RNA–Protein interactions for RNA: ENST00000553683.1

VRK1-202, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 247 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-202ENST00000553683 ABHD14AQ9BUJ0 271 aa3.73□□□□□ -1.81
VRK1-202ENST00000553683 CCDC134Q9H6E4 229 aa3.73□□□□□ -1.81
VRK1-202ENST00000553683 OBP2BQ9NPH6 170 aa3.73□□□□□ -1.81
VRK1-202ENST00000553683 PLCB1Q9NQ66 1216 aa3.73□□□□□ -1.81
VRK1-202ENST00000553683 DECR2Q9NUI1 292 aa3.73□□□□□ -1.81
VRK1-202ENST00000553683 CDC23Q9UJX2 597 aa3.73□□□□□ -1.81
VRK1-202ENST00000553683 PCDHA12Q9UN75 941 aa3.73□□□□□ -1.81
VRK1-202ENST00000553683 TTC3P53804 2025 aa3.72□□□□□ -1.81
VRK1-202ENST00000553683 TBC1D3DA0A087WVF3 549 aa3.72□□□□□ -1.81
VRK1-202ENST00000553683 TBC1D3IA0A087WXS9 549 aa3.72□□□□□ -1.81
VRK1-202ENST00000553683 TBC1D3EA0A087X179 549 aa3.72□□□□□ -1.81
VRK1-202ENST00000553683 TBC1D3KA0A087X1G2 549 aa3.72□□□□□ -1.81
VRK1-202ENST00000553683 IGLV5-39A0A0G2JS06 123 aa3.72□□□□□ -1.81
VRK1-202ENST00000553683 DPPA5A6NC42 116 aa3.72□□□□□ -1.81
VRK1-202ENST00000553683 TBC1D3BA6NDS4 549 aa3.72□□□□□ -1.81
VRK1-202ENST00000553683 TBC1D3FA6NER0 549 aaPredicted RBP3.72□□□□□ -1.81
VRK1-202ENST00000553683 GAGE12JA6NER3 117 aa3.72□□□□□ -1.81
VRK1-202ENST00000553683 SLC38A8A6NNN8 435 aa3.72□□□□□ -1.81
VRK1-202ENST00000553683 KCNJ18B7U540 433 aa3.72□□□□□ -1.81
VRK1-202ENST00000553683 TBC1D3LB9A6J9 549 aa3.72□□□□□ -1.81
VRK1-202ENST00000553683 SPTLC2O15270 562 aa3.72□□□□□ -1.81
VRK1-202ENST00000553683 INSIG1O15503 277 aa3.72□□□□□ -1.81
VRK1-202ENST00000553683 TBC1D3HP0C7X1 549 aa3.72□□□□□ -1.81
VRK1-202ENST00000553683 KLRK1P26718 216 aa3.72□□□□□ -1.81
VRK1-202ENST00000553683 PDIA3P30101 505 aaKnown RBP3.72□□□□□ -1.81
VRK1-202ENST00000553683 STAT1P42224 750 aa3.72□□□□□ -1.81
VRK1-202ENST00000553683 ADPRHP54922 357 aa3.72□□□□□ -1.81
VRK1-202ENST00000553683 KRTAP1-1Q07627 177 aa3.72□□□□□ -1.81
VRK1-202ENST00000553683 SF3A3Q12874 501 aaKnown RBP eCLIP3.72□□□□□ -1.81
VRK1-202ENST00000553683 GPR162Q16538 588 aa3.72□□□□□ -1.81
VRK1-202ENST00000553683 KIAA1755Q5JYT7 1200 aa3.72□□□□□ -1.81
VRK1-202ENST00000553683 PIK3CD-AS1Q5SR53 167 aa3.72□□□□□ -1.81
VRK1-202ENST00000553683 TTC39AQ5SRH9 613 aa3.72□□□□□ -1.81
VRK1-202ENST00000553683 MANEAQ5SRI9 462 aa3.72□□□□□ -1.81
VRK1-202ENST00000553683 VWA5B1Q5TIE3 1220 aa3.72□□□□□ -1.81
VRK1-202ENST00000553683 TBC1D3GQ6DHY5 549 aa3.72□□□□□ -1.81
VRK1-202ENST00000553683 TBC1D3CQ6IPX1 549 aa3.72□□□□□ -1.81
VRK1-202ENST00000553683 IRF2BP2Q7Z5L9 587 aa3.72□□□□□ -1.81
VRK1-202ENST00000553683 SLC44A2Q8IWA5 706 aaPredicted RBP3.72□□□□□ -1.81
VRK1-202ENST00000553683 ADGRF4Q8IZF3 695 aa3.72□□□□□ -1.81
VRK1-202ENST00000553683 TBC1D3Q8IZP1 549 aaPredicted RBP3.72□□□□□ -1.81
VRK1-202ENST00000553683 ENDOVQ8N8Q3 282 aaKnown RBP3.72□□□□□ -1.81
VRK1-202ENST00000553683 SLC2A12Q8TD20 617 aa3.72□□□□□ -1.81
VRK1-202ENST00000553683 NSMCE1Q8WV22 266 aa3.72□□□□□ -1.81
VRK1-202ENST00000553683 CENPIQ92674 756 aaPredicted RBP3.72□□□□□ -1.81
VRK1-202ENST00000553683 ZNF347Q96SE7 839 aa3.72□□□□□ -1.81
VRK1-202ENST00000553683 RMDN3Q96TC7 470 aa3.72□□□□□ -1.81
VRK1-202ENST00000553683 SCNM1Q9BWG6 230 aa3.72□□□□□ -1.81
VRK1-202ENST00000553683 FOXP1Q9H334 677 aaPredicted RBP3.72□□□□□ -1.81
VRK1-202ENST00000553683 FZD3Q9NPG1 666 aa3.72□□□□□ -1.81
VRK1-202ENST00000553683 PRDM8Q9NQV8 689 aa3.72□□□□□ -1.81
VRK1-202ENST00000553683 THSD1Q9NS62 852 aa3.72□□□□□ -1.81
VRK1-202ENST00000553683 C19orf53Q9UNZ5 99 aaPredicted RBP3.72□□□□□ -1.81
VRK1-202ENST00000553683 SLC12A4Q9UP95 1085 aa3.72□□□□□ -1.81
VRK1-202ENST00000553683 A0A0G2JK05 382 aa3.71□□□□□ -1.82
VRK1-202ENST00000553683 AQP12BA6NM10 295 aa3.71□□□□□ -1.82
VRK1-202ENST00000553683 LGALS16A8MUM7 142 aa3.71□□□□□ -1.82
VRK1-202ENST00000553683 MCIDASD6RGH6 385 aa3.71□□□□□ -1.82
VRK1-202ENST00000553683 HNRNPRO43390 633 aaKnown RBP3.71□□□□□ -1.82
VRK1-202ENST00000553683 ATG13O75143 517 aa3.71□□□□□ -1.82
VRK1-202ENST00000553683 ACTL6BO94805 426 aa3.71□□□□□ -1.82
VRK1-202ENST00000553683 KAT7O95251 611 aa3.71□□□□□ -1.82
VRK1-202ENST00000553683 TOMM40O96008 361 aa3.71□□□□□ -1.82
VRK1-202ENST00000553683 FGF2P09038 288 aa3.71□□□□□ -1.82
VRK1-202ENST00000553683 PCP4P48539 62 aa3.71□□□□□ -1.82
VRK1-202ENST00000553683 AP2B1P63010 937 aa3.71□□□□□ -1.82
VRK1-202ENST00000553683 GALNT1Q10472 559 aaPredicted RBP3.71□□□□□ -1.82
VRK1-202ENST00000553683 PGM5Q15124 567 aa3.71□□□□□ -1.82
VRK1-202ENST00000553683 C10orf76Q5T2E6 689 aa3.71□□□□□ -1.82
VRK1-202ENST00000553683 TTC22Q5TAA0 569 aa3.71□□□□□ -1.82
VRK1-202ENST00000553683 ANKRD40Q6AI12 368 aa3.71□□□□□ -1.82
VRK1-202ENST00000553683 TRAPPC11Q7Z392 1133 aa3.71□□□□□ -1.82
VRK1-202ENST00000553683 TECPR1Q7Z6L1 1165 aa3.71□□□□□ -1.82
VRK1-202ENST00000553683 SPICE1Q8N0Z3 855 aa3.71□□□□□ -1.82
VRK1-202ENST00000553683 STYXQ8WUJ0 223 aa3.71□□□□□ -1.82
VRK1-202ENST00000553683 CPT1BQ92523 772 aa3.71□□□□□ -1.82
VRK1-202ENST00000553683 ZBTB9Q96C00 473 aa3.71□□□□□ -1.82
VRK1-202ENST00000553683 SDCCAG3Q96C92 435 aa3.71□□□□□ -1.82
VRK1-202ENST00000553683 MSI2Q96DH6 328 aaKnown RBP3.71□□□□□ -1.82
VRK1-202ENST00000553683 MCRS1Q96EZ8 462 aa3.71□□□□□ -1.82
VRK1-202ENST00000553683 DDX23Q9BUQ8 820 aaKnown RBP3.71□□□□□ -1.82
VRK1-202ENST00000553683 TMEM120AQ9BXJ8 343 aa3.71□□□□□ -1.82
VRK1-202ENST00000553683 PABPC3Q9H361 631 aaKnown RBP3.71□□□□□ -1.82
VRK1-202ENST00000553683 RNF146Q9NTX7 359 aa3.71□□□□□ -1.82
VRK1-202ENST00000553683 MSRB1Q9NZV6 116 aa3.71□□□□□ -1.82
VRK1-202ENST00000553683 NDUFAF4Q9P032 175 aa3.71□□□□□ -1.82
VRK1-202ENST00000553683 TRPC5Q9UL62 973 aaPredicted RBP3.71□□□□□ -1.82
VRK1-202ENST00000553683 TNFSF13BQ9Y275 285 aa3.71□□□□□ -1.82
VRK1-202ENST00000553683 DTX4Q9Y2E6 619 aa3.71□□□□□ -1.82
VRK1-202ENST00000553683 COPG1Q9Y678 874 aaKnown RBP3.71□□□□□ -1.82
VRK1-202ENST00000553683 KIF28PB7ZC32 967 aa3.7□□□□□ -1.82
VRK1-202ENST00000553683 UGDHO60701 494 aa3.7□□□□□ -1.82
VRK1-202ENST00000553683 ZC3H11AO75152 810 aaKnown RBP eCLIP3.7□□□□□ -1.82
VRK1-202ENST00000553683 EPN2O95208 641 aa3.7□□□□□ -1.82
VRK1-202ENST00000553683 IFNA2P01563 188 aa3.7□□□□□ -1.82
VRK1-202ENST00000553683 KLKB1P03952 638 aa3.7□□□□□ -1.82
VRK1-202ENST00000553683 CSTBP04080 98 aaKnown RBP3.7□□□□□ -1.82
VRK1-202ENST00000553683 ALDOCP09972 364 aaKnown RBP3.7□□□□□ -1.82
VRK1-202ENST00000553683 PSG1P11464 419 aa3.7□□□□□ -1.82
VRK1-202ENST00000553683 HOXB9P17482 250 aaPredicted RBP3.7□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms