RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 SCAMP3O14828 347 aaKnown RBP13.17□□□□□ -0.3
UPF1-208ENST00000600012 KLF8O95600 359 aaPredicted RBP13.17□□□□□ -0.3
UPF1-208ENST00000600012 TUBB4AP04350 444 aa13.17□□□□□ -0.3
UPF1-208ENST00000600012 ATP1A1P05023 1023 aaKnown RBP13.17□□□□□ -0.3
UPF1-208ENST00000600012 ADH5P11766 374 aa13.17□□□□□ -0.3
UPF1-208ENST00000600012 YWHAQP27348 245 aa13.17□□□□□ -0.3
UPF1-208ENST00000600012 P2RY2P41231 377 aa13.17□□□□□ -0.3
UPF1-208ENST00000600012 ACADSBP45954 432 aa13.17□□□□□ -0.3
UPF1-208ENST00000600012 SLC6A11P48066 632 aa13.17□□□□□ -0.3
UPF1-208ENST00000600012 DHPSP49366 369 aaPredicted RBP13.17□□□□□ -0.3
UPF1-208ENST00000600012 RPL7AP62424 266 aaKnown RBP13.17□□□□□ -0.3
UPF1-208ENST00000600012 OGDHQ02218 1023 aa13.17□□□□□ -0.3
UPF1-208ENST00000600012 IFRD2Q12894 506 aaPredicted RBP13.17□□□□□ -0.3
UPF1-208ENST00000600012 EOGTQ5NDL2 527 aa13.17□□□□□ -0.3
UPF1-208ENST00000600012 C11orf63Q6NUN7 778 aa13.17□□□□□ -0.3
UPF1-208ENST00000600012 DCUN1D2Q6PH85 259 aa13.17□□□□□ -0.3
UPF1-208ENST00000600012 RHBDF2Q6PJF5 856 aa13.17□□□□□ -0.3
UPF1-208ENST00000600012 TMEM92Q6UXU6 159 aa13.17□□□□□ -0.3
UPF1-208ENST00000600012 SCUBE3Q8IX30 993 aa13.17□□□□□ -0.3
UPF1-208ENST00000600012 ALLCQ8N6M5 410 aa13.17□□□□□ -0.3
UPF1-208ENST00000600012 EMC1Q8N766 993 aa13.17□□□□□ -0.3
UPF1-208ENST00000600012 IL17RCQ8NAC3 791 aa13.17□□□□□ -0.3
UPF1-208ENST00000600012 TXNDC5Q8NBS9 432 aaKnown RBP13.17□□□□□ -0.3
UPF1-208ENST00000600012 KIF18AQ8NI77 898 aa13.17□□□□□ -0.3
UPF1-208ENST00000600012 KCTD13Q8WZ19 329 aa13.17□□□□□ -0.3
UPF1-208ENST00000600012 NDRG1Q92597 394 aaKnown RBP13.17□□□□□ -0.3
UPF1-208ENST00000600012 FBXO32Q969P5 355 aa13.17□□□□□ -0.3
UPF1-208ENST00000600012 OTUB2Q96DC9 234 aa13.17□□□□□ -0.3
UPF1-208ENST00000600012 ULBP1Q9BZM6 244 aa13.17□□□□□ -0.3
UPF1-208ENST00000600012 LRRC4Q9HBW1 653 aa13.17□□□□□ -0.3
UPF1-208ENST00000600012 CYLDQ9NQC7 956 aa13.17□□□□□ -0.3
UPF1-208ENST00000600012 ARHGEF4Q9NR80 690 aa13.17□□□□□ -0.3
UPF1-208ENST00000600012 EVLQ9UI08 416 aaPredicted RBP13.17□□□□□ -0.3
UPF1-208ENST00000600012 PACSIN2Q9UNF0 486 aaPredicted RBP13.17□□□□□ -0.3
UPF1-208ENST00000600012 A0A0A0MRY4 1105 aa13.16□□□□□ -0.3
UPF1-208ENST00000600012 TMEM191CA6NGB0 347 aa13.16□□□□□ -0.3
UPF1-208ENST00000600012 SIGLEC16A6NMB1 481 aa13.16□□□□□ -0.3
UPF1-208ENST00000600012 PATE3B3GLJ2 98 aa13.16□□□□□ -0.3
UPF1-208ENST00000600012 SGK1O00141 431 aa13.16□□□□□ -0.3
UPF1-208ENST00000600012 GRAP2O75791 330 aa13.16□□□□□ -0.3
UPF1-208ENST00000600012 CHRM1P11229 460 aaPredicted RBP13.16□□□□□ -0.3
UPF1-208ENST00000600012 KRT3P12035 628 aa13.16□□□□□ -0.3
UPF1-208ENST00000600012 HNRNPLP14866 589 aaKnown RBP eCLIP13.16□□□□□ -0.3
UPF1-208ENST00000600012 CSRP1P21291 193 aaKnown RBP13.16□□□□□ -0.3
UPF1-208ENST00000600012 TIE1P35590 1138 aa13.16□□□□□ -0.3
UPF1-208ENST00000600012 GRIA2P42262 883 aa13.16□□□□□ -0.3
UPF1-208ENST00000600012 DPP6P42658 865 aa13.16□□□□□ -0.3
UPF1-208ENST00000600012 TNFRSF4P43489 277 aa13.16□□□□□ -0.3
UPF1-208ENST00000600012 KIR2DL1P43626 348 aaPredicted RBP13.16□□□□□ -0.3
UPF1-208ENST00000600012 DNA2P51530 1060 aa13.16□□□□□ -0.3
UPF1-208ENST00000600012 TKTL1P51854 596 aa13.16□□□□□ -0.3
UPF1-208ENST00000600012 SNX16P57768 344 aa13.16□□□□□ -0.3
UPF1-208ENST00000600012 SLC6A3Q01959 620 aa13.16□□□□□ -0.3
UPF1-208ENST00000600012 GAD2Q05329 585 aa13.16□□□□□ -0.3
UPF1-208ENST00000600012 KDSRQ06136 332 aa13.16□□□□□ -0.3
UPF1-208ENST00000600012 ZNF252P-AS1Q0IIN9 211 aa13.16□□□□□ -0.3
UPF1-208ENST00000600012 MESP2Q0VG99 397 aa13.16□□□□□ -0.3
UPF1-208ENST00000600012 BYSLQ13895 437 aaKnown RBP13.16□□□□□ -0.3
UPF1-208ENST00000600012 TAF5Q15542 800 aa13.16□□□□□ -0.3
UPF1-208ENST00000600012 RAB41Q5JT25 222 aa13.16□□□□□ -0.3
UPF1-208ENST00000600012 SH3PXD2AQ5TCZ1 1133 aa13.16□□□□□ -0.3
UPF1-208ENST00000600012 LPCAT2Q7L5N7 544 aa13.16□□□□□ -0.3
UPF1-208ENST00000600012 SLFN11Q7Z7L1 901 aa13.16□□□□□ -0.3
UPF1-208ENST00000600012 C12orf40Q86WS4 652 aa13.16□□□□□ -0.3
UPF1-208ENST00000600012 SFTPA1Q8IWL2 248 aa13.16□□□□□ -0.3
UPF1-208ENST00000600012 SYCE1Q8N0S2 351 aa13.16□□□□□ -0.3
UPF1-208ENST00000600012 SIX6OS1Q8N1H7 587 aa13.16□□□□□ -0.3
UPF1-208ENST00000600012 PIGKQ92643 395 aa13.16□□□□□ -0.3
UPF1-208ENST00000600012 BCCIPQ9P287 314 aaKnown RBP eCLIP13.16□□□□□ -0.3
UPF1-208ENST00000600012 PCNX2A6NKB5 2137 aa13.16□□□□□ -0.3
UPF1-208ENST00000600012 LAMA1P25391 3075 aa13.16□□□□□ -0.3
UPF1-208ENST00000600012 CDX4O14627 284 aaPredicted RBP13.15□□□□□ -0.3
UPF1-208ENST00000600012 TNFRSF10BO14763 440 aa13.15□□□□□ -0.3
UPF1-208ENST00000600012 GIPC1O14908 333 aa13.15□□□□□ -0.3
UPF1-208ENST00000600012 HOXC11O43248 304 aaPredicted RBP13.15□□□□□ -0.3
UPF1-208ENST00000600012 MAP3K13O43283 966 aa13.15□□□□□ -0.3
UPF1-208ENST00000600012 COCHO43405 550 aa13.15□□□□□ -0.3
UPF1-208ENST00000600012 PROSCO94903 275 aa13.15□□□□□ -0.3
UPF1-208ENST00000600012 PROS1P07225 676 aa13.15□□□□□ -0.3
UPF1-208ENST00000600012 CEACAM1P13688 526 aa13.15□□□□□ -0.3
UPF1-208ENST00000600012 RFC1P35251 1148 aaPredicted RBP13.15□□□□□ -0.3
UPF1-208ENST00000600012 FLT3P36888 993 aa13.15□□□□□ -0.3
UPF1-208ENST00000600012 TUBP50607 506 aa13.15□□□□□ -0.3
UPF1-208ENST00000600012 RNASE9P60153 205 aaKnown RBP13.15□□□□□ -0.3
UPF1-208ENST00000600012 IRX4P78413 519 aa13.15□□□□□ -0.3
UPF1-208ENST00000600012 LMAN2Q12907 356 aa13.15□□□□□ -0.3
UPF1-208ENST00000600012 PREPLQ4J6C6 727 aaPredicted RBP13.15□□□□□ -0.3
UPF1-208ENST00000600012 SPDYCQ5MJ68 293 aa13.15□□□□□ -0.3
UPF1-208ENST00000600012 LY6G5CQ5SRR4 150 aa13.15□□□□□ -0.3
UPF1-208ENST00000600012 HECTD3Q5T447 861 aa13.15□□□□□ -0.3
UPF1-208ENST00000600012 MEI1Q5TIA1 1274 aa13.15□□□□□ -0.3
UPF1-208ENST00000600012 SNX30Q5VWJ9 437 aa13.15□□□□□ -0.3
UPF1-208ENST00000600012 BTBD8Q5XKL5 378 aa13.15□□□□□ -0.3
UPF1-208ENST00000600012 TRNP1Q6NT89 227 aa13.15□□□□□ -0.3
UPF1-208ENST00000600012 PEX26Q7Z412 305 aa13.15□□□□□ -0.3
UPF1-208ENST00000600012 NT5DC3Q86UY8 548 aa13.15□□□□□ -0.3
UPF1-208ENST00000600012 RLN3Q8WXF3 142 aa13.15□□□□□ -0.3
UPF1-208ENST00000600012 ZFRQ96KR1 1074 aaKnown RBP13.15□□□□□ -0.3
UPF1-208ENST00000600012 CALR3Q96L12 384 aaKnown RBP13.15□□□□□ -0.3
UPF1-208ENST00000600012 TLR10Q9BXR5 811 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms