RNA–Protein interactions for RNA: ENST00000581021.5

SS18-218, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 588 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-218ENST00000581021 HMGB4Q8WW32 186 aa20.8■□□□□ 0.92
SS18-218ENST00000581021 SLC6A17Q9H1V8 727 aa20.8■□□□□ 0.92
SS18-218ENST00000581021 INVSQ9Y283 1065 aa20.8■□□□□ 0.92
SS18-218ENST00000581021 TMCO5BA8MYB1 307 aa20.79■□□□□ 0.92
SS18-218ENST00000581021 RPP40O75818 363 aaKnown RBP20.79■□□□□ 0.92
SS18-218ENST00000581021 ENDOD1O94919 500 aa20.79■□□□□ 0.92
SS18-218ENST00000581021 GABRG2P18507 467 aa20.79■□□□□ 0.92
SS18-218ENST00000581021 TNFAIP3P21580 790 aa20.79■□□□□ 0.92
SS18-218ENST00000581021 RRM1P23921 792 aa20.79■□□□□ 0.92
SS18-218ENST00000581021 RDXP35241 583 aaKnown RBP20.79■□□□□ 0.92
SS18-218ENST00000581021 BRMS1LQ5PSV4 323 aa20.79■□□□□ 0.92
SS18-218ENST00000581021 MBLAC2Q68D91 279 aa20.79■□□□□ 0.92
SS18-218ENST00000581021 PRR23BQ6ZRT6 265 aa20.79■□□□□ 0.92
SS18-218ENST00000581021 KBTBD6Q86V97 674 aa20.79■□□□□ 0.92
SS18-218ENST00000581021 AHI1Q8N157 1196 aa20.79■□□□□ 0.92
SS18-218ENST00000581021 OR52K2Q8NGK3 314 aa20.79■□□□□ 0.92
SS18-218ENST00000581021 WFIKKN2Q8TEU8 576 aa20.79■□□□□ 0.92
SS18-218ENST00000581021 CPLX3Q8WVH0 158 aa20.79■□□□□ 0.92
SS18-218ENST00000581021 NUP58Q9BVL2 599 aa20.79■□□□□ 0.92
SS18-218ENST00000581021 WDCPQ9H6R7 721 aa20.79■□□□□ 0.92
SS18-218ENST00000581021 SLC12A6Q9UHW9 1150 aa20.79■□□□□ 0.92
SS18-218ENST00000581021 VANGL2Q9ULK5 521 aa20.79■□□□□ 0.92
SS18-218ENST00000581021 CAPN11Q9UMQ6 739 aa20.79■□□□□ 0.92
SS18-218ENST00000581021 PTPRZ1P23471 2315 aaPredicted RBP20.79■□□□□ 0.92
SS18-218ENST00000581021 ITIH6Q6UXX5 1313 aa20.78■□□□□ 0.92
SS18-218ENST00000581021 ATMINO43313 823 aaPredicted RBP20.78■□□□□ 0.92
SS18-218ENST00000581021 PLEKP08567 350 aaPredicted RBP20.78■□□□□ 0.92
SS18-218ENST00000581021 KRT3P12035 628 aa20.78■□□□□ 0.92
SS18-218ENST00000581021 PDGFRAP16234 1089 aa20.78■□□□□ 0.92
SS18-218ENST00000581021 CNR2P34972 360 aa20.78■□□□□ 0.92
SS18-218ENST00000581021 PTPN9P43378 593 aa20.78■□□□□ 0.92
SS18-218ENST00000581021 NUMBP49757 651 aa20.78■□□□□ 0.92
SS18-218ENST00000581021 RPL7AP62424 266 aaKnown RBP20.78■□□□□ 0.92
SS18-218ENST00000581021 KLHL30Q0D2K2 578 aa20.78■□□□□ 0.92
SS18-218ENST00000581021 CDH18Q13634 790 aa20.78■□□□□ 0.92
SS18-218ENST00000581021 CDO1Q16878 200 aa20.78■□□□□ 0.92
SS18-218ENST00000581021 CXorf57Q6NSI4 855 aaKnown RBP20.78■□□□□ 0.92
SS18-218ENST00000581021 WDR59Q6PJI9 974 aa20.78■□□□□ 0.92
SS18-218ENST00000581021 CCAR2Q8N163 923 aaKnown RBP20.78■□□□□ 0.92
SS18-218ENST00000581021 FRMD1Q8N878 549 aa20.78■□□□□ 0.92
SS18-218ENST00000581021 SIK2Q9H0K1 926 aa20.78■□□□□ 0.92
SS18-218ENST00000581021 POLMQ9NP87 494 aaPredicted RBP20.78■□□□□ 0.92
SS18-218ENST00000581021 SIGLEC16A6NMB1 481 aa20.77■□□□□ 0.92
SS18-218ENST00000581021 AP5Z1O43299 807 aa20.77■□□□□ 0.92
SS18-218ENST00000581021 CNTN5O94779 1100 aa20.77■□□□□ 0.92
SS18-218ENST00000581021 F9P00740 461 aa20.77■□□□□ 0.92
SS18-218ENST00000581021 HLA-EP13747 358 aa20.77■□□□□ 0.92
SS18-218ENST00000581021 NDUFV2P19404 249 aa20.77■□□□□ 0.92
SS18-218ENST00000581021 BCKDHBP21953 392 aa20.77■□□□□ 0.92
SS18-218ENST00000581021 CSKP41240 450 aa20.77■□□□□ 0.92
SS18-218ENST00000581021 HDAC4P56524 1084 aa20.77■□□□□ 0.92
SS18-218ENST00000581021 ZBED6P86452 979 aa20.77■□□□□ 0.92
SS18-218ENST00000581021 OGDHQ02218 1023 aa20.77■□□□□ 0.92
SS18-218ENST00000581021 C5orf22Q49AR2 442 aa20.77■□□□□ 0.92
SS18-218ENST00000581021 DNAJC24Q6P3W2 148 aa20.77■□□□□ 0.92
SS18-218ENST00000581021 FAM160A2Q8N612 972 aaPredicted RBP20.77■□□□□ 0.92
SS18-218ENST00000581021 ZNF366Q8N895 744 aa20.77■□□□□ 0.92
SS18-218ENST00000581021 RLN3Q8WXF3 142 aa20.77■□□□□ 0.92
SS18-218ENST00000581021 CENPIQ92674 756 aaPredicted RBP20.77■□□□□ 0.92
SS18-218ENST00000581021 MYO19Q96H55 970 aa20.77■□□□□ 0.92
SS18-218ENST00000581021 RPRD1AQ96P16 312 aaPredicted RBP20.77■□□□□ 0.92
SS18-218ENST00000581021 MCEEQ96PE7 176 aa20.77■□□□□ 0.92
SS18-218ENST00000581021 SELENOOQ9BVL4 669 aa20.77■□□□□ 0.92
SS18-218ENST00000581021 MAGEB5Q9BZ81 275 aa20.77■□□□□ 0.92
SS18-218ENST00000581021 TMEM245Q9H330 911 aa20.77■□□□□ 0.92
SS18-218ENST00000581021 CD93Q9NPY3 652 aa20.77■□□□□ 0.92
SS18-218ENST00000581021 CKAP5Q14008 2032 aa20.77■□□□□ 0.91
SS18-218ENST00000581021 TYW5A2RUC4 315 aaKnown RBP20.76■□□□□ 0.91
SS18-218ENST00000581021 SDC4P31431 198 aa20.76■□□□□ 0.91
SS18-218ENST00000581021 CASP14P31944 242 aa20.76■□□□□ 0.91
SS18-218ENST00000581021 CTSOP43234 321 aaPredicted RBP20.76■□□□□ 0.91
SS18-218ENST00000581021 ALFQ53S48 1182 aa20.76■□□□□ 0.91
SS18-218ENST00000581021 PITRM1Q5JRX3 1037 aa20.76■□□□□ 0.91
SS18-218ENST00000581021 CEP68Q76N32 757 aa20.76■□□□□ 0.91
SS18-218ENST00000581021 SND1Q7KZF4 910 aaKnown RBP eCLIP20.76■□□□□ 0.91
SS18-218ENST00000581021 APCDD1Q8J025 514 aa20.76■□□□□ 0.91
SS18-218ENST00000581021 UCMAQ8WVF2 138 aa20.76■□□□□ 0.91
SS18-218ENST00000581021 SYN2Q92777 582 aaPredicted RBP20.76■□□□□ 0.91
SS18-218ENST00000581021 TTC17Q96AE7 1141 aa20.76■□□□□ 0.91
SS18-218ENST00000581021 MRGPRX3Q96LB0 322 aa20.76■□□□□ 0.91
SS18-218ENST00000581021 SDK1Q7Z5N4 2213 aa20.76■□□□□ 0.91
SS18-218ENST00000581021 A0A1B0GVM2 712 aa20.75■□□□□ 0.91
SS18-218ENST00000581021 TCAF2A6NFQ2 919 aa20.75■□□□□ 0.91
SS18-218ENST00000581021 H0Y626 953 aa20.75■□□□□ 0.91
SS18-218ENST00000581021 CCP110O43303 1012 aa20.75■□□□□ 0.91
SS18-218ENST00000581021 TIMM44O43615 452 aa20.75■□□□□ 0.91
SS18-218ENST00000581021 ALDH1A2O94788 518 aa20.75■□□□□ 0.91
SS18-218ENST00000581021 DLDP09622 509 aaKnown RBP20.75■□□□□ 0.91
SS18-218ENST00000581021 GPD1P21695 349 aa20.75■□□□□ 0.91
SS18-218ENST00000581021 MZF1P28698 734 aaPredicted RBP20.75■□□□□ 0.91
SS18-218ENST00000581021 MAP7D1Q3KQU3 841 aa20.75■□□□□ 0.91
SS18-218ENST00000581021 PLK5Q496M5 336 aa20.75■□□□□ 0.91
SS18-218ENST00000581021 RABGAP1LQ5R372 815 aa20.75■□□□□ 0.91
SS18-218ENST00000581021 TTC39BQ5VTQ0 682 aaPredicted RBP20.75■□□□□ 0.91
SS18-218ENST00000581021 SDE2Q6IQ49 451 aa20.75■□□□□ 0.91
SS18-218ENST00000581021 CCDC185Q8N715 623 aa20.75■□□□□ 0.91
SS18-218ENST00000581021 FAM172AQ8WUF8 416 aa20.75■□□□□ 0.91
SS18-218ENST00000581021 RUBCNQ92622 972 aa20.75■□□□□ 0.91
SS18-218ENST00000581021 ALG14Q96F25 216 aa20.75■□□□□ 0.91
SS18-218ENST00000581021 MRGPRX1Q96LB2 322 aa20.75■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms