RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 ARL14EPQ8N8R7 260 aaPredicted RBP7.11□□□□□ -1.27
SS18-214ENST00000580003 CPT1BQ92523 772 aa7.11□□□□□ -1.27
SS18-214ENST00000580003 ZFYVE19Q96K21 471 aa7.11□□□□□ -1.27
SS18-214ENST00000580003 PABPC3Q9H361 631 aaKnown RBP7.11□□□□□ -1.27
SS18-214ENST00000580003 PRDM8Q9NQV8 689 aa7.11□□□□□ -1.27
SS18-214ENST00000580003 C19orf53Q9UNZ5 99 aaPredicted RBP7.11□□□□□ -1.27
SS18-214ENST00000580003 CYP3A7-CYP3A51PA0A087WV96 503 aa7.1□□□□□ -1.27
SS18-214ENST00000580003 CYP3A7P24462 503 aa7.1□□□□□ -1.27
SS18-214ENST00000580003 NR4A2P43354 598 aa7.1□□□□□ -1.27
SS18-214ENST00000580003 CDK7P50613 346 aa7.1□□□□□ -1.27
SS18-214ENST00000580003 CCDC174Q6PII3 467 aa7.1□□□□□ -1.27
SS18-214ENST00000580003 ADGRF3Q8IZF5 1079 aa7.1□□□□□ -1.27
SS18-214ENST00000580003 CACNA2D3Q8IZS8 1091 aa7.1□□□□□ -1.27
SS18-214ENST00000580003 OR52N4Q8NGI2 321 aa7.1□□□□□ -1.27
SS18-214ENST00000580003 C3orf49Q96BT1 292 aa7.1□□□□□ -1.27
SS18-214ENST00000580003 ZNF347Q96SE7 839 aa7.1□□□□□ -1.27
SS18-214ENST00000580003 MLXIPQ9HAP2 919 aa7.1□□□□□ -1.27
SS18-214ENST00000580003 HEY2Q9UBP5 337 aa7.1□□□□□ -1.27
SS18-214ENST00000580003 DAPP1Q9UN19 280 aa7.1□□□□□ -1.27
SS18-214ENST00000580003 HS3ST3B1Q9Y662 390 aa7.1□□□□□ -1.27
SS18-214ENST00000580003 PRPF4O43172 522 aaKnown RBP eCLIP7.09□□□□□ -1.27
SS18-214ENST00000580003 BMP15O95972 392 aa7.09□□□□□ -1.27
SS18-214ENST00000580003 ME1P48163 572 aa7.09□□□□□ -1.27
SS18-214ENST00000580003 PCP4P48539 62 aa7.09□□□□□ -1.27
SS18-214ENST00000580003 B4GALNT1Q00973 533 aa7.09□□□□□ -1.27
SS18-214ENST00000580003 FOXO1Q12778 655 aa7.09□□□□□ -1.27
SS18-214ENST00000580003 MTX1Q13505 466 aa7.09□□□□□ -1.27
SS18-214ENST00000580003 LAMB3Q13751 1172 aa7.09□□□□□ -1.27
SS18-214ENST00000580003 KRT72Q14CN4 511 aa7.09□□□□□ -1.27
SS18-214ENST00000580003 C10orf62Q5T681 223 aaPredicted RBP7.09□□□□□ -1.27
SS18-214ENST00000580003 LRIG3Q6UXM1 1119 aa7.09□□□□□ -1.27
SS18-214ENST00000580003 ARFGAP1Q8N6T3 406 aa7.09□□□□□ -1.27
SS18-214ENST00000580003 SCAMP5Q8TAC9 235 aa7.09□□□□□ -1.27
SS18-214ENST00000580003 MPLKIPQ8TAP9 179 aa7.09□□□□□ -1.27
SS18-214ENST00000580003 WIPF2Q8TF74 440 aaPredicted RBP7.09□□□□□ -1.27
SS18-214ENST00000580003 IGFBPL1Q8WX77 278 aa7.09□□□□□ -1.27
SS18-214ENST00000580003 SORBS1Q9BX66 1292 aaKnown RBP7.09□□□□□ -1.27
SS18-214ENST00000580003 OSBPL5Q9H0X9 879 aaPredicted RBP7.09□□□□□ -1.27
SS18-214ENST00000580003 MAGEH1Q9H213 219 aa7.09□□□□□ -1.27
SS18-214ENST00000580003 MTPAPQ9NVV4 582 aaKnown RBP eCLIP7.09□□□□□ -1.27
SS18-214ENST00000580003 NDUFAF4Q9P032 175 aa7.09□□□□□ -1.27
SS18-214ENST00000580003 ZSCAN21Q9Y5A6 473 aaPredicted RBP7.09□□□□□ -1.27
SS18-214ENST00000580003 COPG1Q9Y678 874 aaKnown RBP7.09□□□□□ -1.27
SS18-214ENST00000580003 hCG_1642624A0A1W2PR95 340 aa7.08□□□□□ -1.28
SS18-214ENST00000580003 LDHAP00338 332 aaKnown RBP7.08□□□□□ -1.28
SS18-214ENST00000580003 RCAN1P53805 252 aa7.08□□□□□ -1.28
SS18-214ENST00000580003 LIN54Q6MZP7 749 aa7.08□□□□□ -1.28
SS18-214ENST00000580003 NRACQ8N912 160 aa7.08□□□□□ -1.28
SS18-214ENST00000580003 SLC44A5Q8NCS7 719 aa7.08□□□□□ -1.28
SS18-214ENST00000580003 CLEC4CQ8WTT0 213 aa7.08□□□□□ -1.28
SS18-214ENST00000580003 ZNF48Q96MX3 618 aaPredicted RBP7.08□□□□□ -1.28
SS18-214ENST00000580003 PIMREGQ9BSJ6 248 aa7.08□□□□□ -1.28
SS18-214ENST00000580003 FOXP1Q9H334 677 aaPredicted RBP7.08□□□□□ -1.28
SS18-214ENST00000580003 BAG5Q9UL15 447 aa7.08□□□□□ -1.28
SS18-214ENST00000580003 PCDHA10Q9Y5I2 948 aa7.08□□□□□ -1.28
SS18-214ENST00000580003 LMTK3Q96Q04 1460 aa7.08□□□□□ -1.28
SS18-214ENST00000580003 AGAP5A6NIR3 686 aa7.07□□□□□ -1.28
SS18-214ENST00000580003 PEX14O75381 377 aa7.07□□□□□ -1.28
SS18-214ENST00000580003 NFATC1O95644 943 aa7.07□□□□□ -1.28
SS18-214ENST00000580003 SERPINA4P29622 427 aa7.07□□□□□ -1.28
SS18-214ENST00000580003 CIITAP33076 1130 aa7.07□□□□□ -1.28
SS18-214ENST00000580003 CHKAP35790 457 aa7.07□□□□□ -1.28
SS18-214ENST00000580003 PNLIPRP1P54315 467 aa7.07□□□□□ -1.28
SS18-214ENST00000580003 SRSF1Q07955 248 aaKnown RBP eCLIP7.07□□□□□ -1.28
SS18-214ENST00000580003 PGM5Q15124 567 aa7.07□□□□□ -1.28
SS18-214ENST00000580003 DLGAP5Q15398 846 aa7.07□□□□□ -1.28
SS18-214ENST00000580003 MIDNQ504T8 468 aa7.07□□□□□ -1.28
SS18-214ENST00000580003 C10orf76Q5T2E6 689 aa7.07□□□□□ -1.28
SS18-214ENST00000580003 TTC22Q5TAA0 569 aa7.07□□□□□ -1.28
SS18-214ENST00000580003 ISM2Q6H9L7 571 aa7.07□□□□□ -1.28
SS18-214ENST00000580003 TANGO2Q6ICL3 276 aa7.07□□□□□ -1.28
SS18-214ENST00000580003 PAQR4Q8N4S7 273 aaPredicted RBP7.07□□□□□ -1.28
SS18-214ENST00000580003 STT3BQ8TCJ2 826 aa7.07□□□□□ -1.28
SS18-214ENST00000580003 OTUD7AQ8TE49 926 aaPredicted RBP7.07□□□□□ -1.28
SS18-214ENST00000580003 ADAD1Q96M93 576 aaKnown RBP7.07□□□□□ -1.28
SS18-214ENST00000580003 TRAPPC9Q96Q05 1148 aa7.07□□□□□ -1.28
SS18-214ENST00000580003 PAGR1Q9BTK6 254 aa7.07□□□□□ -1.28
SS18-214ENST00000580003 POT1Q9NUX5 634 aa7.07□□□□□ -1.28
SS18-214ENST00000580003 GRHPRQ9UBQ7 328 aa7.07□□□□□ -1.28
SS18-214ENST00000580003 AGO2Q9UKV8 859 aaKnown RBP7.07□□□□□ -1.28
SS18-214ENST00000580003 TNFSF13BQ9Y275 285 aa7.07□□□□□ -1.28
SS18-214ENST00000580003 TRBV5-3A0A0A0MS03 114 aa7.06□□□□□ -1.28
SS18-214ENST00000580003 HMX3A6NHT5 357 aa7.06□□□□□ -1.28
SS18-214ENST00000580003 IGKV2-30P06310 120 aa7.06□□□□□ -1.28
SS18-214ENST00000580003 GPR162Q16538 588 aa7.06□□□□□ -1.28
SS18-214ENST00000580003 GALNTL6Q49A17 601 aa7.06□□□□□ -1.28
SS18-214ENST00000580003 ERAP2Q6P179 960 aa7.06□□□□□ -1.28
SS18-214ENST00000580003 CYB5R4Q7L1T6 521 aa7.06□□□□□ -1.28
SS18-214ENST00000580003 RRAGAQ7L523 313 aa7.06□□□□□ -1.28
SS18-214ENST00000580003 PIP4P1Q86T03 277 aa7.06□□□□□ -1.28
SS18-214ENST00000580003 RUBCNQ92622 972 aa7.06□□□□□ -1.28
SS18-214ENST00000580003 ATP2A3Q93084 1043 aa7.06□□□□□ -1.28
SS18-214ENST00000580003 UTS2RQ9UKP6 389 aa7.06□□□□□ -1.28
SS18-214ENST00000580003 TTBK1Q5TCY1 1321 aaPredicted RBP7.05□□□□□ -1.28
SS18-214ENST00000580003 LY6G6EA0A0G2JKS1 128 aa7.05□□□□□ -1.28
SS18-214ENST00000580003 KIR2DS5A0A0G2JLQ3 304 aa7.05□□□□□ -1.28
SS18-214ENST00000580003 KIR2DS3K7RE56 304 aa7.05□□□□□ -1.28
SS18-214ENST00000580003 TWIST1Q15672 202 aa7.05□□□□□ -1.28
SS18-214ENST00000580003 TIGD6Q17RP2 521 aa7.05□□□□□ -1.28
SS18-214ENST00000580003 EPHA10Q5JZY3 1008 aa7.05□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms