RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, human

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-223	ENST00000556689	TLX3	O43711	291 aa	Predicted RBP	13.15	□□□□□ -0.3
SHMT2-223	ENST00000556689	STX10	O60499	249 aa		13.15	□□□□□ -0.3
SHMT2-223	ENST00000556689	SIN3B	O75182	1162 aa		13.15	□□□□□ -0.3
SHMT2-223	ENST00000556689	RNASEH2A	O75792	299 aa	Known RBP	13.15	□□□□□ -0.3
SHMT2-223	ENST00000556689	ASL	P04424	464 aa		13.15	□□□□□ -0.3
SHMT2-223	ENST00000556689	ZSCAN22	P10073	491 aa	Predicted RBP	13.15	□□□□□ -0.3
SHMT2-223	ENST00000556689	ARRB1	P49407	418 aa	Predicted RBP	13.15	□□□□□ -0.3
SHMT2-223	ENST00000556689	CLDN6	P56747	220 aa		13.15	□□□□□ -0.3
SHMT2-223	ENST00000556689	MCCD1	P59942	119 aa	Predicted RBP	13.15	□□□□□ -0.3
SHMT2-223	ENST00000556689	BST2	Q10589	180 aa	Known RBP	13.15	□□□□□ -0.3
SHMT2-223	ENST00000556689	CST6	Q15828	149 aa		13.15	□□□□□ -0.3
SHMT2-223	ENST00000556689	HNRNPA1L2	Q32P51	320 aa	Known RBP	13.15	□□□□□ -0.3
SHMT2-223	ENST00000556689	SGO2	Q562F6	1265 aa		13.15	□□□□□ -0.3
SHMT2-223	ENST00000556689	C9orf64	Q5T6V5	341 aa		13.15	□□□□□ -0.3
SHMT2-223	ENST00000556689	MMAA	Q8IVH4	418 aa	Known RBP	13.15	□□□□□ -0.3
SHMT2-223	ENST00000556689	UBA3	Q8TBC4	463 aa		13.15	□□□□□ -0.3
SHMT2-223	ENST00000556689	KCTD13	Q8WZ19	329 aa		13.15	□□□□□ -0.3
SHMT2-223	ENST00000556689	BAP1	Q92560	729 aa		13.15	□□□□□ -0.3
SHMT2-223	ENST00000556689	TSC1	Q92574	1164 aa		13.15	□□□□□ -0.3
SHMT2-223	ENST00000556689	MYO19	Q96H55	970 aa		13.15	□□□□□ -0.3
SHMT2-223	ENST00000556689	LMLN	Q96KR4	655 aa		13.15	□□□□□ -0.3
SHMT2-223	ENST00000556689	CNGB3	Q9NQW8	809 aa		13.15	□□□□□ -0.3
SHMT2-223	ENST00000556689	SERGEF	Q9UGK8	458 aa		13.15	□□□□□ -0.3
SHMT2-223	ENST00000556689	ADAMTS1	Q9UHI8	967 aa		13.15	□□□□□ -0.3
SHMT2-223	ENST00000556689	GCN1	Q92616	2671 aa	Known RBP	13.14	□□□□□ -0.31
SHMT2-223	ENST00000556689		A0A1W2PR77	199 aa		13.14	□□□□□ -0.31
SHMT2-223	ENST00000556689	TARSL2	A2RTX5	802 aa	Known RBP	13.14	□□□□□ -0.31
SHMT2-223	ENST00000556689	TLR4	O00206	839 aa		13.14	□□□□□ -0.31
SHMT2-223	ENST00000556689	ACSL4	O60488	711 aa		13.14	□□□□□ -0.31
SHMT2-223	ENST00000556689	C1QL1	O75973	258 aa		13.14	□□□□□ -0.31
SHMT2-223	ENST00000556689	RHOBTB3	O94955	611 aa		13.14	□□□□□ -0.31
SHMT2-223	ENST00000556689	F13A1	P00488	732 aa		13.14	□□□□□ -0.31
SHMT2-223	ENST00000556689	LCP1	P13796	627 aa		13.14	□□□□□ -0.31
SHMT2-223	ENST00000556689	CMA1	P23946	247 aa		13.14	□□□□□ -0.31
SHMT2-223	ENST00000556689	SLC6A4	P31645	630 aa		13.14	□□□□□ -0.31
SHMT2-223	ENST00000556689	SLC8A1	P32418	973 aa		13.14	□□□□□ -0.31
SHMT2-223	ENST00000556689	CSK	P41240	450 aa		13.14	□□□□□ -0.31
SHMT2-223	ENST00000556689	RXRG	P48443	463 aa		13.14	□□□□□ -0.31
SHMT2-223	ENST00000556689	ACADVL	P49748	655 aa		13.14	□□□□□ -0.31
SHMT2-223	ENST00000556689	MXI1	P50539	228 aa		13.14	□□□□□ -0.31
SHMT2-223	ENST00000556689	CCR5	P51681	352 aa		13.14	□□□□□ -0.31
SHMT2-223	ENST00000556689	BNIP3	Q12983	259 aa		13.14	□□□□□ -0.31
SHMT2-223	ENST00000556689	ILK	Q13418	452 aa		13.14	□□□□□ -0.31
SHMT2-223	ENST00000556689	KCNJ12	Q14500	433 aa		13.14	□□□□□ -0.31
SHMT2-223	ENST00000556689	ARID5B	Q14865	1188 aa		13.14	□□□□□ -0.31
SHMT2-223	ENST00000556689	SLC45A4	Q5BKX6	768 aa		13.14	□□□□□ -0.31
SHMT2-223	ENST00000556689	HES3	Q5TGS1	186 aa		13.14	□□□□□ -0.31
SHMT2-223	ENST00000556689	NUGGC	Q68CJ6	796 aa		13.14	□□□□□ -0.31
SHMT2-223	ENST00000556689	MSANTD2	Q6P1R3	559 aa		13.14	□□□□□ -0.31
SHMT2-223	ENST00000556689	FBXL19	Q6PCT2	694 aa		13.14	□□□□□ -0.31
SHMT2-223	ENST00000556689	MFN1	Q8IWA4	741 aa		13.14	□□□□□ -0.31
SHMT2-223	ENST00000556689	CCDC117	Q8IWD4	279 aa	Predicted RBP	13.14	□□□□□ -0.31
SHMT2-223	ENST00000556689	DHX40	Q8IX18	779 aa	Known RBP	13.14	□□□□□ -0.31
SHMT2-223	ENST00000556689	SCML4	Q8N228	414 aa		13.14	□□□□□ -0.31
SHMT2-223	ENST00000556689	KDM1B	Q8NB78	822 aa		13.14	□□□□□ -0.31
SHMT2-223	ENST00000556689	FGF11	Q92914	225 aa		13.14	□□□□□ -0.31
SHMT2-223	ENST00000556689	AZIN2	Q96A70	460 aa		13.14	□□□□□ -0.31
SHMT2-223	ENST00000556689	SERAC1	Q96JX3	654 aa		13.14	□□□□□ -0.31
SHMT2-223	ENST00000556689	DDX50	Q9BQ39	737 aa	Known RBP	13.14	□□□□□ -0.31
SHMT2-223	ENST00000556689	ERVMER34-1	Q9H9K5	563 aa		13.14	□□□□□ -0.31
SHMT2-223	ENST00000556689	KIAA1257	Q9ULG3	409 aa		13.14	□□□□□ -0.31
SHMT2-223	ENST00000556689	FZD4	Q9ULV1	537 aa		13.14	□□□□□ -0.31
SHMT2-223	ENST00000556689	TPX2	Q9ULW0	747 aa	Known RBP	13.14	□□□□□ -0.31
SHMT2-223	ENST00000556689	KNTC1	P50748	2209 aa		13.13	□□□□□ -0.31
SHMT2-223	ENST00000556689		A0A1B0GVL5	298 aa		13.13	□□□□□ -0.31
SHMT2-223	ENST00000556689	TYW5	A2RUC4	315 aa	Known RBP	13.13	□□□□□ -0.31
SHMT2-223	ENST00000556689	CAPN9	O14815	690 aa		13.13	□□□□□ -0.31
SHMT2-223	ENST00000556689	WNT9A	O14904	365 aa		13.13	□□□□□ -0.31
SHMT2-223	ENST00000556689	IGLV3-27	P01718	113 aa		13.13	□□□□□ -0.31
SHMT2-223	ENST00000556689	SRPRA	P08240	638 aa	Known RBP	13.13	□□□□□ -0.31
SHMT2-223	ENST00000556689	VDR	P11473	427 aa		13.13	□□□□□ -0.31
SHMT2-223	ENST00000556689	CD19	P15391	556 aa		13.13	□□□□□ -0.31
SHMT2-223	ENST00000556689	PFKFB1	P16118	471 aa		13.13	□□□□□ -0.31
SHMT2-223	ENST00000556689	GOT1	P17174	413 aa		13.13	□□□□□ -0.31
SHMT2-223	ENST00000556689	CKMT2	P17540	419 aa		13.13	□□□□□ -0.31
SHMT2-223	ENST00000556689	DAOA	P59103	153 aa		13.13	□□□□□ -0.31
SHMT2-223	ENST00000556689	FAM133B	Q5BKY9	247 aa	Known RBP	13.13	□□□□□ -0.31
SHMT2-223	ENST00000556689	SND1	Q7KZF4	910 aa	Known RBP eCLIP	13.13	□□□□□ -0.31	5e-6	■■□□□ 13.1
SHMT2-223	ENST00000556689	ZNF605	Q86T29	641 aa		13.13	□□□□□ -0.31
SHMT2-223	ENST00000556689	GUF1	Q8N442	669 aa	Known RBP	13.13	□□□□□ -0.31
SHMT2-223	ENST00000556689	CARNMT1	Q8N4J0	409 aa		13.13	□□□□□ -0.31
SHMT2-223	ENST00000556689	OXR1	Q8N573	874 aa		13.13	□□□□□ -0.31
SHMT2-223	ENST00000556689	OR14C36	Q8NHC7	312 aa		13.13	□□□□□ -0.31
SHMT2-223	ENST00000556689	SNIP1	Q8TAD8	396 aa	Known RBP	13.13	□□□□□ -0.31
SHMT2-223	ENST00000556689	SNX21	Q969T3	373 aa		13.13	□□□□□ -0.31
SHMT2-223	ENST00000556689	MRGPRX3	Q96LB0	322 aa		13.13	□□□□□ -0.31
SHMT2-223	ENST00000556689	FCRL3	Q96P31	734 aa	Predicted RBP	13.13	□□□□□ -0.31
SHMT2-223	ENST00000556689	FAM129B	Q96TA1	746 aa		13.13	□□□□□ -0.31
SHMT2-223	ENST00000556689	INTS6	Q9UL03	887 aa	Known RBP	13.13	□□□□□ -0.31
SHMT2-223	ENST00000556689	ERVW-1	Q9UQF0	538 aa		13.13	□□□□□ -0.31
SHMT2-223	ENST00000556689	TBC1D3D	A0A087WVF3	549 aa		13.12	□□□□□ -0.31
SHMT2-223	ENST00000556689	TBC1D3I	A0A087WXS9	549 aa		13.12	□□□□□ -0.31
SHMT2-223	ENST00000556689	TBC1D3E	A0A087X179	549 aa		13.12	□□□□□ -0.31
SHMT2-223	ENST00000556689	TBC1D3K	A0A087X1G2	549 aa		13.12	□□□□□ -0.31
SHMT2-223	ENST00000556689	TBC1D3F	A6NER0	549 aa	Predicted RBP	13.12	□□□□□ -0.31
SHMT2-223	ENST00000556689	TTC34	A8MYJ7	566 aa		13.12	□□□□□ -0.31
SHMT2-223	ENST00000556689	C10orf142	B7Z368	130 aa		13.12	□□□□□ -0.31
SHMT2-223	ENST00000556689	TBC1D3L	B9A6J9	549 aa		13.12	□□□□□ -0.31
SHMT2-223	ENST00000556689	TBC1D3H	P0C7X1	549 aa		13.12	□□□□□ -0.31
SHMT2-223	ENST00000556689	SETSIP	P0DME0	302 aa		13.12	□□□□□ -0.31

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