RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 CARNMT1Q8N4J0 409 aa21.21■□□□□ 0.99
SHMT1-209ENST00000582653 ZCCHC9Q8N567 271 aaKnown RBP21.21■□□□□ 0.99
SHMT1-209ENST00000582653 HJURPQ8NCD3 748 aaPredicted RBP21.21■□□□□ 0.99
SHMT1-209ENST00000582653 TTC17Q96AE7 1141 aa21.21■□□□□ 0.99
SHMT1-209ENST00000582653 CPXM1Q96SM3 734 aa21.21■□□□□ 0.99
SHMT1-209ENST00000582653 MTG2Q9H4K7 406 aa21.21■□□□□ 0.99
SHMT1-209ENST00000582653 EIF2B4Q9UI10 523 aaKnown RBP21.21■□□□□ 0.99
SHMT1-209ENST00000582653 NEUROG3Q9Y4Z2 214 aa21.21■□□□□ 0.99
SHMT1-209ENST00000582653 FRYQ5TBA9 3013 aa21.21■□□□□ 0.99
SHMT1-209ENST00000582653 FAM221BA6H8Z2 402 aa21.2■□□□□ 0.98
SHMT1-209ENST00000582653 FOXN3O00409 490 aaPredicted RBP21.2■□□□□ 0.98
SHMT1-209ENST00000582653 HYAL3O43820 417 aaPredicted RBP21.2■□□□□ 0.98
SHMT1-209ENST00000582653 ACSL1P33121 698 aa21.2■□□□□ 0.98
SHMT1-209ENST00000582653 RPS14P62263 151 aaKnown RBP21.2■□□□□ 0.98
SHMT1-209ENST00000582653 TRIP6Q15654 476 aaKnown RBP21.2■□□□□ 0.98
SHMT1-209ENST00000582653 VWA3BQ502W6 1294 aa21.2■□□□□ 0.98
SHMT1-209ENST00000582653 DCAF6Q58WW2 860 aa21.2■□□□□ 0.98
SHMT1-209ENST00000582653 FSCBQ5H9T9 825 aa21.2■□□□□ 0.98
SHMT1-209ENST00000582653 MIIPQ5JXC2 388 aa21.2■□□□□ 0.98
SHMT1-209ENST00000582653 RAP1GAP2Q684P5 730 aa21.2■□□□□ 0.98
SHMT1-209ENST00000582653 MMS22LQ6ZRQ5 1243 aa21.2■□□□□ 0.98
SHMT1-209ENST00000582653 GATA6Q92908 595 aa21.2■□□□□ 0.98
SHMT1-209ENST00000582653 PPP1R13BQ96KQ4 1090 aa21.2■□□□□ 0.98
SHMT1-209ENST00000582653 TRIM62Q9BVG3 475 aa21.2■□□□□ 0.98
SHMT1-209ENST00000582653 NUP62CLQ9H1M0 184 aa21.2■□□□□ 0.98
SHMT1-209ENST00000582653 NDST4Q9H3R1 872 aa21.2■□□□□ 0.98
SHMT1-209ENST00000582653 INTS6Q9UL03 887 aaKnown RBP21.2■□□□□ 0.98
SHMT1-209ENST00000582653 MSRB2Q9Y3D2 182 aa21.2■□□□□ 0.98
SHMT1-209ENST00000582653 PCDHB9Q9Y5E1 797 aa21.2■□□□□ 0.98
SHMT1-209ENST00000582653 GRAP2O75791 330 aa21.19■□□□□ 0.98
SHMT1-209ENST00000582653 IGLV3-25P01717 112 aa21.19■□□□□ 0.98
SHMT1-209ENST00000582653 PRKCSHP14314 528 aaPredicted RBP21.19■□□□□ 0.98
SHMT1-209ENST00000582653 CLCN1P35523 988 aa21.19■□□□□ 0.98
SHMT1-209ENST00000582653 PTK2Q05397 1052 aa21.19■□□□□ 0.98
SHMT1-209ENST00000582653 DPY19L2P1Q6NXN4 242 aa21.19■□□□□ 0.98
SHMT1-209ENST00000582653 IL27RAQ6UWB1 636 aa21.19■□□□□ 0.98
SHMT1-209ENST00000582653 SLC47A2Q86VL8 602 aa21.19■□□□□ 0.98
SHMT1-209ENST00000582653 LGI2Q8N0V4 545 aa21.19■□□□□ 0.98
SHMT1-209ENST00000582653 DEFB106AQ8N104 65 aa21.19■□□□□ 0.98
SHMT1-209ENST00000582653 CAMK1GQ96NX5 476 aa21.19■□□□□ 0.98
SHMT1-209ENST00000582653 TUBGCP2Q9BSJ2 902 aa21.19■□□□□ 0.98
SHMT1-209ENST00000582653 BTBD1Q9H0C5 482 aa21.19■□□□□ 0.98
SHMT1-209ENST00000582653 PLCB1Q9NQ66 1216 aa21.19■□□□□ 0.98
SHMT1-209ENST00000582653 PCDHGC3Q9UN70 934 aa21.19■□□□□ 0.98
SHMT1-209ENST00000582653 USP24Q9UPU5 2620 aa21.19■□□□□ 0.98
SHMT1-209ENST00000582653 MUC22E2RYF6 1773 aaPredicted RBP21.18■□□□□ 0.98
SHMT1-209ENST00000582653 SYNJ2BP-COX16A0A087WUM0 186 aa21.18■□□□□ 0.98
SHMT1-209ENST00000582653 TYW5A2RUC4 315 aaKnown RBP21.18■□□□□ 0.98
SHMT1-209ENST00000582653 TMEM8BA6NDV4 472 aa21.18■□□□□ 0.98
SHMT1-209ENST00000582653 APOEP02649 317 aa21.18■□□□□ 0.98
SHMT1-209ENST00000582653 DNTTP04053 509 aa21.18■□□□□ 0.98
SHMT1-209ENST00000582653 ASLP04424 464 aa21.18■□□□□ 0.98
SHMT1-209ENST00000582653 ZNF883P0CG24 379 aa21.18■□□□□ 0.98
SHMT1-209ENST00000582653 ERCC5P28715 1186 aaPredicted RBP21.18■□□□□ 0.98
SHMT1-209ENST00000582653 CSKP41240 450 aa21.18■□□□□ 0.98
SHMT1-209ENST00000582653 KCNMA1Q12791 1236 aa21.18■□□□□ 0.98
SHMT1-209ENST00000582653 EIF4EBP2Q13542 120 aaPredicted RBP21.18■□□□□ 0.98
SHMT1-209ENST00000582653 ZNF423Q2M1K9 1284 aa21.18■□□□□ 0.98
SHMT1-209ENST00000582653 DBX2Q6ZNG2 339 aa21.18■□□□□ 0.98
SHMT1-209ENST00000582653 CCDC117Q8IWD4 279 aaPredicted RBP21.18■□□□□ 0.98
SHMT1-209ENST00000582653 FAM114A1Q8IWE2 563 aa21.18■□□□□ 0.98
SHMT1-209ENST00000582653 KDM1BQ8NB78 822 aa21.18■□□□□ 0.98
SHMT1-209ENST00000582653 C1orf131Q8NDD1 294 aaKnown RBP21.18■□□□□ 0.98
SHMT1-209ENST00000582653 MYO19Q96H55 970 aa21.18■□□□□ 0.98
SHMT1-209ENST00000582653 C6orf106Q9H6K1 298 aaPredicted RBP21.18■□□□□ 0.98
SHMT1-209ENST00000582653 OSGEPQ9NPF4 335 aa21.18■□□□□ 0.98
SHMT1-209ENST00000582653 SAMSN1Q9NSI8 373 aaKnown RBP21.18■□□□□ 0.98
SHMT1-209ENST00000582653 COX16Q9P0S2 106 aa21.18■□□□□ 0.98
SHMT1-209ENST00000582653 ZMIZ1Q9ULJ6 1067 aa21.18■□□□□ 0.98
SHMT1-209ENST00000582653 FAM170AA1A519 330 aa21.17■□□□□ 0.98
SHMT1-209ENST00000582653 ERBB2P04626 1255 aa21.17■□□□□ 0.98
SHMT1-209ENST00000582653 TACR2P21452 398 aa21.17■□□□□ 0.98
SHMT1-209ENST00000582653 KRT9P35527 623 aa21.17■□□□□ 0.98
SHMT1-209ENST00000582653 CTSOP43234 321 aaPredicted RBP21.17■□□□□ 0.98
SHMT1-209ENST00000582653 NUMBP49757 651 aa21.17■□□□□ 0.98
SHMT1-209ENST00000582653 ST8SIA6P61647 398 aa21.17■□□□□ 0.98
SHMT1-209ENST00000582653 BNC1Q01954 994 aa21.17■□□□□ 0.98
SHMT1-209ENST00000582653 CDH18Q13634 790 aa21.17■□□□□ 0.98
SHMT1-209ENST00000582653 ARID5BQ14865 1188 aa21.17■□□□□ 0.98
SHMT1-209ENST00000582653 OR6B2Q6IFH4 312 aa21.17■□□□□ 0.98
SHMT1-209ENST00000582653 FAM183BPQ6ZVS7 135 aa21.17■□□□□ 0.98
SHMT1-209ENST00000582653 CHSY1Q86X52 802 aa21.17■□□□□ 0.98
SHMT1-209ENST00000582653 NAXDQ8IW45 347 aa21.17■□□□□ 0.98
SHMT1-209ENST00000582653 BTN2A3PQ96KV6 586 aa21.17■□□□□ 0.98
SHMT1-209ENST00000582653 SLC2A13Q96QE2 648 aa21.17■□□□□ 0.98
SHMT1-209ENST00000582653 RSPH9Q9H1X1 276 aaPredicted RBP21.17■□□□□ 0.98
SHMT1-209ENST00000582653 GAREM1Q9H706 876 aa21.17■□□□□ 0.98
SHMT1-209ENST00000582653 FAM204AQ9H8W3 233 aa21.17■□□□□ 0.98
SHMT1-209ENST00000582653 SGK2Q9HBY8 427 aa21.17■□□□□ 0.98
SHMT1-209ENST00000582653 LMBRD1Q9NUN5 540 aa21.17■□□□□ 0.98
SHMT1-209ENST00000582653 SLTMQ9NWH9 1034 aaKnown RBP eCLIP21.17■□□□□ 0.98
SHMT1-209ENST00000582653 SCML1Q9UN30 329 aa21.17■□□□□ 0.98
SHMT1-209ENST00000582653 ZBTB32Q9Y2Y4 487 aaPredicted RBP21.17■□□□□ 0.98
SHMT1-209ENST00000582653 CEP295Q9C0D2 2601 aa21.17■□□□□ 0.98
SHMT1-209ENST00000582653 WDFY3Q8IZQ1 3526 aa21.17■□□□□ 0.98
SHMT1-209ENST00000582653 KCNU1A8MYU2 1149 aa21.16■□□□□ 0.98
SHMT1-209ENST00000582653 PES1O00541 588 aaKnown RBP21.16■□□□□ 0.98
SHMT1-209ENST00000582653 LUC7L3O95232 432 aaKnown RBP21.16■□□□□ 0.98
SHMT1-209ENST00000582653 SEMA4FO95754 770 aa21.16■□□□□ 0.98
SHMT1-209ENST00000582653 CER1O95813 267 aa21.16■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms