RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 SLC6A4P31645 630 aa9.51□□□□□ -0.89
HDDC3-204ENST00000559834 PPP1R2P41236 205 aa9.51□□□□□ -0.89
HDDC3-204ENST00000559834 CSKP41240 450 aa9.51□□□□□ -0.89
HDDC3-204ENST00000559834 ACADSBP45954 432 aa9.51□□□□□ -0.89
HDDC3-204ENST00000559834 FMO5P49326 533 aa9.51□□□□□ -0.89
HDDC3-204ENST00000559834 SGSHP51688 502 aa9.51□□□□□ -0.89
HDDC3-204ENST00000559834 GALCP54803 685 aa9.51□□□□□ -0.89
HDDC3-204ENST00000559834 NUCB2P80303 420 aa9.51□□□□□ -0.89
HDDC3-204ENST00000559834 CYP4F3Q08477 520 aa9.51□□□□□ -0.89
HDDC3-204ENST00000559834 NNTQ13423 1086 aa9.51□□□□□ -0.89
HDDC3-204ENST00000559834 PNOCQ13519 176 aa9.51□□□□□ -0.89
HDDC3-204ENST00000559834 CDH18Q13634 790 aa9.51□□□□□ -0.89
HDDC3-204ENST00000559834 ARID5BQ14865 1188 aa9.51□□□□□ -0.89
HDDC3-204ENST00000559834 SMAD1Q15797 465 aaKnown RBP9.51□□□□□ -0.89
HDDC3-204ENST00000559834 CST6Q15828 149 aa9.51□□□□□ -0.89
HDDC3-204ENST00000559834 CCDC157Q569K6 752 aa9.51□□□□□ -0.89
HDDC3-204ENST00000559834 SLC45A4Q5BKX6 768 aa9.51□□□□□ -0.89
HDDC3-204ENST00000559834 FAM133BQ5BKY9 247 aaKnown RBP9.51□□□□□ -0.89
HDDC3-204ENST00000559834 RNF219Q5W0B1 726 aaPredicted RBP9.51□□□□□ -0.89
HDDC3-204ENST00000559834 TMPRSS12Q86WS5 348 aa9.51□□□□□ -0.89
HDDC3-204ENST00000559834 ZC3H3Q8IXZ2 948 aaKnown RBP9.51□□□□□ -0.89
HDDC3-204ENST00000559834 UBR7Q8N806 425 aa9.51□□□□□ -0.89
HDDC3-204ENST00000559834 TFAP2BQ92481 460 aa9.51□□□□□ -0.89
HDDC3-204ENST00000559834 SLC35C1Q96A29 364 aa9.51□□□□□ -0.89
HDDC3-204ENST00000559834 SERPINB11Q96P15 392 aa9.51□□□□□ -0.89
HDDC3-204ENST00000559834 MIS12Q9H081 205 aa9.51□□□□□ -0.89
HDDC3-204ENST00000559834 NEUROG2Q9H2A3 272 aa9.51□□□□□ -0.89
HDDC3-204ENST00000559834 GOLPH3LQ9H4A5 285 aa9.51□□□□□ -0.89
HDDC3-204ENST00000559834 AASDHPPTQ9NRN7 309 aa9.51□□□□□ -0.89
HDDC3-204ENST00000559834 SLC12A6Q9UHW9 1150 aa9.51□□□□□ -0.89
HDDC3-204ENST00000559834 FZD4Q9ULV1 537 aa9.51□□□□□ -0.89
HDDC3-204ENST00000559834 TLR6Q9Y2C9 796 aa9.51□□□□□ -0.89
HDDC3-204ENST00000559834 BTBD3Q9Y2F9 522 aa9.51□□□□□ -0.89
HDDC3-204ENST00000559834 RAXQ9Y2V3 346 aa9.51□□□□□ -0.89
HDDC3-204ENST00000559834 CEP83Q9Y592 693 aa9.51□□□□□ -0.89
HDDC3-204ENST00000559834 PCDHGA1Q9Y5H4 931 aa9.51□□□□□ -0.89
HDDC3-204ENST00000559834 GOLGA4Q13439 2230 aaKnown RBP9.51□□□□□ -0.89
HDDC3-204ENST00000559834 NUMA1Q14980 2115 aa9.5□□□□□ -0.89
HDDC3-204ENST00000559834 EDDM13A0A1B0GTR0 161 aa9.5□□□□□ -0.89
HDDC3-204ENST00000559834 A0A1W2PP55 124 aa9.5□□□□□ -0.89
HDDC3-204ENST00000559834 PIK3R2O00459 728 aa9.5□□□□□ -0.89
HDDC3-204ENST00000559834 CAPN9O14815 690 aa9.5□□□□□ -0.89
HDDC3-204ENST00000559834 PSMA7O14818 248 aa9.5□□□□□ -0.89
HDDC3-204ENST00000559834 P4HA2O15460 535 aa9.5□□□□□ -0.89
HDDC3-204ENST00000559834 YKT6O15498 198 aa9.5□□□□□ -0.89
HDDC3-204ENST00000559834 SIN3BO75182 1162 aa9.5□□□□□ -0.89
HDDC3-204ENST00000559834 RNASEH2AO75792 299 aaKnown RBP9.5□□□□□ -0.89
HDDC3-204ENST00000559834 GABBR2O75899 941 aa9.5□□□□□ -0.89
HDDC3-204ENST00000559834 LDOC1O95751 146 aaPredicted RBP9.5□□□□□ -0.89
HDDC3-204ENST00000559834 APOEP02649 317 aa9.5□□□□□ -0.89
HDDC3-204ENST00000559834 IGHV4-34P06331 123 aa9.5□□□□□ -0.89
HDDC3-204ENST00000559834 ITGAVP06756 1048 aa9.5□□□□□ -0.89
HDDC3-204ENST00000559834 JUPP14923 745 aa9.5□□□□□ -0.89
HDDC3-204ENST00000559834 ABCB4P21439 1286 aa9.5□□□□□ -0.89
HDDC3-204ENST00000559834 C5AR1P21730 350 aa9.5□□□□□ -0.89
HDDC3-204ENST00000559834 CD38P28907 300 aa9.5□□□□□ -0.89
HDDC3-204ENST00000559834 SLC8A1P32418 973 aa9.5□□□□□ -0.89
HDDC3-204ENST00000559834 HNF1BP35680 557 aa9.5□□□□□ -0.89
HDDC3-204ENST00000559834 ARRB1P49407 418 aaPredicted RBP9.5□□□□□ -0.89
HDDC3-204ENST00000559834 CCR5P51681 352 aa9.5□□□□□ -0.89
HDDC3-204ENST00000559834 OXCT1P55809 520 aa9.5□□□□□ -0.89
HDDC3-204ENST00000559834 RPS24P62847 133 aaKnown RBP9.5□□□□□ -0.89
HDDC3-204ENST00000559834 ECT2LQ008S8 904 aa9.5□□□□□ -0.89
HDDC3-204ENST00000559834 CCDC40Q4G0X9 1142 aa9.5□□□□□ -0.89
HDDC3-204ENST00000559834 MS4A13Q5J8X5 152 aa9.5□□□□□ -0.89
HDDC3-204ENST00000559834 PITRM1Q5JRX3 1037 aa9.5□□□□□ -0.89
HDDC3-204ENST00000559834 C9orf64Q5T6V5 341 aa9.5□□□□□ -0.89
HDDC3-204ENST00000559834 NCEH1Q6PIU2 408 aa9.5□□□□□ -0.89
HDDC3-204ENST00000559834 BEND5Q7L4P6 421 aa9.5□□□□□ -0.89
HDDC3-204ENST00000559834 MMAAQ8IVH4 418 aaKnown RBP9.5□□□□□ -0.89
HDDC3-204ENST00000559834 DHX40Q8IX18 779 aaKnown RBP9.5□□□□□ -0.89
HDDC3-204ENST00000559834 SCUBE3Q8IX30 993 aa9.5□□□□□ -0.89
HDDC3-204ENST00000559834 PPM1KQ8N3J5 372 aa9.5□□□□□ -0.89
HDDC3-204ENST00000559834 OR2T34Q8NGX1 318 aa9.5□□□□□ -0.89
HDDC3-204ENST00000559834 WFDC5Q8TCV5 224 aa9.5□□□□□ -0.89
HDDC3-204ENST00000559834 SMARCE1Q969G3 411 aa9.5□□□□□ -0.89
HDDC3-204ENST00000559834 FAM149B1Q96BN6 582 aa9.5□□□□□ -0.89
HDDC3-204ENST00000559834 DHTKD1Q96HY7 919 aaPredicted RBP9.5□□□□□ -0.89
HDDC3-204ENST00000559834 LMLNQ96KR4 655 aa9.5□□□□□ -0.89
HDDC3-204ENST00000559834 CEP63Q96MT8 703 aa9.5□□□□□ -0.89
HDDC3-204ENST00000559834 PPP1R9BQ96SB3 815 aa9.5□□□□□ -0.89
HDDC3-204ENST00000559834 ELF4Q99607 663 aaPredicted RBP9.5□□□□□ -0.89
HDDC3-204ENST00000559834 ORAI3Q9BRQ5 295 aa9.5□□□□□ -0.89
HDDC3-204ENST00000559834 MTG2Q9H4K7 406 aa9.5□□□□□ -0.89
HDDC3-204ENST00000559834 GDF3Q9NR23 364 aa9.5□□□□□ -0.89
HDDC3-204ENST00000559834 TJP2Q9UDY2 1190 aa9.5□□□□□ -0.89
HDDC3-204ENST00000559834 ADAMTS1Q9UHI8 967 aa9.5□□□□□ -0.89
HDDC3-204ENST00000559834 ERVW-1Q9UQF0 538 aa9.5□□□□□ -0.89
HDDC3-204ENST00000559834 SLCO1B1Q9Y6L6 691 aa9.5□□□□□ -0.89
HDDC3-204ENST00000559834 ACACAQ13085 2346 aa9.5□□□□□ -0.89
HDDC3-204ENST00000559834 PLXNB3Q9ULL4 1909 aa9.5□□□□□ -0.89
HDDC3-204ENST00000559834 PKD1L2Q7Z442 2459 aa9.49□□□□□ -0.89
HDDC3-204ENST00000559834 ADAMTS20P59510 1910 aa9.49□□□□□ -0.89
HDDC3-204ENST00000559834 TBC1D3DA0A087WVF3 549 aa9.49□□□□□ -0.89
HDDC3-204ENST00000559834 TBC1D3IA0A087WXS9 549 aa9.49□□□□□ -0.89
HDDC3-204ENST00000559834 TBC1D3EA0A087X179 549 aa9.49□□□□□ -0.89
HDDC3-204ENST00000559834 TBC1D3KA0A087X1G2 549 aa9.49□□□□□ -0.89
HDDC3-204ENST00000559834 FAM149AA5PLN7 773 aa9.49□□□□□ -0.89
HDDC3-204ENST00000559834 TBC1D3FA6NER0 549 aaPredicted RBP9.49□□□□□ -0.89
HDDC3-204ENST00000559834 TBC1D3LB9A6J9 549 aa9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms