RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 LUC7L3O95232 432 aaKnown RBP19.96■□□□□ 0.79
UPF1-209ENST00000600310 EGFP01133 1207 aa19.96■□□□□ 0.79
UPF1-209ENST00000600310 L1CAMP32004 1257 aa19.96■□□□□ 0.79
UPF1-209ENST00000600310 MAN1A1P33908 653 aa19.96■□□□□ 0.79
UPF1-209ENST00000600310 CCZ1BP86790 482 aa19.96■□□□□ 0.79
UPF1-209ENST00000600310 CCZ1P86791 482 aaPredicted RBP19.96■□□□□ 0.79
UPF1-209ENST00000600310 LRRC32Q14392 662 aa19.96■□□□□ 0.79
UPF1-209ENST00000600310 FBXO43Q4G163 708 aa19.96■□□□□ 0.79
UPF1-209ENST00000600310 MANEALQ5VSG8 457 aa19.96■□□□□ 0.79
UPF1-209ENST00000600310 DAB2IPQ5VWQ8 1189 aa19.96■□□□□ 0.79
UPF1-209ENST00000600310 CYP4V2Q6ZWL3 525 aaPredicted RBP19.96■□□□□ 0.79
UPF1-209ENST00000600310 PSTKQ8IV42 348 aaKnown RBP19.96■□□□□ 0.79
UPF1-209ENST00000600310 TERB1Q8NA31 727 aa19.96■□□□□ 0.79
UPF1-209ENST00000600310 FIBINQ8TAL6 211 aa19.96■□□□□ 0.79
UPF1-209ENST00000600310 EZH1Q92800 747 aaPredicted RBP19.96■□□□□ 0.79
UPF1-209ENST00000600310 DESI2Q9BSY9 194 aa19.96■□□□□ 0.79
UPF1-209ENST00000600310 MAGEB5Q9BZ81 275 aa19.96■□□□□ 0.79
UPF1-209ENST00000600310 LMAN1LQ9HAT1 526 aa19.96■□□□□ 0.79
UPF1-209ENST00000600310 HCN4Q9Y3Q4 1203 aa19.96■□□□□ 0.79
UPF1-209ENST00000600310 A0A1B0GVM2 712 aa19.95■□□□□ 0.78
UPF1-209ENST00000600310 TCAF2A6NFQ2 919 aa19.95■□□□□ 0.78
UPF1-209ENST00000600310 BTNL10A8MVZ5 291 aa19.95■□□□□ 0.78
UPF1-209ENST00000600310 PI15O43692 258 aa19.95■□□□□ 0.78
UPF1-209ENST00000600310 NRDCO43847 1150 aa19.95■□□□□ 0.78
UPF1-209ENST00000600310 IL1R2P27930 398 aa19.95■□□□□ 0.78
UPF1-209ENST00000600310 NOP2P46087 812 aaKnown RBP19.95■□□□□ 0.78
UPF1-209ENST00000600310 IRAK1P51617 712 aa19.95■□□□□ 0.78
UPF1-209ENST00000600310 KDSRQ06136 332 aa19.95■□□□□ 0.78
UPF1-209ENST00000600310 MESDQ14696 234 aa19.95■□□□□ 0.78
UPF1-209ENST00000600310 BOLA3Q53S33 107 aa19.95■□□□□ 0.78
UPF1-209ENST00000600310 ERMARDQ5T6L9 678 aa19.95■□□□□ 0.78
UPF1-209ENST00000600310 NUDT18Q6ZVK8 323 aa19.95■□□□□ 0.78
UPF1-209ENST00000600310 CHST9Q7L1S5 443 aa19.95■□□□□ 0.78
UPF1-209ENST00000600310 KIAA1328Q86T90 577 aa19.95■□□□□ 0.78
UPF1-209ENST00000600310 MFN1Q8IWA4 741 aa19.95■□□□□ 0.78
UPF1-209ENST00000600310 CCAR2Q8N163 923 aaKnown RBP19.95■□□□□ 0.78
UPF1-209ENST00000600310 TXLNBQ8N3L3 684 aa19.95■□□□□ 0.78
UPF1-209ENST00000600310 SYNPOQ8N3V7 929 aa19.95■□□□□ 0.78
UPF1-209ENST00000600310 SNRNP25Q9BV90 132 aaKnown RBP19.95■□□□□ 0.78
UPF1-209ENST00000600310 LACRTQ9GZZ8 138 aa19.95■□□□□ 0.78
UPF1-209ENST00000600310 PPARGC1AQ9UBK2 798 aaKnown RBP19.95■□□□□ 0.78
UPF1-209ENST00000600310 TBC1D3BA6NDS4 549 aa19.94■□□□□ 0.78
UPF1-209ENST00000600310 FAM72CH0Y354 149 aa19.94■□□□□ 0.78
UPF1-209ENST00000600310 K7EQS6 105 aa19.94■□□□□ 0.78
UPF1-209ENST00000600310 SRGAP2O75044 1071 aa19.94■□□□□ 0.78
UPF1-209ENST00000600310 LRIG2O94898 1065 aa19.94■□□□□ 0.78
UPF1-209ENST00000600310 TCF4P15884 667 aa19.94■□□□□ 0.78
UPF1-209ENST00000600310 HLA-FP30511 346 aa19.94■□□□□ 0.78
UPF1-209ENST00000600310 TNFRSF4P43489 277 aa19.94■□□□□ 0.78
UPF1-209ENST00000600310 RPS9P46781 194 aaKnown RBP19.94■□□□□ 0.78
UPF1-209ENST00000600310 CDH4P55283 916 aa19.94■□□□□ 0.78
UPF1-209ENST00000600310 SLC25A11Q02978 314 aaKnown RBP19.94■□□□□ 0.78
UPF1-209ENST00000600310 SEMA3BQ13214 749 aa19.94■□□□□ 0.78
UPF1-209ENST00000600310 CDH18Q13634 790 aa19.94■□□□□ 0.78
UPF1-209ENST00000600310 HADHQ16836 314 aaKnown RBP19.94■□□□□ 0.78
UPF1-209ENST00000600310 ALFQ53S48 1182 aa19.94■□□□□ 0.78
UPF1-209ENST00000600310 FAM72AQ5TYM5 149 aa19.94■□□□□ 0.78
UPF1-209ENST00000600310 FAM72DQ6L9T8 149 aa19.94■□□□□ 0.78
UPF1-209ENST00000600310 FAM72BQ86X60 149 aa19.94■□□□□ 0.78
UPF1-209ENST00000600310 CIR1Q86X95 450 aaPredicted RBP19.94■□□□□ 0.78
UPF1-209ENST00000600310 CCDC117Q8IWD4 279 aaPredicted RBP19.94■□□□□ 0.78
UPF1-209ENST00000600310 PYROXD2Q8N2H3 581 aa19.94■□□□□ 0.78
UPF1-209ENST00000600310 CARNMT1Q8N4J0 409 aa19.94■□□□□ 0.78
UPF1-209ENST00000600310 DDX51Q8N8A6 666 aaKnown RBP eCLIP19.94■□□□□ 0.78
UPF1-209ENST00000600310 WFDC5Q8TCV5 224 aa19.94■□□□□ 0.78
UPF1-209ENST00000600310 LMLNQ96KR4 655 aa19.94■□□□□ 0.78
UPF1-209ENST00000600310 RBM12Q9NTZ6 932 aaKnown RBP19.94■□□□□ 0.78
UPF1-209ENST00000600310 GPATCH2LQ9NWQ4 482 aa19.94■□□□□ 0.78
UPF1-209ENST00000600310 DLGAP2Q9P1A6 1054 aa19.94■□□□□ 0.78
UPF1-209ENST00000600310 AP4E1Q9UPM8 1137 aa19.94■□□□□ 0.78
UPF1-209ENST00000600310 ADGRG1Q9Y653 693 aa19.94■□□□□ 0.78
UPF1-209ENST00000600310 TMEM110-MUSTN1A8MSY1 372 aa19.93■□□□□ 0.78
UPF1-209ENST00000600310 H0Y626 953 aa19.93■□□□□ 0.78
UPF1-209ENST00000600310 CLDN11O75508 207 aa19.93■□□□□ 0.78
UPF1-209ENST00000600310 CNTN5O94779 1100 aa19.93■□□□□ 0.78
UPF1-209ENST00000600310 DCNP07585 359 aaKnown RBP19.93■□□□□ 0.78
UPF1-209ENST00000600310 MAGEA9P43362 315 aa19.93■□□□□ 0.78
UPF1-209ENST00000600310 GEN1Q17RS7 908 aa19.93■□□□□ 0.78
UPF1-209ENST00000600310 KIAA0907Q7Z7F0 614 aaPredicted RBP19.93■□□□□ 0.78
UPF1-209ENST00000600310 CPNE8Q86YQ8 564 aa19.93■□□□□ 0.78
UPF1-209ENST00000600310 SFTPA1Q8IWL2 248 aa19.93■□□□□ 0.78
UPF1-209ENST00000600310 TMEM105Q8N8V8 129 aa19.93■□□□□ 0.78
UPF1-209ENST00000600310 TEKT4Q8WW24 435 aa19.93■□□□□ 0.78
UPF1-209ENST00000600310 CALR3Q96L12 384 aaKnown RBP19.93■□□□□ 0.78
UPF1-209ENST00000600310 ZYG11BQ9C0D3 744 aa19.93■□□□□ 0.78
UPF1-209ENST00000600310 DHX35Q9H5Z1 703 aaKnown RBP19.93■□□□□ 0.78
UPF1-209ENST00000600310 RETREG1Q9H6L5 497 aa19.93■□□□□ 0.78
UPF1-209ENST00000600310 MPP6Q9NZW5 540 aa19.93■□□□□ 0.78
UPF1-209ENST00000600310 KIAA1522Q9P206 1035 aaPredicted RBP19.93■□□□□ 0.78
UPF1-209ENST00000600310 SALL4Q9UJQ4 1053 aa19.93■□□□□ 0.78
UPF1-209ENST00000600310 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP19.92■□□□□ 0.78
UPF1-209ENST00000600310 PRRT4C9JH25 899 aa19.92■□□□□ 0.78
UPF1-209ENST00000600310 PABPC1P11940 636 aaKnown RBP19.92■□□□□ 0.78
UPF1-209ENST00000600310 HOXC13P31276 330 aa19.92■□□□□ 0.78
UPF1-209ENST00000600310 SLC1A1P43005 524 aa19.92■□□□□ 0.78
UPF1-209ENST00000600310 KIF5AQ12840 1032 aa19.92■□□□□ 0.78
UPF1-209ENST00000600310 LMAN2Q12907 356 aa19.92■□□□□ 0.78
UPF1-209ENST00000600310 ZNF177Q13360 481 aaPredicted RBP19.92■□□□□ 0.78
UPF1-209ENST00000600310 CA9Q16790 459 aa19.92■□□□□ 0.78
UPF1-209ENST00000600310 FSCBQ5H9T9 825 aa19.92■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms