RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 PDAP1Q13442 181 aaKnown RBP9.48□□□□□ -0.89
VPS39-205ENST00000562258 GRM2Q14416 872 aa9.48□□□□□ -0.89
VPS39-205ENST00000562258 ACOX1Q15067 660 aa9.48□□□□□ -0.89
VPS39-205ENST00000562258 GLE1Q53GS7 698 aaKnown RBP9.48□□□□□ -0.89
VPS39-205ENST00000562258 PLEKHG4Q58EX7 1191 aa9.48□□□□□ -0.89
VPS39-205ENST00000562258 TBC1D1Q86TI0 1168 aaPredicted RBP9.48□□□□□ -0.89
VPS39-205ENST00000562258 XYLT1Q86Y38 959 aa9.48□□□□□ -0.89
VPS39-205ENST00000562258 OGDHLQ9ULD0 1010 aa9.48□□□□□ -0.89
VPS39-205ENST00000562258 PCDHB9Q9Y5E1 797 aa9.48□□□□□ -0.89
VPS39-205ENST00000562258 SSC5DA1L4H1 1573 aa9.47□□□□□ -0.89
VPS39-205ENST00000562258 HAS3O00219 553 aa9.47□□□□□ -0.89
VPS39-205ENST00000562258 IGSF6O95976 241 aa9.47□□□□□ -0.89
VPS39-205ENST00000562258 ADH1CP00326 375 aa9.47□□□□□ -0.89
VPS39-205ENST00000562258 CST5P28325 142 aaPredicted RBP9.47□□□□□ -0.89
VPS39-205ENST00000562258 MROH9Q5TGP6 573 aa9.47□□□□□ -0.89
VPS39-205ENST00000562258 FBXO38Q6PIJ6 1188 aa9.47□□□□□ -0.89
VPS39-205ENST00000562258 HJURPQ8NCD3 748 aaPredicted RBP9.47□□□□□ -0.89
VPS39-205ENST00000562258 CRTAC1Q9NQ79 661 aa9.47□□□□□ -0.89
VPS39-205ENST00000562258 SDAD1Q9NVU7 687 aaKnown RBP eCLIP9.47□□□□□ -0.89
VPS39-205ENST00000562258 SEPT3Q9UH03 358 aa9.47□□□□□ -0.89
VPS39-205ENST00000562258 INSL5Q9Y5Q6 135 aa9.47□□□□□ -0.89
VPS39-205ENST00000562258 CABIN1Q9Y6J0 2220 aa9.47□□□□□ -0.89
VPS39-205ENST00000562258 SBF2Q86WG5 1849 aa9.47□□□□□ -0.89
VPS39-205ENST00000562258 ZBTB42B2RXF5 422 aa9.47□□□□□ -0.89
VPS39-205ENST00000562258 EBAG9O00559 213 aa9.47□□□□□ -0.89
VPS39-205ENST00000562258 ETS1P14921 441 aa9.47□□□□□ -0.89
VPS39-205ENST00000562258 GPD2P43304 727 aa9.47□□□□□ -0.89
VPS39-205ENST00000562258 GNGT1P63211 74 aa9.47□□□□□ -0.89
VPS39-205ENST00000562258 SEMG2Q02383 582 aa9.47□□□□□ -0.89
VPS39-205ENST00000562258 GHRHRQ02643 423 aa9.47□□□□□ -0.89
VPS39-205ENST00000562258 NNTQ13423 1086 aa9.47□□□□□ -0.89
VPS39-205ENST00000562258 TEAD2Q15562 447 aa9.47□□□□□ -0.89
VPS39-205ENST00000562258 TPGS2Q68CL5 300 aa9.47□□□□□ -0.89
VPS39-205ENST00000562258 EMBQ6PCB8 327 aa9.47□□□□□ -0.89
VPS39-205ENST00000562258 FAM47EQ6ZV65 393 aa9.47□□□□□ -0.89
VPS39-205ENST00000562258 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.47□□□□□ -0.89
VPS39-205ENST00000562258 TTC9BQ8N6N2 239 aa9.47□□□□□ -0.89
VPS39-205ENST00000562258 FBXO25Q8TCJ0 367 aa9.47□□□□□ -0.89
VPS39-205ENST00000562258 STAMBPL1Q96FJ0 436 aa9.47□□□□□ -0.89
VPS39-205ENST00000562258 FUBP3Q96I24 572 aaKnown RBP eCLIP9.47□□□□□ -0.89
VPS39-205ENST00000562258 CABS1Q96KC9 395 aa9.47□□□□□ -0.89
VPS39-205ENST00000562258 FIZ1Q96SL8 496 aa9.47□□□□□ -0.89
VPS39-205ENST00000562258 TRIM54Q9BYV2 358 aa9.47□□□□□ -0.89
VPS39-205ENST00000562258 ZDHHC4Q9NPG8 344 aa9.47□□□□□ -0.89
VPS39-205ENST00000562258 AASDHPPTQ9NRN7 309 aa9.47□□□□□ -0.89
VPS39-205ENST00000562258 UTP6Q9NYH9 597 aaKnown RBP9.47□□□□□ -0.89
VPS39-205ENST00000562258 SLC39A10Q9ULF5 831 aa9.47□□□□□ -0.89
VPS39-205ENST00000562258 SHANK3Q9BYB0 1731 aa9.47□□□□□ -0.89
VPS39-205ENST00000562258 MYH4Q9Y623 1939 aa9.47□□□□□ -0.89
VPS39-205ENST00000562258 TMEM191CA6NGB0 347 aa9.47□□□□□ -0.89
VPS39-205ENST00000562258 RNF40O75150 1001 aa9.47□□□□□ -0.89
VPS39-205ENST00000562258 CTPS1P17812 591 aa9.47□□□□□ -0.89
VPS39-205ENST00000562258 ITIH2P19823 946 aa9.47□□□□□ -0.89
VPS39-205ENST00000562258 CRADDP78560 199 aa9.47□□□□□ -0.89
VPS39-205ENST00000562258 CAV1Q03135 178 aa9.47□□□□□ -0.89
VPS39-205ENST00000562258 ASPHQ12797 758 aa9.47□□□□□ -0.89
VPS39-205ENST00000562258 LRRC14Q15048 493 aa9.47□□□□□ -0.89
VPS39-205ENST00000562258 LONRF1Q17RB8 773 aa9.47□□□□□ -0.89
VPS39-205ENST00000562258 MEI1Q5TIA1 1274 aa9.47□□□□□ -0.89
VPS39-205ENST00000562258 RFX8Q6ZV50 586 aa9.47□□□□□ -0.89
VPS39-205ENST00000562258 SZRD1Q7Z422 152 aa9.47□□□□□ -0.89
VPS39-205ENST00000562258 ARID3BQ8IVW6 561 aaPredicted RBP9.47□□□□□ -0.89
VPS39-205ENST00000562258 TRIM48Q8IWZ4 208 aa9.47□□□□□ -0.89
VPS39-205ENST00000562258 ELMO2Q96JJ3 720 aa9.47□□□□□ -0.89
VPS39-205ENST00000562258 ZFYVE19Q96K21 471 aa9.47□□□□□ -0.89
VPS39-205ENST00000562258 ADGRE3Q9BY15 652 aa9.47□□□□□ -0.89
VPS39-205ENST00000562258 LHX5Q9H2C1 402 aa9.47□□□□□ -0.89
VPS39-205ENST00000562258 NCKAP1Q9Y2A7 1128 aa9.47□□□□□ -0.89
VPS39-205ENST00000562258 AAR2Q9Y312 384 aaKnown RBP9.47□□□□□ -0.89
VPS39-205ENST00000562258 PCDHA3Q9Y5H8 950 aa9.47□□□□□ -0.89
VPS39-205ENST00000562258 LY75O60449 1722 aa9.46□□□□□ -0.89
VPS39-205ENST00000562258 MAGEA4P43358 317 aa9.46□□□□□ -0.89
VPS39-205ENST00000562258 ARL4DP49703 201 aa9.46□□□□□ -0.89
VPS39-205ENST00000562258 GEMIN4P57678 1058 aaKnown RBP9.46□□□□□ -0.89
VPS39-205ENST00000562258 DSG4Q86SJ6 1040 aa9.46□□□□□ -0.89
VPS39-205ENST00000562258 LZTR1Q8N653 840 aa9.46□□□□□ -0.89
VPS39-205ENST00000562258 OR10T2Q8NGX3 314 aa9.46□□□□□ -0.89
VPS39-205ENST00000562258 PIK3R5Q8WYR1 880 aa9.46□□□□□ -0.89
VPS39-205ENST00000562258 TOP1MTQ969P6 601 aa9.46□□□□□ -0.89
VPS39-205ENST00000562258 BTN2A3PQ96KV6 586 aa9.46□□□□□ -0.89
VPS39-205ENST00000562258 TMEM175Q9BSA9 504 aa9.46□□□□□ -0.89
VPS39-205ENST00000562258 EBF3Q9H4W6 596 aa9.46□□□□□ -0.89
VPS39-205ENST00000562258 SQORQ9Y6N5 450 aa9.46□□□□□ -0.89
VPS39-205ENST00000562258 MYH9P35579 1960 aaKnown RBP9.46□□□□□ -0.89
VPS39-205ENST00000562258 TBC1D3DA0A087WVF3 549 aa9.46□□□□□ -0.89
VPS39-205ENST00000562258 TBC1D3IA0A087WXS9 549 aa9.46□□□□□ -0.89
VPS39-205ENST00000562258 TBC1D3EA0A087X179 549 aa9.46□□□□□ -0.89
VPS39-205ENST00000562258 TBC1D3KA0A087X1G2 549 aa9.46□□□□□ -0.89
VPS39-205ENST00000562258 TBC1D3FA6NER0 549 aaPredicted RBP9.46□□□□□ -0.89
VPS39-205ENST00000562258 TBC1D3LB9A6J9 549 aa9.46□□□□□ -0.89
VPS39-205ENST00000562258 LRIG2O94898 1065 aa9.46□□□□□ -0.89
VPS39-205ENST00000562258 HIST1H2AGP0C0S8 130 aaPredicted RBP9.46□□□□□ -0.89
VPS39-205ENST00000562258 TBC1D3HP0C7X1 549 aa9.46□□□□□ -0.89
VPS39-205ENST00000562258 TROVE2P10155 538 aaKnown RBP eCLIP9.46□□□□□ -0.89
VPS39-205ENST00000562258 HIST1H2ADP20671 130 aa9.46□□□□□ -0.89
VPS39-205ENST00000562258 CD86P42081 329 aa9.46□□□□□ -0.89
VPS39-205ENST00000562258 THOP1P52888 689 aa9.46□□□□□ -0.89
VPS39-205ENST00000562258 ANKRD20A8PQ5CZ79 823 aa9.46□□□□□ -0.89
VPS39-205ENST00000562258 TBC1D3GQ6DHY5 549 aa9.46□□□□□ -0.89
VPS39-205ENST00000562258 TBC1D3CQ6IPX1 549 aa9.46□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms