RNA–Protein interactions for RNA: ENST00000584897.5

SMCHD1-211, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,143 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-211ENST00000584897 ALX1Q15699 326 aa2.09□□□□□ -2.08
SMCHD1-211ENST00000584897 AAK1Q2M2I8 961 aa2.09□□□□□ -2.08
SMCHD1-211ENST00000584897 MPEG1Q2M385 716 aa2.09□□□□□ -2.08
SMCHD1-211ENST00000584897 TBC1D25Q3MII6 688 aa2.09□□□□□ -2.08
SMCHD1-211ENST00000584897 FAM133BQ5BKY9 247 aaKnown RBP2.09□□□□□ -2.08
SMCHD1-211ENST00000584897 FAM47AQ5JRC9 791 aa2.09□□□□□ -2.08
SMCHD1-211ENST00000584897 ZBTB41Q5SVQ8 909 aa2.09□□□□□ -2.08
SMCHD1-211ENST00000584897 ZNF362Q5T0B9 420 aaPredicted RBP2.09□□□□□ -2.08
SMCHD1-211ENST00000584897 MZT2BQ6NZ67 158 aa2.09□□□□□ -2.08
SMCHD1-211ENST00000584897 CCDC129Q6ZRS4 1044 aa2.09□□□□□ -2.08
SMCHD1-211ENST00000584897 LARP4Q71RC2 724 aaKnown RBP eCLIP2.09□□□□□ -2.081e-7■■■□□ 15.8
SMCHD1-211ENST00000584897 RRAGAQ7L523 313 aa2.09□□□□□ -2.08
SMCHD1-211ENST00000584897 MCM10Q7L590 875 aa2.09□□□□□ -2.08
SMCHD1-211ENST00000584897 PRIMA1Q86XR5 153 aa2.09□□□□□ -2.08
SMCHD1-211ENST00000584897 SLC15A4Q8N697 577 aa2.09□□□□□ -2.08
SMCHD1-211ENST00000584897 TDRD7Q8NHU6 1098 aaKnown RBP2.09□□□□□ -2.08
SMCHD1-211ENST00000584897 IL17DQ8TAD2 202 aa2.09□□□□□ -2.08
SMCHD1-211ENST00000584897 FOXRED1Q96CU9 486 aaPredicted RBP2.09□□□□□ -2.08
SMCHD1-211ENST00000584897 RNF31Q96EP0 1072 aa2.09□□□□□ -2.08
SMCHD1-211ENST00000584897 IDI2Q9BXS1 227 aa2.09□□□□□ -2.08
SMCHD1-211ENST00000584897 IKZF4Q9H2S9 585 aa2.09□□□□□ -2.08
SMCHD1-211ENST00000584897 ELAC1Q9H777 363 aaKnown RBP2.09□□□□□ -2.08
SMCHD1-211ENST00000584897 ITM2CQ9NQX7 267 aa2.09□□□□□ -2.08
SMCHD1-211ENST00000584897 RASSF1Q9NS23 344 aa2.09□□□□□ -2.08
SMCHD1-211ENST00000584897 ST6GALNAC1Q9NSC7 600 aaPredicted RBP2.09□□□□□ -2.08
SMCHD1-211ENST00000584897 GJB4Q9NTQ9 266 aa2.09□□□□□ -2.08
SMCHD1-211ENST00000584897 ORC3Q9UBD5 711 aaPredicted RBP2.09□□□□□ -2.08
SMCHD1-211ENST00000584897 RBPJLQ9UBG7 517 aa2.09□□□□□ -2.08
SMCHD1-211ENST00000584897 TMEM98Q9Y2Y6 226 aa2.09□□□□□ -2.08
SMCHD1-211ENST00000584897 TRIM17Q9Y577 477 aa2.09□□□□□ -2.08
SMCHD1-211ENST00000584897 COX11Q9Y6N1 276 aa2.09□□□□□ -2.08
SMCHD1-211ENST00000584897 MYH13Q9UKX3 1938 aa2.09□□□□□ -2.08
SMCHD1-211ENST00000584897 SGTAO43765 313 aa2.08□□□□□ -2.08
SMCHD1-211ENST00000584897 TOX4O94842 621 aa2.08□□□□□ -2.08
SMCHD1-211ENST00000584897 DLDP09622 509 aaKnown RBP2.08□□□□□ -2.08
SMCHD1-211ENST00000584897 FTH1P19P0C7X4 201 aa2.08□□□□□ -2.08
SMCHD1-211ENST00000584897 ATP5JP18859 108 aa2.08□□□□□ -2.08
SMCHD1-211ENST00000584897 PRKAR1BP31321 381 aa2.08□□□□□ -2.08
SMCHD1-211ENST00000584897 EPS15P42566 896 aa2.08□□□□□ -2.08
SMCHD1-211ENST00000584897 MCAMP43121 646 aa2.08□□□□□ -2.08
SMCHD1-211ENST00000584897 TRIM25Q14258 630 aaKnown RBP2.08□□□□□ -2.08
SMCHD1-211ENST00000584897 KIF22Q14807 665 aa2.08□□□□□ -2.08
SMCHD1-211ENST00000584897 INSCQ1MX18 579 aa2.08□□□□□ -2.08
SMCHD1-211ENST00000584897 FAXCQ5TGI0 409 aa2.08□□□□□ -2.08
SMCHD1-211ENST00000584897 ICE2Q659A1 982 aa2.08□□□□□ -2.08
SMCHD1-211ENST00000584897 TBC1D9BQ66K14 1250 aa2.08□□□□□ -2.08
SMCHD1-211ENST00000584897 ARL6IP4Q66PJ3 421 aaKnown RBP2.08□□□□□ -2.08
SMCHD1-211ENST00000584897 SWSAP1Q6NVH7 229 aa2.08□□□□□ -2.08
SMCHD1-211ENST00000584897 SLC22A25Q6T423 547 aa2.08□□□□□ -2.08
SMCHD1-211ENST00000584897 CENPQQ7L2Z9 268 aaPredicted RBP2.08□□□□□ -2.08
SMCHD1-211ENST00000584897 CCDC91Q7Z6B0 441 aa2.08□□□□□ -2.08
SMCHD1-211ENST00000584897 SPARTQ8N0X7 666 aa2.08□□□□□ -2.08
SMCHD1-211ENST00000584897 BRI3BPQ8WY22 251 aa2.08□□□□□ -2.08
SMCHD1-211ENST00000584897 CPT1BQ92523 772 aa2.08□□□□□ -2.08
SMCHD1-211ENST00000584897 TEKT1Q969V4 418 aa2.08□□□□□ -2.08
SMCHD1-211ENST00000584897 ZNF764Q96H86 408 aaPredicted RBP2.08□□□□□ -2.08
SMCHD1-211ENST00000584897 PGBD1Q96JS3 809 aa2.08□□□□□ -2.08
SMCHD1-211ENST00000584897 SNX22Q96L94 193 aa2.08□□□□□ -2.08
SMCHD1-211ENST00000584897 DMRTA2Q96SC8 542 aa2.08□□□□□ -2.08
SMCHD1-211ENST00000584897 LSM14BQ9BX40 385 aaKnown RBP2.08□□□□□ -2.08
SMCHD1-211ENST00000584897 GLIS2Q9BZE0 524 aaPredicted RBP2.08□□□□□ -2.08
SMCHD1-211ENST00000584897 SCAND2PQ9GZW5 306 aaPredicted RBP2.08□□□□□ -2.08
SMCHD1-211ENST00000584897 CHODLQ9H9P2 273 aa2.08□□□□□ -2.08
SMCHD1-211ENST00000584897 A1CFQ9NQ94 594 aaKnown RBP2.08□□□□□ -2.08
SMCHD1-211ENST00000584897 HMG20BQ9P0W2 317 aa2.08□□□□□ -2.08
SMCHD1-211ENST00000584897 FNIP2Q9P278 1114 aa2.08□□□□□ -2.08
SMCHD1-211ENST00000584897 ARPP21Q9UBL0 812 aaPredicted RBP2.08□□□□□ -2.08
SMCHD1-211ENST00000584897 AJAP1Q9UKB5 411 aaPredicted RBP2.08□□□□□ -2.08
SMCHD1-211ENST00000584897 KIF3AQ9Y496 699 aa2.08□□□□□ -2.08
SMCHD1-211ENST00000584897 USP16Q9Y5T5 823 aa2.08□□□□□ -2.08
SMCHD1-211ENST00000584897 POLR2AP24928 1970 aaKnown RBP2.08□□□□□ -2.08
SMCHD1-211ENST00000584897 ZNF236Q9UL36 1845 aa2.08□□□□□ -2.08
SMCHD1-211ENST00000584897 CACNA1AO00555 2505 aa2.08□□□□□ -2.08
SMCHD1-211ENST00000584897 TRGV11A0A075B6L2 103 aa2.08□□□□□ -2.08
SMCHD1-211ENST00000584897 PI4KAP2A4QPH2 592 aa2.08□□□□□ -2.08
SMCHD1-211ENST00000584897 AQP12BA6NM10 295 aa2.08□□□□□ -2.08
SMCHD1-211ENST00000584897 MASP2O00187 686 aa2.08□□□□□ -2.08
SMCHD1-211ENST00000584897 ELL2O00472 640 aaPredicted RBP2.08□□□□□ -2.08
SMCHD1-211ENST00000584897 BTN3A1O00481 513 aa2.08□□□□□ -2.08
SMCHD1-211ENST00000584897 ZSCAN9O15535 394 aaPredicted RBP2.08□□□□□ -2.08
SMCHD1-211ENST00000584897 PPIP5K2O43314 1243 aa2.08□□□□□ -2.08
SMCHD1-211ENST00000584897 VPS4BO75351 444 aa2.08□□□□□ -2.08
SMCHD1-211ENST00000584897 ACTL6BO94805 426 aa2.08□□□□□ -2.08
SMCHD1-211ENST00000584897 NXPH3O95157 252 aa2.08□□□□□ -2.08
SMCHD1-211ENST00000584897 CSPG5O95196 566 aa2.08□□□□□ -2.08
SMCHD1-211ENST00000584897 SLPIP03973 132 aa2.08□□□□□ -2.08
SMCHD1-211ENST00000584897 CALM1P0DP23 149 aa2.08□□□□□ -2.08
SMCHD1-211ENST00000584897 CALM2P0DP24 149 aa2.08□□□□□ -2.08
SMCHD1-211ENST00000584897 CALM3P0DP25 149 aa2.08□□□□□ -2.08
SMCHD1-211ENST00000584897 TGFB3P10600 412 aa2.08□□□□□ -2.08
SMCHD1-211ENST00000584897 TYRP14679 529 aa2.08□□□□□ -2.08
SMCHD1-211ENST00000584897 CERS1P27544 350 aa2.08□□□□□ -2.08
SMCHD1-211ENST00000584897 ABCD1P33897 745 aa2.08□□□□□ -2.08
SMCHD1-211ENST00000584897 GNAQP50148 359 aa2.08□□□□□ -2.08
SMCHD1-211ENST00000584897 OAZ1P54368 228 aa2.08□□□□□ -2.08
SMCHD1-211ENST00000584897 RPP30P78346 268 aaKnown RBP2.08□□□□□ -2.08
SMCHD1-211ENST00000584897 CCNA1P78396 465 aa2.08□□□□□ -2.08
SMCHD1-211ENST00000584897 ORC2Q13416 577 aaPredicted RBP2.08□□□□□ -2.08
SMCHD1-211ENST00000584897 TOB2Q14106 344 aaPredicted RBP2.08□□□□□ -2.08
SMCHD1-211ENST00000584897 SBK1Q52WX2 424 aa2.08□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms