RNA–Protein interactions for RNA: ENST00000581570.5

SS18-219, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 571 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-219ENST00000581570 FZD4Q9ULV1 537 aa13.25□□□□□ -0.29
SS18-219ENST00000581570 TPX2Q9ULW0 747 aaKnown RBP13.25□□□□□ -0.29
SS18-219ENST00000581570 MYH10P35580 1976 aa13.25□□□□□ -0.29
SS18-219ENST00000581570 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.24□□□□□ -0.29
SS18-219ENST00000581570 C10orf142B7Z368 130 aa13.24□□□□□ -0.29
SS18-219ENST00000581570 ASLP04424 464 aa13.24□□□□□ -0.29
SS18-219ENST00000581570 GOT1P17174 413 aa13.24□□□□□ -0.29
SS18-219ENST00000581570 SYT1P21579 422 aa13.24□□□□□ -0.29
SS18-219ENST00000581570 SLC8A3P57103 927 aa13.24□□□□□ -0.29
SS18-219ENST00000581570 PROX2Q3B8N5 592 aa13.24□□□□□ -0.29
SS18-219ENST00000581570 MPP7Q5T2T1 576 aa13.24□□□□□ -0.29
SS18-219ENST00000581570 C9orf64Q5T6V5 341 aa13.24□□□□□ -0.29
SS18-219ENST00000581570 PIK3R6Q5UE93 754 aa13.24□□□□□ -0.29
SS18-219ENST00000581570 CEP135Q66GS9 1140 aa13.24□□□□□ -0.29
SS18-219ENST00000581570 RFWD3Q6PCD5 774 aa13.24□□□□□ -0.29
SS18-219ENST00000581570 SND1Q7KZF4 910 aaKnown RBP eCLIP13.24□□□□□ -0.29
SS18-219ENST00000581570 SPATS2Q86XZ4 545 aaKnown RBP13.24□□□□□ -0.29
SS18-219ENST00000581570 LSMEM2Q8N112 164 aa13.24□□□□□ -0.29
SS18-219ENST00000581570 ZNF557Q8N988 423 aaPredicted RBP13.24□□□□□ -0.29
SS18-219ENST00000581570 MFSD2AQ8NA29 543 aa13.24□□□□□ -0.29
SS18-219ENST00000581570 LINC00301Q8NCQ3 95 aa13.24□□□□□ -0.29
SS18-219ENST00000581570 TAS1R2Q8TE23 839 aa13.24□□□□□ -0.29
SS18-219ENST00000581570 TMEM174Q8WUU8 243 aa13.24□□□□□ -0.29
SS18-219ENST00000581570 HIC2Q96JB3 615 aa13.24□□□□□ -0.29
SS18-219ENST00000581570 MAGEF1Q9HAY2 307 aa13.24□□□□□ -0.29
SS18-219ENST00000581570 PCDHB1Q9Y5F3 818 aa13.24□□□□□ -0.29
SS18-219ENST00000581570 TBC1D3DA0A087WVF3 549 aa13.23□□□□□ -0.29
SS18-219ENST00000581570 TBC1D3IA0A087WXS9 549 aa13.23□□□□□ -0.29
SS18-219ENST00000581570 TBC1D3EA0A087X179 549 aa13.23□□□□□ -0.29
SS18-219ENST00000581570 TBC1D3KA0A087X1G2 549 aa13.23□□□□□ -0.29
SS18-219ENST00000581570 GOLGA6L7A0A1B0GV03 622 aa13.23□□□□□ -0.29
SS18-219ENST00000581570 TARSL2A2RTX5 802 aaKnown RBP13.23□□□□□ -0.29
SS18-219ENST00000581570 TBC1D3FA6NER0 549 aaPredicted RBP13.23□□□□□ -0.29
SS18-219ENST00000581570 TBC1D3LB9A6J9 549 aa13.23□□□□□ -0.29
SS18-219ENST00000581570 SPTLC2O15270 562 aa13.23□□□□□ -0.29
SS18-219ENST00000581570 SIGLEC6O43699 453 aa13.23□□□□□ -0.29
SS18-219ENST00000581570 MAGEC1O60732 1142 aa13.23□□□□□ -0.29
SS18-219ENST00000581570 SDC3O75056 442 aa13.23□□□□□ -0.29
SS18-219ENST00000581570 WISP1O95388 367 aa13.23□□□□□ -0.29
SS18-219ENST00000581570 NR3C1P04150 777 aa13.23□□□□□ -0.29
SS18-219ENST00000581570 MPOP05164 745 aa13.23□□□□□ -0.29
SS18-219ENST00000581570 TBC1D3HP0C7X1 549 aa13.23□□□□□ -0.29
SS18-219ENST00000581570 CSKP41240 450 aa13.23□□□□□ -0.29
SS18-219ENST00000581570 AFMP43652 599 aa13.23□□□□□ -0.29
SS18-219ENST00000581570 GCLMP48507 274 aa13.23□□□□□ -0.29
SS18-219ENST00000581570 PSMD8P48556 350 aa13.23□□□□□ -0.29
SS18-219ENST00000581570 VAMP7P51809 220 aa13.23□□□□□ -0.29
SS18-219ENST00000581570 ADPRHP54922 357 aa13.23□□□□□ -0.29
SS18-219ENST00000581570 CUL4AQ13619 759 aa13.23□□□□□ -0.29
SS18-219ENST00000581570 CUL4BQ13620 913 aa13.23□□□□□ -0.29
SS18-219ENST00000581570 KMT5BQ4FZB7 885 aa13.23□□□□□ -0.29
SS18-219ENST00000581570 BSPRYQ5W0U4 402 aa13.23□□□□□ -0.29
SS18-219ENST00000581570 TBC1D3GQ6DHY5 549 aa13.23□□□□□ -0.29
SS18-219ENST00000581570 TBC1D3CQ6IPX1 549 aa13.23□□□□□ -0.29
SS18-219ENST00000581570 NAPEPLDQ6IQ20 393 aa13.23□□□□□ -0.29
SS18-219ENST00000581570 BHLHA9Q7RTU4 235 aa13.23□□□□□ -0.29
SS18-219ENST00000581570 PRPF39Q86UA1 669 aaKnown RBP13.23□□□□□ -0.29
SS18-219ENST00000581570 MFN1Q8IWA4 741 aa13.23□□□□□ -0.29
SS18-219ENST00000581570 TBC1D3Q8IZP1 549 aaPredicted RBP13.23□□□□□ -0.29
SS18-219ENST00000581570 ANKRD52Q8NB46 1076 aa13.23□□□□□ -0.29
SS18-219ENST00000581570 CCDC150Q8NCX0 1101 aa13.23□□□□□ -0.29
SS18-219ENST00000581570 KCNE4Q8WWG9 221 aa13.23□□□□□ -0.29
SS18-219ENST00000581570 EDEM1Q92611 657 aa13.23□□□□□ -0.29
SS18-219ENST00000581570 TTC9Q92623 222 aa13.23□□□□□ -0.29
SS18-219ENST00000581570 LMLNQ96KR4 655 aa13.23□□□□□ -0.29
SS18-219ENST00000581570 MRGPRX3Q96LB0 322 aa13.23□□□□□ -0.29
SS18-219ENST00000581570 IRX2Q9BZI1 471 aaPredicted RBP13.23□□□□□ -0.29
SS18-219ENST00000581570 STIM2Q9P246 746 aa13.23□□□□□ -0.29
SS18-219ENST00000581570 FRMD4BQ9Y2L6 1034 aa13.23□□□□□ -0.29
SS18-219ENST00000581570 TENM4Q6N022 2769 aa13.23□□□□□ -0.29
SS18-219ENST00000581570 TTC34A8MYJ7 566 aa13.22□□□□□ -0.29
SS18-219ENST00000581570 TRIM38O00635 465 aa13.22□□□□□ -0.29
SS18-219ENST00000581570 PDXKO00764 312 aa13.22□□□□□ -0.29
SS18-219ENST00000581570 POLR2DO15514 142 aaKnown RBP13.22□□□□□ -0.29
SS18-219ENST00000581570 KLK10O43240 276 aa13.22□□□□□ -0.29
SS18-219ENST00000581570 MSI1O43347 362 aaKnown RBP13.22□□□□□ -0.29
SS18-219ENST00000581570 SLC28A2O43868 658 aa13.22□□□□□ -0.29
SS18-219ENST00000581570 PPP6R2O75170 966 aa13.22□□□□□ -0.29
SS18-219ENST00000581570 C5AR1P21730 350 aa13.22□□□□□ -0.29
SS18-219ENST00000581570 GABREP78334 506 aa13.22□□□□□ -0.29
SS18-219ENST00000581570 DAB2P98082 770 aa13.22□□□□□ -0.29
SS18-219ENST00000581570 STK4Q13043 487 aa13.22□□□□□ -0.29
SS18-219ENST00000581570 ZNF211Q13398 564 aaPredicted RBP13.22□□□□□ -0.29
SS18-219ENST00000581570 ARID5BQ14865 1188 aa13.22□□□□□ -0.29
SS18-219ENST00000581570 ARHGAP17Q68EM7 881 aa13.22□□□□□ -0.29
SS18-219ENST00000581570 SHC4Q6S5L8 630 aa13.22□□□□□ -0.29
SS18-219ENST00000581570 AADATQ8N5Z0 425 aa13.22□□□□□ -0.29
SS18-219ENST00000581570 KDM1BQ8NB78 822 aa13.22□□□□□ -0.29
SS18-219ENST00000581570 SLC4A11Q8NBS3 891 aa13.22□□□□□ -0.29
SS18-219ENST00000581570 FIBINQ8TAL6 211 aa13.22□□□□□ -0.29
SS18-219ENST00000581570 IPO9Q96P70 1041 aaKnown RBP13.22□□□□□ -0.29
SS18-219ENST00000581570 FAM129BQ96TA1 746 aa13.22□□□□□ -0.29
SS18-219ENST00000581570 KCTD10Q9H3F6 313 aa13.22□□□□□ -0.29
SS18-219ENST00000581570 ZSCAN16Q9H4T2 348 aaPredicted RBP13.22□□□□□ -0.29
SS18-219ENST00000581570 LRRC4Q9HBW1 653 aa13.22□□□□□ -0.29
SS18-219ENST00000581570 INTS6Q9UL03 887 aaKnown RBP13.22□□□□□ -0.29
SS18-219ENST00000581570 ERVW-1Q9UQF0 538 aa13.22□□□□□ -0.29
SS18-219ENST00000581570 PLXNA2O75051 1894 aa13.22□□□□□ -0.29
SS18-219ENST00000581570 EDDM13A0A1B0GTR0 161 aa13.21□□□□□ -0.29
SS18-219ENST00000581570 YJEFN3A6XGL0 299 aa13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms