RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 TMPRSS4Q9NRS4 437 aa14.18□□□□□ -0.14
SHMT2-219ENST00000555563 TAS2R14Q9NYV8 317 aa14.18□□□□□ -0.14
SHMT2-219ENST00000555563 AIPL1Q9NZN9 384 aa14.18□□□□□ -0.14
SHMT2-219ENST00000555563 VANGL2Q9ULK5 521 aa14.18□□□□□ -0.14
SHMT2-219ENST00000555563 GPR179Q6PRD1 2367 aa14.18□□□□□ -0.14
SHMT2-219ENST00000555563 OTOGLQ3ZCN5 2332 aa14.18□□□□□ -0.14
SHMT2-219ENST00000555563 CKAP5Q14008 2032 aa14.17□□□□□ -0.14
SHMT2-219ENST00000555563 A0A1B0GVM2 712 aa14.17□□□□□ -0.14
SHMT2-219ENST00000555563 TCRBV5S1A1TA0A578 114 aa14.17□□□□□ -0.14
SHMT2-219ENST00000555563 TCAF2A6NFQ2 919 aa14.17□□□□□ -0.14
SHMT2-219ENST00000555563 C2CD4BA6NLJ0 364 aa14.17□□□□□ -0.14
SHMT2-219ENST00000555563 H0Y626 953 aa14.17□□□□□ -0.14
SHMT2-219ENST00000555563 BCKDHBP21953 392 aa14.17□□□□□ -0.14
SHMT2-219ENST00000555563 SDC4P31431 198 aa14.17□□□□□ -0.14
SHMT2-219ENST00000555563 PRKCIP41743 596 aa14.17□□□□□ -0.14
SHMT2-219ENST00000555563 ATP11AP98196 1134 aa14.17□□□□□ -0.14
SHMT2-219ENST00000555563 PTPRNQ16849 979 aa14.17□□□□□ -0.14
SHMT2-219ENST00000555563 C15orf59Q2T9L4 293 aaPredicted RBP14.17□□□□□ -0.14
SHMT2-219ENST00000555563 USP39Q53GS9 565 aaKnown RBP14.17□□□□□ -0.14
SHMT2-219ENST00000555563 RAB6CQ53S08 254 aa14.17□□□□□ -0.14
SHMT2-219ENST00000555563 RABGAP1LQ5R372 815 aa14.17□□□□□ -0.14
SHMT2-219ENST00000555563 TTC39BQ5VTQ0 682 aaPredicted RBP14.17□□□□□ -0.14
SHMT2-219ENST00000555563 SERPINA13PQ6UXR4 307 aa14.17□□□□□ -0.14
SHMT2-219ENST00000555563 ZNF571Q7Z3V5 609 aaPredicted RBP14.17□□□□□ -0.14
SHMT2-219ENST00000555563 C14orf80Q86SX3 495 aa14.17□□□□□ -0.14
SHMT2-219ENST00000555563 FAM131BQ86XD5 332 aa14.17□□□□□ -0.14
SHMT2-219ENST00000555563 CCDC117Q8IWD4 279 aaPredicted RBP14.17□□□□□ -0.14
SHMT2-219ENST00000555563 CCAR2Q8N163 923 aaKnown RBP14.17□□□□□ -0.14
SHMT2-219ENST00000555563 RXFP2Q8WXD0 754 aa14.17□□□□□ -0.14
SHMT2-219ENST00000555563 RLN3Q8WXF3 142 aa14.17□□□□□ -0.14
SHMT2-219ENST00000555563 IGSF8Q969P0 613 aa14.17□□□□□ -0.14
SHMT2-219ENST00000555563 RPRD1AQ96P16 312 aaPredicted RBP14.17□□□□□ -0.14
SHMT2-219ENST00000555563 NUP58Q9BVL2 599 aa14.17□□□□□ -0.14
SHMT2-219ENST00000555563 SELENOOQ9BVL4 669 aa14.17□□□□□ -0.14
SHMT2-219ENST00000555563 SIK2Q9H0K1 926 aa14.17□□□□□ -0.14
SHMT2-219ENST00000555563 RAB6CQ9H0N0 254 aa14.17□□□□□ -0.14
SHMT2-219ENST00000555563 SLC6A17Q9H1V8 727 aa14.17□□□□□ -0.14
SHMT2-219ENST00000555563 HAUS4Q9H6D7 363 aa14.17□□□□□ -0.14
SHMT2-219ENST00000555563 WDCPQ9H6R7 721 aa14.17□□□□□ -0.14
SHMT2-219ENST00000555563 INTS6Q9UL03 887 aaKnown RBP14.17□□□□□ -0.14
SHMT2-219ENST00000555563 PAXBP1Q9Y5B6 917 aa14.17□□□□□ -0.14
SHMT2-219ENST00000555563 SNX10Q9Y5X0 201 aa14.17□□□□□ -0.14
SHMT2-219ENST00000555563 PLXND1Q9Y4D7 1925 aa14.17□□□□□ -0.14
SHMT2-219ENST00000555563 RIF1Q5UIP0 2472 aaKnown RBP14.16□□□□□ -0.14
SHMT2-219ENST00000555563 A0A1W2PQJ5 194 aa14.16□□□□□ -0.14
SHMT2-219ENST00000555563 RETP07949 1114 aa14.16□□□□□ -0.14
SHMT2-219ENST00000555563 DLDP09622 509 aaKnown RBP14.16□□□□□ -0.14
SHMT2-219ENST00000555563 KRT3P12035 628 aa14.16□□□□□ -0.14
SHMT2-219ENST00000555563 HLA-EP13747 358 aa14.16□□□□□ -0.14
SHMT2-219ENST00000555563 PDGFRAP16234 1089 aa14.16□□□□□ -0.14
SHMT2-219ENST00000555563 POLR2EP19388 210 aaKnown RBP14.16□□□□□ -0.14
SHMT2-219ENST00000555563 TNFAIP3P21580 790 aa14.16□□□□□ -0.14
SHMT2-219ENST00000555563 P2RY2P41231 377 aa14.16□□□□□ -0.14
SHMT2-219ENST00000555563 CSKP41240 450 aa14.16□□□□□ -0.14
SHMT2-219ENST00000555563 KLHL30Q0D2K2 578 aa14.16□□□□□ -0.14
SHMT2-219ENST00000555563 STARD3Q14849 445 aa14.16□□□□□ -0.14
SHMT2-219ENST00000555563 E2F5Q15329 346 aa14.16□□□□□ -0.14
SHMT2-219ENST00000555563 CDO1Q16878 200 aa14.16□□□□□ -0.14
SHMT2-219ENST00000555563 PLK5Q496M5 336 aa14.16□□□□□ -0.14
SHMT2-219ENST00000555563 CCDC14Q49A88 953 aa14.16□□□□□ -0.14
SHMT2-219ENST00000555563 FNDC3BQ53EP0 1204 aaKnown RBP14.16□□□□□ -0.14
SHMT2-219ENST00000555563 PITRM1Q5JRX3 1037 aa14.16□□□□□ -0.14
SHMT2-219ENST00000555563 ACAD10Q6JQN1 1059 aa14.16□□□□□ -0.14
SHMT2-219ENST00000555563 CXorf57Q6NSI4 855 aaKnown RBP14.16□□□□□ -0.14
SHMT2-219ENST00000555563 DNAJC24Q6P3W2 148 aa14.16□□□□□ -0.14
SHMT2-219ENST00000555563 ZNF683Q8IZ20 524 aa14.16□□□□□ -0.14
SHMT2-219ENST00000555563 MCOLN2Q8IZK6 566 aa14.16□□□□□ -0.14
SHMT2-219ENST00000555563 FRMD1Q8N878 549 aa14.16□□□□□ -0.14
SHMT2-219ENST00000555563 ZNF366Q8N895 744 aa14.16□□□□□ -0.14
SHMT2-219ENST00000555563 RNF214Q8ND24 703 aa14.16□□□□□ -0.14
SHMT2-219ENST00000555563 ZC3H10Q96K80 434 aaKnown RBP14.16□□□□□ -0.14
SHMT2-219ENST00000555563 SPACA7Q96KW9 195 aa14.16□□□□□ -0.14
SHMT2-219ENST00000555563 MRGPRX1Q96LB2 322 aa14.16□□□□□ -0.14
SHMT2-219ENST00000555563 XPO4Q9C0E2 1151 aaKnown RBP14.16□□□□□ -0.14
SHMT2-219ENST00000555563 TMEM245Q9H330 911 aa14.16□□□□□ -0.14
SHMT2-219ENST00000555563 FAM186AA6NE01 2351 aa14.15□□□□□ -0.14
SHMT2-219ENST00000555563 TMCO5BA8MYB1 307 aa14.15□□□□□ -0.14
SHMT2-219ENST00000555563 DDX3XO00571 662 aaKnown RBP eCLIP14.15□□□□□ -0.148e-15■■□□□ 14.3
SHMT2-219ENST00000555563 ZBTB24O43167 697 aaPredicted RBP14.15□□□□□ -0.14
SHMT2-219ENST00000555563 ATMINO43313 823 aaPredicted RBP14.15□□□□□ -0.14
SHMT2-219ENST00000555563 SYNCRIPO60506 623 aaKnown RBP14.15□□□□□ -0.14
SHMT2-219ENST00000555563 ENDOD1O94919 500 aa14.15□□□□□ -0.14
SHMT2-219ENST00000555563 GYPCP04921 128 aa14.15□□□□□ -0.14
SHMT2-219ENST00000555563 ATP5BP06576 529 aaKnown RBP14.15□□□□□ -0.14
SHMT2-219ENST00000555563 EPHX1P07099 455 aa14.15□□□□□ -0.14
SHMT2-219ENST00000555563 SKILP12757 684 aa14.15□□□□□ -0.14
SHMT2-219ENST00000555563 GPD1P21695 349 aa14.15□□□□□ -0.14
SHMT2-219ENST00000555563 RRM1P23921 792 aa14.15□□□□□ -0.14
SHMT2-219ENST00000555563 RFC1P35251 1148 aaPredicted RBP14.15□□□□□ -0.14
SHMT2-219ENST00000555563 PTPN9P43378 593 aa14.15□□□□□ -0.14
SHMT2-219ENST00000555563 NUMBP49757 651 aa14.15□□□□□ -0.14
SHMT2-219ENST00000555563 ELF2Q15723 593 aa14.15□□□□□ -0.14
SHMT2-219ENST00000555563 MAP7D1Q3KQU3 841 aa14.15□□□□□ -0.14
SHMT2-219ENST00000555563 PLEKHG6Q3KR16 790 aa14.15□□□□□ -0.14
SHMT2-219ENST00000555563 SH3PXD2AQ5TCZ1 1133 aa14.15□□□□□ -0.14
SHMT2-219ENST00000555563 KIAA1324Q6UXG2 1013 aaKnown RBP14.15□□□□□ -0.14
SHMT2-219ENST00000555563 DNAAF5Q86Y56 855 aa14.15□□□□□ -0.14
SHMT2-219ENST00000555563 KIAA2013Q8IYS2 634 aa14.15□□□□□ -0.14
SHMT2-219ENST00000555563 APCDD1Q8J025 514 aa14.15□□□□□ -0.14
SHMT2-219ENST00000555563 TTC17Q96AE7 1141 aa14.15□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms