
TRIM28-215ENST00000601150 PLXND1Q9Y4D7 1925 aa17.39■□□□□ 0.37
TRIM28-215ENST00000601150 SPAG17Q6Q759 2223 aa17.39■□□□□ 0.37
TRIM28-215ENST00000601150 WASH3PC4AMC7 463 aa17.38■□□□□ 0.37
TRIM28-215ENST00000601150 ZBTB24O43167 697 aaPredicted RBP17.38■□□□□ 0.37
TRIM28-215ENST00000601150 MOCS3O95396 460 aa17.38■□□□□ 0.37
TRIM28-215ENST00000601150 TPM1P09493 284 aa17.38■□□□□ 0.37
TRIM28-215ENST00000601150 DESP17661 470 aa17.38■□□□□ 0.37
TRIM28-215ENST00000601150 HOXD11P31277 338 aaPredicted RBP17.38■□□□□ 0.37
TRIM28-215ENST00000601150 HNRNPH3P31942 346 aaKnown RBP17.38■□□□□ 0.37
TRIM28-215ENST00000601150 IL12RB1P42701 662 aa17.38■□□□□ 0.37
TRIM28-215ENST00000601150 OXCT1P55809 520 aa17.38■□□□□ 0.37
TRIM28-215ENST00000601150 RPL7AP62424 266 aaKnown RBP17.38■□□□□ 0.37
TRIM28-215ENST00000601150 MAMLD1Q13495 774 aa17.38■□□□□ 0.37
TRIM28-215ENST00000601150 SLC12A1Q13621 1099 aa17.38■□□□□ 0.37
TRIM28-215ENST00000601150 STARD3Q14849 445 aa17.38■□□□□ 0.37
TRIM28-215ENST00000601150 ARL13BQ3SXY8 428 aa17.38■□□□□ 0.37
TRIM28-215ENST00000601150 C5orf22Q49AR2 442 aa17.38■□□□□ 0.37
TRIM28-215ENST00000601150 RAB6CQ53S08 254 aa17.38■□□□□ 0.37
TRIM28-215ENST00000601150 PLEKHA7Q6IQ23 1121 aa17.38■□□□□ 0.37
TRIM28-215ENST00000601150 SERPINA13PQ6UXR4 307 aa17.38■□□□□ 0.37
TRIM28-215ENST00000601150 DRC7Q8IY82 874 aa17.38■□□□□ 0.37
TRIM28-215ENST00000601150 CYB5D2Q8WUJ1 264 aa17.38■□□□□ 0.37
TRIM28-215ENST00000601150 HMGB4Q8WW32 186 aa17.38■□□□□ 0.37
TRIM28-215ENST00000601150 TTC17Q96AE7 1141 aa17.38■□□□□ 0.37
TRIM28-215ENST00000601150 CNPY3Q9BT09 278 aa17.38■□□□□ 0.37
TRIM28-215ENST00000601150 TPSD1Q9BZJ3 242 aa17.38■□□□□ 0.37
TRIM28-215ENST00000601150 RAB6CQ9H0N0 254 aa17.38■□□□□ 0.37
TRIM28-215ENST00000601150 ISCUQ9H1K1 167 aa17.38■□□□□ 0.37
TRIM28-215ENST00000601150 ADAMTS1Q9UHI8 967 aa17.38■□□□□ 0.37
TRIM28-215ENST00000601150 SNX10Q9Y5X0 201 aa17.38■□□□□ 0.37
TRIM28-215ENST00000601150 RAD54BQ9Y620 910 aa17.38■□□□□ 0.37
TRIM28-215ENST00000601150 ZFHX2Q9C0A1 2572 aaPredicted RBP17.38■□□□□ 0.37
TRIM28-215ENST00000601150 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP17.37■□□□□ 0.37
TRIM28-215ENST00000601150 CCP110O43303 1012 aa17.37■□□□□ 0.37
TRIM28-215ENST00000601150 ATMINO43313 823 aaPredicted RBP17.37■□□□□ 0.37
TRIM28-215ENST00000601150 CLDN11O75508 207 aa17.37■□□□□ 0.37
TRIM28-215ENST00000601150 ASLP04424 464 aa17.37■□□□□ 0.37
TRIM28-215ENST00000601150 PLEKP08567 350 aaPredicted RBP17.37■□□□□ 0.37
TRIM28-215ENST00000601150 DLDP09622 509 aaKnown RBP17.37■□□□□ 0.37
TRIM28-215ENST00000601150 MYBL1P10243 752 aa17.37■□□□□ 0.37
TRIM28-215ENST00000601150 ADRA1BP35368 520 aa17.37■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms