RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 ARID5BQ14865 1188 aa21.86■■□□□ 1.09
VPS53-216ENST00000574029 HNRNPA1L2Q32P51 320 aaKnown RBP21.86■■□□□ 1.09
VPS53-216ENST00000574029 LAYNQ6UX15 382 aa21.86■■□□□ 1.09
VPS53-216ENST00000574029 KDM1BQ8NB78 822 aa21.86■■□□□ 1.09
VPS53-216ENST00000574029 DQX1Q8TE96 717 aaKnown RBP21.86■■□□□ 1.09
VPS53-216ENST00000574029 SLC39A13Q96H72 371 aa21.86■■□□□ 1.09
VPS53-216ENST00000574029 MRGPRX3Q96LB0 322 aa21.86■■□□□ 1.09
VPS53-216ENST00000574029 TIGD1Q96MW7 591 aa21.86■■□□□ 1.09
VPS53-216ENST00000574029 SERPINB11Q96P15 392 aa21.86■■□□□ 1.09
VPS53-216ENST00000574029 MIS12Q9H081 205 aa21.86■■□□□ 1.09
VPS53-216ENST00000574029 PABPC3Q9H361 631 aaKnown RBP21.86■■□□□ 1.09
VPS53-216ENST00000574029 NCKAP1Q9Y2A7 1128 aa21.86■■□□□ 1.09
VPS53-216ENST00000574029 TLR6Q9Y2C9 796 aa21.86■■□□□ 1.09
VPS53-216ENST00000574029 KCNK3O14649 394 aa21.85■■□□□ 1.09
VPS53-216ENST00000574029 SIN3BO75182 1162 aa21.85■■□□□ 1.09
VPS53-216ENST00000574029 CSKP41240 450 aa21.85■■□□□ 1.09
VPS53-216ENST00000574029 CTSKP43235 329 aa21.85■■□□□ 1.09
VPS53-216ENST00000574029 ST8SIA6P61647 398 aa21.85■■□□□ 1.09
VPS53-216ENST00000574029 RPS24P62847 133 aaKnown RBP21.85■■□□□ 1.09
VPS53-216ENST00000574029 COL9A2Q14055 689 aaPredicted RBP21.85■■□□□ 1.09
VPS53-216ENST00000574029 MS4A13Q5J8X5 152 aa21.85■■□□□ 1.09
VPS53-216ENST00000574029 KCNT1Q5JUK3 1230 aa21.85■■□□□ 1.09
VPS53-216ENST00000574029 KIAA0895LQ68EN5 471 aa21.85■■□□□ 1.09
VPS53-216ENST00000574029 NYNRINQ9P2P1 1898 aaKnown RBP21.85■■□□□ 1.09
VPS53-216ENST00000574029 TYW5A2RUC4 315 aaKnown RBP21.84■■□□□ 1.09
VPS53-216ENST00000574029 GOLGA6L4A6NEF3 574 aa21.84■■□□□ 1.09
VPS53-216ENST00000574029 H0Y8X5 98 aa21.84■■□□□ 1.09
VPS53-216ENST00000574029 PAPSS1O43252 624 aaPredicted RBP21.84■■□□□ 1.09
VPS53-216ENST00000574029 CD44P16070 742 aaKnown RBP21.84■■□□□ 1.09
VPS53-216ENST00000574029 GRK6P43250 576 aa21.84■■□□□ 1.09
VPS53-216ENST00000574029 CCT8P50990 548 aa21.84■■□□□ 1.09
VPS53-216ENST00000574029 GCNT1Q02742 428 aa21.84■■□□□ 1.09
VPS53-216ENST00000574029 CETN1Q12798 172 aa21.84■■□□□ 1.09
VPS53-216ENST00000574029 STIM1Q13586 685 aa21.84■■□□□ 1.09
VPS53-216ENST00000574029 CCDC40Q4G0X9 1142 aa21.84■■□□□ 1.09
VPS53-216ENST00000574029 FSCBQ5H9T9 825 aa21.84■■□□□ 1.09
VPS53-216ENST00000574029 ARHGEF19Q8IW93 802 aa21.84■■□□□ 1.09
VPS53-216ENST00000574029 SCUBE3Q8IX30 993 aa21.84■■□□□ 1.09
VPS53-216ENST00000574029 CARNMT1Q8N4J0 409 aa21.84■■□□□ 1.09
VPS53-216ENST00000574029 MDM1Q8TC05 714 aa21.84■■□□□ 1.09
VPS53-216ENST00000574029 FBXL12Q9NXK8 326 aa21.84■■□□□ 1.09
VPS53-216ENST00000574029 HOOK1Q9UJC3 728 aaKnown RBP21.84■■□□□ 1.09
VPS53-216ENST00000574029 NAALADL1Q9UQQ1 740 aa21.84■■□□□ 1.09
VPS53-216ENST00000574029 TARSL2A2RTX5 802 aaKnown RBP21.83■■□□□ 1.09
VPS53-216ENST00000574029 C10orf142B7Z368 130 aa21.83■■□□□ 1.09
VPS53-216ENST00000574029 TNFSF14O43557 240 aa21.83■■□□□ 1.09
VPS53-216ENST00000574029 RNASEH1O60930 286 aaKnown RBP21.83■■□□□ 1.09
VPS53-216ENST00000574029 SRPRAP08240 638 aaKnown RBP21.83■■□□□ 1.09
VPS53-216ENST00000574029 PPP1R2P41236 205 aa21.83■■□□□ 1.09
VPS53-216ENST00000574029 GPD2P43304 727 aa21.83■■□□□ 1.09
VPS53-216ENST00000574029 GALCP54803 685 aa21.83■■□□□ 1.09
VPS53-216ENST00000574029 RACK1P63244 317 aaKnown RBP21.83■■□□□ 1.09
VPS53-216ENST00000574029 SFSWAPQ12872 951 aaKnown RBP21.83■■□□□ 1.09
VPS53-216ENST00000574029 CST6Q15828 149 aa21.83■■□□□ 1.09
VPS53-216ENST00000574029 PITRM1Q5JRX3 1037 aa21.83■■□□□ 1.09
VPS53-216ENST00000574029 C9orf64Q5T6V5 341 aa21.83■■□□□ 1.09
VPS53-216ENST00000574029 ISM2Q6H9L7 571 aa21.83■■□□□ 1.09
VPS53-216ENST00000574029 TTI2Q6NXR4 508 aa21.83■■□□□ 1.09
VPS53-216ENST00000574029 BEND5Q7L4P6 421 aa21.83■■□□□ 1.09
VPS53-216ENST00000574029 RRAGAQ7L523 313 aa21.83■■□□□ 1.09
VPS53-216ENST00000574029 DHX40Q8IX18 779 aaKnown RBP21.83■■□□□ 1.09
VPS53-216ENST00000574029 NUCKS1Q9H1E3 243 aaKnown RBP21.83■■□□□ 1.09
VPS53-216ENST00000574029 DKK4Q9UBT3 224 aa21.83■■□□□ 1.09
VPS53-216ENST00000574029 SERGEFQ9UGK8 458 aa21.83■■□□□ 1.09
VPS53-216ENST00000574029 ADAMTS1Q9UHI8 967 aa21.83■■□□□ 1.09
VPS53-216ENST00000574029 CNTN6Q9UQ52 1028 aa21.83■■□□□ 1.09
VPS53-216ENST00000574029 ERVW-1Q9UQF0 538 aa21.83■■□□□ 1.09
VPS53-216ENST00000574029 FREM2Q5SZK8 3169 aa21.83■■□□□ 1.09
VPS53-216ENST00000574029 A0A1W2PPC4 97 aa21.82■■□□□ 1.08
VPS53-216ENST00000574029 VILLO15195 856 aa21.82■■□□□ 1.08
VPS53-216ENST00000574029 SART1O43290 800 aaKnown RBP21.82■■□□□ 1.08
VPS53-216ENST00000574029 DFNA5O60443 496 aa21.82■■□□□ 1.08
VPS53-216ENST00000574029 LUC7L3O95232 432 aaKnown RBP21.82■■□□□ 1.08
VPS53-216ENST00000574029 CDH18Q13634 790 aa21.82■■□□□ 1.08
VPS53-216ENST00000574029 DCAF6Q58WW2 860 aa21.82■■□□□ 1.08
VPS53-216ENST00000574029 FOXR2Q6PJQ5 311 aa21.82■■□□□ 1.08
VPS53-216ENST00000574029 MMS22LQ6ZRQ5 1243 aa21.82■■□□□ 1.08
VPS53-216ENST00000574029 ADAT2Q7Z6V5 191 aaKnown RBP21.82■■□□□ 1.08
VPS53-216ENST00000574029 CCDC117Q8IWD4 279 aaPredicted RBP21.82■■□□□ 1.08
VPS53-216ENST00000574029 ELOA2Q8IYF1 753 aaPredicted RBP21.82■■□□□ 1.08
VPS53-216ENST00000574029 CFAP52Q8N1V2 620 aa21.82■■□□□ 1.08
VPS53-216ENST00000574029 GALNT15Q8N3T1 639 aa21.82■■□□□ 1.08
VPS53-216ENST00000574029 EHBP1Q8NDI1 1231 aa21.82■■□□□ 1.08
VPS53-216ENST00000574029 ADAM32Q8TC27 787 aa21.82■■□□□ 1.08
VPS53-216ENST00000574029 GANCQ8TET4 914 aa21.82■■□□□ 1.08
VPS53-216ENST00000574029 NEUROG2Q9H2A3 272 aa21.82■■□□□ 1.08
VPS53-216ENST00000574029 MAN1B1Q9UKM7 699 aa21.82■■□□□ 1.08
VPS53-216ENST00000574029 ITIH6Q6UXX5 1313 aa21.81■■□□□ 1.08
VPS53-216ENST00000574029 COL5A1P20908 1838 aaPredicted RBP21.81■■□□□ 1.08
VPS53-216ENST00000574029 GOLGA8CPA6NN73 597 aa21.81■■□□□ 1.08
VPS53-216ENST00000574029 MID1O15344 667 aa21.81■■□□□ 1.08
VPS53-216ENST00000574029 CTSOP43234 321 aaPredicted RBP21.81■■□□□ 1.08
VPS53-216ENST00000574029 ACADSBP45954 432 aa21.81■■□□□ 1.08
VPS53-216ENST00000574029 SYPL2Q5VXT5 272 aa21.81■■□□□ 1.08
VPS53-216ENST00000574029 NCEH1Q6PIU2 408 aa21.81■■□□□ 1.08
VPS53-216ENST00000574029 C19orf48Q6RUI8 117 aa21.81■■□□□ 1.08
VPS53-216ENST00000574029 TAC4Q86UU9 113 aa21.81■■□□□ 1.08
VPS53-216ENST00000574029 KREMEN1Q96MU8 473 aa21.81■■□□□ 1.08
VPS53-216ENST00000574029 SLC6A18Q96N87 628 aa21.81■■□□□ 1.08
VPS53-216ENST00000574029 ACE2Q9BYF1 805 aaPredicted RBP21.81■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms