RNA–Protein interactions for RNA: ENST00000557548.1

TRAV28-201, Transcript of T cell receptor alpha variable 28 (pseudogene), humanhuman

BASIC

Gene TRAV28, Length 323 nt, Biotype TR V pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV28-201ENST00000557548 GKP32189 559 aa3.41□□□□□ -1.86
TRAV28-201ENST00000557548 ICAM3P32942 547 aa3.41□□□□□ -1.86
TRAV28-201ENST00000557548 ACSL1P33121 698 aa3.41□□□□□ -1.86
TRAV28-201ENST00000557548 BSGP35613 385 aa3.41□□□□□ -1.86
TRAV28-201ENST00000557548 UFM1P61960 85 aa3.41□□□□□ -1.86
TRAV28-201ENST00000557548 IFI35P80217 286 aaPredicted RBP3.41□□□□□ -1.86
TRAV28-201ENST00000557548 FAM189BP81408 668 aa3.41□□□□□ -1.86
TRAV28-201ENST00000557548 NEXNQ0ZGT2 675 aa3.41□□□□□ -1.86
TRAV28-201ENST00000557548 RESTQ13127 1097 aa3.41□□□□□ -1.86
TRAV28-201ENST00000557548 CRHR2Q13324 411 aa3.41□□□□□ -1.86
TRAV28-201ENST00000557548 MED22Q15528 200 aa3.41□□□□□ -1.86
TRAV28-201ENST00000557548 KCNA10Q16322 511 aa3.41□□□□□ -1.86
TRAV28-201ENST00000557548 CYP1B1Q16678 543 aa3.41□□□□□ -1.86
TRAV28-201ENST00000557548 DUSP28Q4G0W2 176 aa3.41□□□□□ -1.86
TRAV28-201ENST00000557548 SH2D4BQ5SQS7 431 aa3.41□□□□□ -1.86
TRAV28-201ENST00000557548 TREML2Q5T2D2 321 aa3.41□□□□□ -1.86
TRAV28-201ENST00000557548 TCERG1LQ5VWI1 586 aa3.41□□□□□ -1.86
TRAV28-201ENST00000557548 SP5Q6BEB4 398 aaPredicted RBP3.41□□□□□ -1.86
TRAV28-201ENST00000557548 C17orf53Q8N3J3 647 aaPredicted RBP3.41□□□□□ -1.86
TRAV28-201ENST00000557548 WDTC1Q8N5D0 677 aa3.41□□□□□ -1.86
TRAV28-201ENST00000557548 NKAIN3Q8N8D7 197 aa3.41□□□□□ -1.86
TRAV28-201ENST00000557548 SYT8Q8NBV8 401 aa3.41□□□□□ -1.86
TRAV28-201ENST00000557548 MAFAQ8NHW3 353 aaPredicted RBP3.41□□□□□ -1.86
TRAV28-201ENST00000557548 FKBP10Q96AY3 582 aa3.41□□□□□ -1.86
TRAV28-201ENST00000557548 CTHRC1Q96CG8 243 aa3.41□□□□□ -1.86
TRAV28-201ENST00000557548 RSPRY1Q96DX4 576 aa3.41□□□□□ -1.86
TRAV28-201ENST00000557548 BOD1Q96IK1 185 aa3.41□□□□□ -1.86
TRAV28-201ENST00000557548 PRR25Q96S07 402 aa3.41□□□□□ -1.86
TRAV28-201ENST00000557548 CLSTN3Q9BQT9 956 aa3.41□□□□□ -1.86
TRAV28-201ENST00000557548 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP3.41□□□□□ -1.86
TRAV28-201ENST00000557548 ELOVL1Q9BW60 279 aa3.41□□□□□ -1.86
TRAV28-201ENST00000557548 RSPH9Q9H1X1 276 aaPredicted RBP3.41□□□□□ -1.86
TRAV28-201ENST00000557548 CDCP1Q9H5V8 836 aa3.41□□□□□ -1.86
TRAV28-201ENST00000557548 GALNT9Q9HCQ5 603 aa3.41□□□□□ -1.86
TRAV28-201ENST00000557548 ZCCHC17Q9NP64 241 aaKnown RBP3.41□□□□□ -1.86
TRAV28-201ENST00000557548 MRGBPQ9NV56 204 aa3.41□□□□□ -1.86
TRAV28-201ENST00000557548 PPP4R1LQ9P1A2 415 aa3.41□□□□□ -1.86
TRAV28-201ENST00000557548 CFDP1Q9UEE9 299 aaPredicted RBP3.41□□□□□ -1.86
TRAV28-201ENST00000557548 CORO1CQ9ULV4 474 aaPredicted RBP3.41□□□□□ -1.86
TRAV28-201ENST00000557548 TMEM5Q9Y2B1 443 aa3.41□□□□□ -1.86
TRAV28-201ENST00000557548 LYVE1Q9Y5Y7 322 aa3.41□□□□□ -1.86
TRAV28-201ENST00000557548 DUSP10Q9Y6W6 482 aa3.41□□□□□ -1.86
TRAV28-201ENST00000557548 ZNF536O15090 1300 aa3.41□□□□□ -1.86
TRAV28-201ENST00000557548 XDHP47989 1333 aa3.41□□□□□ -1.86
TRAV28-201ENST00000557548 GOLGA6L10A0A0M3HER8 536 aa3.4□□□□□ -1.87
TRAV28-201ENST00000557548 PABPN1LA6NDY0 278 aaKnown RBP3.4□□□□□ -1.87
TRAV28-201ENST00000557548 NPEPPSL1A6NEC2 478 aa3.4□□□□□ -1.87
TRAV28-201ENST00000557548 C3orf70A6NLC5 250 aaPredicted RBP3.4□□□□□ -1.87
TRAV28-201ENST00000557548 AP4M1O00189 453 aa3.4□□□□□ -1.87
TRAV28-201ENST00000557548 ZNF213O14771 459 aa3.4□□□□□ -1.87
TRAV28-201ENST00000557548 PER2O15055 1255 aa3.4□□□□□ -1.87
TRAV28-201ENST00000557548 LDLRAD4O15165 306 aa3.4□□□□□ -1.87
TRAV28-201ENST00000557548 CYP27B1O15528 508 aa3.4□□□□□ -1.87
TRAV28-201ENST00000557548 NUAK1O60285 661 aa3.4□□□□□ -1.87
TRAV28-201ENST00000557548 BEST1O76090 585 aa3.4□□□□□ -1.87
TRAV28-201ENST00000557548 KAT7O95251 611 aa3.4□□□□□ -1.87
TRAV28-201ENST00000557548 METTL18O95568 372 aa3.4□□□□□ -1.87
TRAV28-201ENST00000557548 IL6RP08887 468 aaPredicted RBP3.4□□□□□ -1.87
TRAV28-201ENST00000557548 TMIGD3P0DMS9 266 aaPredicted RBP3.4□□□□□ -1.87
TRAV28-201ENST00000557548 ARSAP15289 507 aa3.4□□□□□ -1.87
TRAV28-201ENST00000557548 IL11P20809 199 aa3.4□□□□□ -1.87
TRAV28-201ENST00000557548 ABCD1P33897 745 aa3.4□□□□□ -1.87
TRAV28-201ENST00000557548 CNR2P34972 360 aa3.4□□□□□ -1.87
TRAV28-201ENST00000557548 HNF1BP35680 557 aa3.4□□□□□ -1.87
TRAV28-201ENST00000557548 PPARGP37231 505 aaPredicted RBP3.4□□□□□ -1.87
TRAV28-201ENST00000557548 PBX3P40426 434 aa3.4□□□□□ -1.87
TRAV28-201ENST00000557548 GARSP41250 739 aaKnown RBP3.4□□□□□ -1.87
TRAV28-201ENST00000557548 CTCFP49711 727 aaPredicted RBP3.4□□□□□ -1.87
TRAV28-201ENST00000557548 MVDP53602 400 aa3.4□□□□□ -1.87
TRAV28-201ENST00000557548 TPTEP56180 551 aa3.4□□□□□ -1.87
TRAV28-201ENST00000557548 SUMO2P61956 95 aaKnown RBP3.4□□□□□ -1.87
TRAV28-201ENST00000557548 RAE1P78406 368 aaKnown RBP3.4□□□□□ -1.87
TRAV28-201ENST00000557548 TXNL4AP83876 142 aaKnown RBP3.4□□□□□ -1.87
TRAV28-201ENST00000557548 E2F1Q01094 437 aa3.4□□□□□ -1.87
TRAV28-201ENST00000557548 ROR1Q01973 937 aa3.4□□□□□ -1.87
TRAV28-201ENST00000557548 CALD1Q05682 793 aaKnown RBP3.4□□□□□ -1.87
TRAV28-201ENST00000557548 LRMPQ12912 555 aa3.4□□□□□ -1.87
TRAV28-201ENST00000557548 CDC16Q13042 620 aa3.4□□□□□ -1.87
TRAV28-201ENST00000557548 DNASE1L3Q13609 305 aa3.4□□□□□ -1.87
TRAV28-201ENST00000557548 PSMD6Q15008 389 aa3.4□□□□□ -1.87
TRAV28-201ENST00000557548 RASA2Q15283 850 aa3.4□□□□□ -1.87
TRAV28-201ENST00000557548 SLC9B1Q4ZJI4 515 aa3.4□□□□□ -1.87
TRAV28-201ENST00000557548 TAGAPQ8N103 731 aa3.4□□□□□ -1.87
TRAV28-201ENST00000557548 TTC30BQ8N4P2 665 aa3.4□□□□□ -1.87
TRAV28-201ENST00000557548 BEND2Q8NDZ0 799 aa3.4□□□□□ -1.87
TRAV28-201ENST00000557548 TOR1AIP2Q8NFQ8 470 aa3.4□□□□□ -1.87
TRAV28-201ENST00000557548 TNIP2Q8NFZ5 429 aa3.4□□□□□ -1.87
TRAV28-201ENST00000557548 OR52L2PQ8NGH6 319 aa3.4□□□□□ -1.87
TRAV28-201ENST00000557548 MYCBPAPQ8TBZ2 947 aa3.4□□□□□ -1.87
TRAV28-201ENST00000557548 SSH3Q8TE77 659 aa3.4□□□□□ -1.87
TRAV28-201ENST00000557548 SCFD2Q8WU76 684 aa3.4□□□□□ -1.87
TRAV28-201ENST00000557548 GLMPQ8WWB7 406 aa3.4□□□□□ -1.87
TRAV28-201ENST00000557548 KLHL29Q96CT2 875 aa3.4□□□□□ -1.87
TRAV28-201ENST00000557548 SAAL1Q96ER3 474 aa3.4□□□□□ -1.87
TRAV28-201ENST00000557548 BAG1Q99933 345 aaPredicted RBP3.4□□□□□ -1.87
TRAV28-201ENST00000557548 ZCCHC4Q9H5U6 513 aa3.4□□□□□ -1.87
TRAV28-201ENST00000557548 EPHX3Q9H6B9 360 aa3.4□□□□□ -1.87
TRAV28-201ENST00000557548 ERVK-5Q9HDB9 667 aa3.4□□□□□ -1.87
TRAV28-201ENST00000557548 AKIP1Q9NQ31 210 aa3.4□□□□□ -1.87
TRAV28-201ENST00000557548 TMEM74BQ9NUR3 256 aa3.4□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms