RNA–Protein interactions for RNA: ENST00000554467.5

SHMT2-212, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 3,416 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-212ENST00000554467 TFB1MQ8WVM0 346 aaKnown RBP12.03□□□□□ -0.48
SHMT2-212ENST00000554467 SUSD3Q96L08 255 aa12.03□□□□□ -0.48
SHMT2-212ENST00000554467 TTC25Q96NG3 672 aa12.03□□□□□ -0.48
SHMT2-212ENST00000554467 DEFB118Q96PH6 123 aa12.03□□□□□ -0.48
SHMT2-212ENST00000554467 COLEC11Q9BWP8 271 aa12.03□□□□□ -0.48
SHMT2-212ENST00000554467 FOXP3Q9BZS1 431 aa12.03□□□□□ -0.48
SHMT2-212ENST00000554467 MAD1L1Q9Y6D9 718 aa12.03□□□□□ -0.48
SHMT2-212ENST00000554467 ARVCFO00192 962 aa12.02□□□□□ -0.48
SHMT2-212ENST00000554467 PDHA1P08559 390 aa12.02□□□□□ -0.48
SHMT2-212ENST00000554467 ERCC2P18074 760 aa12.02□□□□□ -0.48
SHMT2-212ENST00000554467 SLC5A3P53794 718 aa12.02□□□□□ -0.48
SHMT2-212ENST00000554467 CAND1Q86VP6 1230 aaKnown RBP12.02□□□□□ -0.48
SHMT2-212ENST00000554467 ANKLE1Q8NAG6 615 aa12.02□□□□□ -0.48
SHMT2-212ENST00000554467 HTR3CQ8WXA8 447 aa12.02□□□□□ -0.48
SHMT2-212ENST00000554467 MAML1Q92585 1016 aa12.02□□□□□ -0.48
SHMT2-212ENST00000554467 QKIQ96PU8 341 aaKnown RBP eCLIP12.02□□□□□ -0.48
SHMT2-212ENST00000554467 FAM193BQ96PV7 902 aaPredicted RBP12.02□□□□□ -0.48
SHMT2-212ENST00000554467 PKMYT1Q99640 499 aa12.02□□□□□ -0.48
SHMT2-212ENST00000554467 KLC2Q9H0B6 622 aa12.02□□□□□ -0.48
SHMT2-212ENST00000554467 WDCPQ9H6R7 721 aa12.02□□□□□ -0.48
SHMT2-212ENST00000554467 H3BRJ5 948 aa12.02□□□□□ -0.49
SHMT2-212ENST00000554467 RNF103O00237 685 aa12.02□□□□□ -0.49
SHMT2-212ENST00000554467 TADA2AO75478 443 aa12.02□□□□□ -0.49
SHMT2-212ENST00000554467 FBXO21O94952 628 aa12.02□□□□□ -0.49
SHMT2-212ENST00000554467 MOCS2O96007 188 aaPredicted RBP12.02□□□□□ -0.49
SHMT2-212ENST00000554467 ABHD2P08910 425 aa12.02□□□□□ -0.49
SHMT2-212ENST00000554467 TPI1P60174 286 aa12.02□□□□□ -0.49
SHMT2-212ENST00000554467 ATAD1Q8NBU5 361 aa12.02□□□□□ -0.49
SHMT2-212ENST00000554467 PXYLP1Q8TE99 480 aa12.02□□□□□ -0.49
SHMT2-212ENST00000554467 P2RY11Q96G91 374 aa12.02□□□□□ -0.49
SHMT2-212ENST00000554467 AGAP3Q96P47 875 aa12.02□□□□□ -0.49
SHMT2-212ENST00000554467 PAFAH2Q99487 392 aa12.02□□□□□ -0.49
SHMT2-212ENST00000554467 GORASP1Q9BQQ3 440 aa12.02□□□□□ -0.49
SHMT2-212ENST00000554467 NSRP1Q9H0G5 558 aaKnown RBP12.02□□□□□ -0.49
SHMT2-212ENST00000554467 OCEL1Q9H607 264 aa12.02□□□□□ -0.49
SHMT2-212ENST00000554467 EURLQ9NYK6 297 aa12.02□□□□□ -0.49
SHMT2-212ENST00000554467 RANBP2P49792 3224 aaKnown RBP12.02□□□□□ -0.49
SHMT2-212ENST00000554467 SNX3O60493 162 aa12.02□□□□□ -0.49
SHMT2-212ENST00000554467 COQ9O75208 318 aa12.02□□□□□ -0.49
SHMT2-212ENST00000554467 CYP11A1P05108 521 aa12.02□□□□□ -0.49
SHMT2-212ENST00000554467 APLP1P51693 650 aa12.02□□□□□ -0.49
SHMT2-212ENST00000554467 RWDD4Q6NW29 188 aaKnown RBP12.02□□□□□ -0.49
SHMT2-212ENST00000554467 CROCCP2Q86T23 111 aa12.02□□□□□ -0.49
SHMT2-212ENST00000554467 COLGALT2Q8IYK4 626 aa12.02□□□□□ -0.49
SHMT2-212ENST00000554467 UNC5BQ8IZJ1 945 aa12.02□□□□□ -0.49
SHMT2-212ENST00000554467 VPS52Q8N1B4 723 aa12.02□□□□□ -0.49
SHMT2-212ENST00000554467 FITM2Q8N6M3 262 aa12.02□□□□□ -0.49
SHMT2-212ENST00000554467 DQX1Q8TE96 717 aaKnown RBP12.02□□□□□ -0.49
SHMT2-212ENST00000554467 PPP1R12CQ9BZL4 782 aa12.02□□□□□ -0.49
SHMT2-212ENST00000554467 TRABDQ9H4I3 376 aa12.02□□□□□ -0.49
SHMT2-212ENST00000554467 CSNK1G1Q9HCP0 422 aa12.02□□□□□ -0.49
SHMT2-212ENST00000554467 FBXW11Q9UKB1 542 aa12.02□□□□□ -0.49
SHMT2-212ENST00000554467 SLC27A5Q9Y2P5 690 aa12.02□□□□□ -0.49
SHMT2-212ENST00000554467 SHROOM3Q8TF72 1996 aa12.01□□□□□ -0.49
SHMT2-212ENST00000554467 TCRBV9S1A1TA0A576 114 aa12.01□□□□□ -0.49
SHMT2-212ENST00000554467 USP12O75317 370 aa12.01□□□□□ -0.49
SHMT2-212ENST00000554467 RPLP2P05387 115 aaKnown RBP12.01□□□□□ -0.49
SHMT2-212ENST00000554467 GM2AP17900 193 aa12.01□□□□□ -0.49
SHMT2-212ENST00000554467 RANBP1P43487 201 aa12.01□□□□□ -0.49
SHMT2-212ENST00000554467 KBTBD12Q3ZCT8 623 aa12.01□□□□□ -0.49
SHMT2-212ENST00000554467 FAM171A1Q5VUB5 890 aa12.01□□□□□ -0.49
SHMT2-212ENST00000554467 BNIPLQ7Z465 357 aa12.01□□□□□ -0.49
SHMT2-212ENST00000554467 DEFB128Q7Z7B8 93 aa12.01□□□□□ -0.49
SHMT2-212ENST00000554467 TMEM173Q86WV6 379 aaPredicted RBP12.01□□□□□ -0.49
SHMT2-212ENST00000554467 CTAGE3PQ8IX95 158 aa12.01□□□□□ -0.49
SHMT2-212ENST00000554467 ABI1Q8IZP0 508 aa12.01□□□□□ -0.49
SHMT2-212ENST00000554467 PDCD7Q8N8D1 485 aaKnown RBP12.01□□□□□ -0.49
SHMT2-212ENST00000554467 ZFAND2BQ8WV99 257 aa12.01□□□□□ -0.49
SHMT2-212ENST00000554467 OLFM3Q96PB7 478 aa12.01□□□□□ -0.49
SHMT2-212ENST00000554467 GPR62Q9BZJ7 368 aa12.01□□□□□ -0.49
SHMT2-212ENST00000554467 NMUR1Q9HB89 426 aa12.01□□□□□ -0.49
SHMT2-212ENST00000554467 IL1RAPL1Q9NZN1 696 aa12.01□□□□□ -0.49
SHMT2-212ENST00000554467 OR12D3Q9UGF7 316 aa12.01□□□□□ -0.49
SHMT2-212ENST00000554467 LGALS13Q9UHV8 139 aa12.01□□□□□ -0.49
SHMT2-212ENST00000554467 TSC2P49815 1807 aa12.01□□□□□ -0.49
SHMT2-212ENST00000554467 KIAA0100Q14667 2235 aaKnown RBP12.01□□□□□ -0.49
SHMT2-212ENST00000554467 UGT1A9O60656 530 aa12.01□□□□□ -0.49
SHMT2-212ENST00000554467 FKTNO75072 461 aa12.01□□□□□ -0.49
SHMT2-212ENST00000554467 TCEA3O75764 348 aa12.01□□□□□ -0.49
SHMT2-212ENST00000554467 ZFXP17010 805 aaPredicted RBP12.01□□□□□ -0.49
SHMT2-212ENST00000554467 EPHB2P29323 1055 aa12.01□□□□□ -0.49
SHMT2-212ENST00000554467 DPYSQ14117 519 aa12.01□□□□□ -0.49
SHMT2-212ENST00000554467 SPATA21Q7Z572 469 aa12.01□□□□□ -0.49
SHMT2-212ENST00000554467 TEX9Q8N6V9 391 aa12.01□□□□□ -0.49
SHMT2-212ENST00000554467 URGCPQ8TCY9 931 aa12.01□□□□□ -0.49
SHMT2-212ENST00000554467 KLHL29Q96CT2 875 aa12.01□□□□□ -0.49
SHMT2-212ENST00000554467 XRN2Q9H0D6 950 aaKnown RBP eCLIP12.01□□□□□ -0.494e-7■■□□□ 13.4
SHMT2-212ENST00000554467 UGT1A7Q9HAW7 530 aa12.01□□□□□ -0.49
SHMT2-212ENST00000554467 UGT1A10Q9HAW8 530 aa12.01□□□□□ -0.49
SHMT2-212ENST00000554467 UGT1A8Q9HAW9 530 aa12.01□□□□□ -0.49
SHMT2-212ENST00000554467 SLC17A6Q9P2U8 582 aa12.01□□□□□ -0.49
SHMT2-212ENST00000554467 TEX264Q9Y6I9 313 aa12.01□□□□□ -0.49
SHMT2-212ENST00000554467 E7ESA3 106 aa12.01□□□□□ -0.49
SHMT2-212ENST00000554467 CHADO15335 359 aa12.01□□□□□ -0.49
SHMT2-212ENST00000554467 DGKIO75912 1065 aa12.01□□□□□ -0.49
SHMT2-212ENST00000554467 LUC7L3O95232 432 aaKnown RBP12.01□□□□□ -0.49
SHMT2-212ENST00000554467 F7P08709 466 aaPredicted RBP12.01□□□□□ -0.49
SHMT2-212ENST00000554467 SKIP12755 728 aa12.01□□□□□ -0.49
SHMT2-212ENST00000554467 SELPP16109 830 aa12.01□□□□□ -0.49
SHMT2-212ENST00000554467 PSMB4P28070 264 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 86.8 ms