RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 EIF2DP41214 584 aaKnown RBP9.52□□□□□ -0.89
LDLR-210ENST00000559340 MAPKAPK2P49137 400 aa9.52□□□□□ -0.89
LDLR-210ENST00000559340 RWDD2BP57060 319 aa9.52□□□□□ -0.89
LDLR-210ENST00000559340 TAS2R40P59535 323 aa9.52□□□□□ -0.89
LDLR-210ENST00000559340 COPS2P61201 443 aa9.52□□□□□ -0.89
LDLR-210ENST00000559340 SLC25A11Q02978 314 aaKnown RBP9.52□□□□□ -0.89
LDLR-210ENST00000559340 PRKCQQ04759 706 aa9.52□□□□□ -0.89
LDLR-210ENST00000559340 ZNF177Q13360 481 aaPredicted RBP9.52□□□□□ -0.89
LDLR-210ENST00000559340 SLC12A1Q13621 1099 aa9.52□□□□□ -0.89
LDLR-210ENST00000559340 RPS6KA1Q15418 735 aa9.52□□□□□ -0.89
LDLR-210ENST00000559340 PPP6R3Q5H9R7 873 aaPredicted RBP9.52□□□□□ -0.89
LDLR-210ENST00000559340 ZNF569Q5MCW4 686 aa9.52□□□□□ -0.89
LDLR-210ENST00000559340 NADSYN1Q6IA69 706 aa9.52□□□□□ -0.89
LDLR-210ENST00000559340 RWDD4Q6NW29 188 aaKnown RBP9.52□□□□□ -0.89
LDLR-210ENST00000559340 RFWD3Q6PCD5 774 aa9.52□□□□□ -0.89
LDLR-210ENST00000559340 NT5DC3Q86UY8 548 aa9.52□□□□□ -0.89
LDLR-210ENST00000559340 TMEM25Q86YD3 366 aa9.52□□□□□ -0.89
LDLR-210ENST00000559340 KATNAL2Q8IYT4 538 aa9.52□□□□□ -0.89
LDLR-210ENST00000559340 LZTR1Q8N653 840 aa9.52□□□□□ -0.89
LDLR-210ENST00000559340 LRRC57Q8N9N7 239 aa9.52□□□□□ -0.89
LDLR-210ENST00000559340 EXD1Q8NHP7 514 aa9.52□□□□□ -0.89
LDLR-210ENST00000559340 ZFYVE19Q96K21 471 aa9.52□□□□□ -0.89
LDLR-210ENST00000559340 NELL2Q99435 816 aa9.52□□□□□ -0.89
LDLR-210ENST00000559340 HPS4Q9NQG7 708 aa9.52□□□□□ -0.89
LDLR-210ENST00000559340 STAU2Q9NUL3 570 aaKnown RBP eCLIP9.52□□□□□ -0.89
LDLR-210ENST00000559340 KIAA1522Q9P206 1035 aaPredicted RBP9.52□□□□□ -0.89
LDLR-210ENST00000559340 DEC1Q9P2X7 70 aa9.52□□□□□ -0.89
LDLR-210ENST00000559340 FBXL21Q9UKT6 434 aa9.52□□□□□ -0.89
LDLR-210ENST00000559340 PYCARDQ9ULZ3 195 aa9.52□□□□□ -0.89
LDLR-210ENST00000559340 ZKSCAN5Q9Y2L8 839 aa9.52□□□□□ -0.89
LDLR-210ENST00000559340 MRPS17Q9Y2R5 130 aaKnown RBP9.52□□□□□ -0.89
LDLR-210ENST00000559340 IGLV3-10A0A075B6K4 115 aa9.51□□□□□ -0.89
LDLR-210ENST00000559340 LRRD1A4D1F6 860 aa9.51□□□□□ -0.89
LDLR-210ENST00000559340 NEDD8-MDP1E9PL57 170 aa9.51□□□□□ -0.89
LDLR-210ENST00000559340 TRDMT1O14717 391 aaKnown RBP9.51□□□□□ -0.89
LDLR-210ENST00000559340 SCAMP3O14828 347 aaKnown RBP9.51□□□□□ -0.89
LDLR-210ENST00000559340 TIMM44O43615 452 aa9.51□□□□□ -0.89
LDLR-210ENST00000559340 LRIG2O94898 1065 aa9.51□□□□□ -0.89
LDLR-210ENST00000559340 LUC7L3O95232 432 aaKnown RBP9.51□□□□□ -0.89
LDLR-210ENST00000559340 PENKP01210 267 aaPredicted RBP9.51□□□□□ -0.89
LDLR-210ENST00000559340 KRT1P04264 644 aa9.51□□□□□ -0.89
LDLR-210ENST00000559340 APODP05090 189 aa9.51□□□□□ -0.89
LDLR-210ENST00000559340 CYP17A1P05093 508 aa9.51□□□□□ -0.89
LDLR-210ENST00000559340 KDELR1P24390 212 aa9.51□□□□□ -0.89
LDLR-210ENST00000559340 IL1R2P27930 398 aa9.51□□□□□ -0.89
LDLR-210ENST00000559340 EPHB2P29323 1055 aa9.51□□□□□ -0.89
LDLR-210ENST00000559340 GJA4P35212 333 aa9.51□□□□□ -0.89
LDLR-210ENST00000559340 CTNNA1P35221 906 aaKnown RBP9.51□□□□□ -0.89
LDLR-210ENST00000559340 CDH18Q13634 790 aa9.51□□□□□ -0.89
LDLR-210ENST00000559340 TFDP2Q14188 446 aa9.51□□□□□ -0.89
LDLR-210ENST00000559340 DMC1Q14565 340 aa9.51□□□□□ -0.89
LDLR-210ENST00000559340 SMTNL2Q2TAL5 461 aa9.51□□□□□ -0.89
LDLR-210ENST00000559340 SLC44A4Q53GD3 710 aa9.51□□□□□ -0.89
LDLR-210ENST00000559340 RAB6CQ53S08 254 aa9.51□□□□□ -0.89
LDLR-210ENST00000559340 KCNT1Q5JUK3 1230 aa9.51□□□□□ -0.89
LDLR-210ENST00000559340 C6orf118Q5T5N4 469 aa9.51□□□□□ -0.89
LDLR-210ENST00000559340 TRIM68Q6AZZ1 485 aa9.51□□□□□ -0.89
LDLR-210ENST00000559340 GRAMD4Q6IC98 578 aa9.51□□□□□ -0.89
LDLR-210ENST00000559340 ZNF783Q6ZMS7 281 aa9.51□□□□□ -0.89
LDLR-210ENST00000559340 BZW1Q7L1Q6 419 aaKnown RBP9.51□□□□□ -0.89
LDLR-210ENST00000559340 SETD3Q86TU7 594 aaPredicted RBP9.51□□□□□ -0.89
LDLR-210ENST00000559340 MFN1Q8IWA4 741 aa9.51□□□□□ -0.89
LDLR-210ENST00000559340 CARNMT1Q8N4J0 409 aa9.51□□□□□ -0.89
LDLR-210ENST00000559340 ST13P5Q8NFI4 369 aaPredicted RBP9.51□□□□□ -0.89
LDLR-210ENST00000559340 FIBINQ8TAL6 211 aa9.51□□□□□ -0.89
LDLR-210ENST00000559340 RIN3Q8TB24 985 aa9.51□□□□□ -0.89
LDLR-210ENST00000559340 FAM71BQ8TC56 605 aa9.51□□□□□ -0.89
LDLR-210ENST00000559340 TRAF3IP1Q8TDR0 691 aaPredicted RBP9.51□□□□□ -0.89
LDLR-210ENST00000559340 WFIKKN2Q8TEU8 576 aa9.51□□□□□ -0.89
LDLR-210ENST00000559340 UCMAQ8WVF2 138 aa9.51□□□□□ -0.89
LDLR-210ENST00000559340 PEBP4Q96S96 227 aa9.51□□□□□ -0.89
LDLR-210ENST00000559340 KCTD15Q96SI1 283 aaPredicted RBP9.51□□□□□ -0.89
LDLR-210ENST00000559340 PNKPQ96T60 521 aa9.51□□□□□ -0.89
LDLR-210ENST00000559340 ZNF670Q9BS34 389 aa9.51□□□□□ -0.89
LDLR-210ENST00000559340 CALN1Q9BXU9 219 aa9.51□□□□□ -0.89
LDLR-210ENST00000559340 RAB6CQ9H0N0 254 aa9.51□□□□□ -0.89
LDLR-210ENST00000559340 KCNH6Q9H252 994 aa9.51□□□□□ -0.89
LDLR-210ENST00000559340 PCDH18Q9HCL0 1135 aa9.51□□□□□ -0.89
LDLR-210ENST00000559340 GPATCH2LQ9NWQ4 482 aa9.51□□□□□ -0.89
LDLR-210ENST00000559340 GTSE1Q9NYZ3 720 aa9.51□□□□□ -0.89
LDLR-210ENST00000559340 XPO7Q9UIA9 1087 aaKnown RBP9.51□□□□□ -0.89
LDLR-210ENST00000559340 JRKLQ9Y4A0 524 aa9.51□□□□□ -0.89
LDLR-210ENST00000559340 CAPN6Q9Y6Q1 641 aa9.51□□□□□ -0.89
LDLR-210ENST00000559340 KIAA1549LQ6ZVL6 1849 aa9.5□□□□□ -0.89
LDLR-210ENST00000559340 A0A0U1RQJ8 604 aa9.5□□□□□ -0.89
LDLR-210ENST00000559340 WASH4PA8MWX3 477 aa9.5□□□□□ -0.89
LDLR-210ENST00000559340 KIF2AO00139 706 aaPredicted RBP9.5□□□□□ -0.89
LDLR-210ENST00000559340 ARNTLO00327 626 aa9.5□□□□□ -0.89
LDLR-210ENST00000559340 GFRA2O00451 464 aa9.5□□□□□ -0.89
LDLR-210ENST00000559340 NCAM2O15394 837 aa9.5□□□□□ -0.89
LDLR-210ENST00000559340 DCXO43602 365 aa9.5□□□□□ -0.89
LDLR-210ENST00000559340 CACNG3O60359 315 aa9.5□□□□□ -0.89
LDLR-210ENST00000559340 FTCDO95954 541 aa9.5□□□□□ -0.89
LDLR-210ENST00000559340 RHOCP08134 193 aa9.5□□□□□ -0.89
LDLR-210ENST00000559340 OR1E1P30953 314 aa9.5□□□□□ -0.89
LDLR-210ENST00000559340 HOXC13P31276 330 aa9.5□□□□□ -0.89
LDLR-210ENST00000559340 SERPINB6P35237 376 aa9.5□□□□□ -0.89
LDLR-210ENST00000559340 DGKGP49619 791 aa9.5□□□□□ -0.89
LDLR-210ENST00000559340 VCPP55072 806 aaKnown RBP9.5□□□□□ -0.89
LDLR-210ENST00000559340 YBEYP58557 167 aaPredicted RBP9.5□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms