RNA–Protein interactions for RNA: ENST00000545889.5

CLIP1-218, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5 BASIC

Gene CLIP1, Length 4,633 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-218ENST00000545889 WDR49Q8IV35 697 aa8.81□□□□□ -1
CLIP1-218ENST00000545889 SYTL1Q8IYJ3 562 aa8.81□□□□□ -1
CLIP1-218ENST00000545889 LGI2Q8N0V4 545 aa8.81□□□□□ -1
CLIP1-218ENST00000545889 FEZF2Q8TBJ5 459 aa8.81□□□□□ -1
CLIP1-218ENST00000545889 NIFKQ9BYG3 293 aaKnown RBP8.81□□□□□ -1
CLIP1-218ENST00000545889 CDT1Q9H211 546 aa8.81□□□□□ -1
CLIP1-218ENST00000545889 EXO5Q9H790 373 aa8.81□□□□□ -1
CLIP1-218ENST00000545889 EML4Q9HC35 981 aaKnown RBP8.81□□□□□ -1
CLIP1-218ENST00000545889 GON4LQ3T8J9 2241 aa8.81□□□□□ -1
CLIP1-218ENST00000545889 KIAA1551Q9HCM1 1747 aa8.81□□□□□ -1
CLIP1-218ENST00000545889 LACTBL1A8MY62 500 aa8.81□□□□□ -1
CLIP1-218ENST00000545889 JCHAINP01591 159 aa8.81□□□□□ -1
CLIP1-218ENST00000545889 LINGO3P0C6S8 592 aa8.81□□□□□ -1
CLIP1-218ENST00000545889 OR1D2P34982 312 aa8.81□□□□□ -1
CLIP1-218ENST00000545889 RENBPP51606 427 aa8.81□□□□□ -1
CLIP1-218ENST00000545889 UBXN2BQ14CS0 331 aa8.81□□□□□ -1
CLIP1-218ENST00000545889 RFWD2Q8NHY2 731 aa8.81□□□□□ -1
CLIP1-218ENST00000545889 MAGEC3Q8TD91 643 aa8.81□□□□□ -1
CLIP1-218ENST00000545889 BTN2A2Q8WVV5 523 aa8.81□□□□□ -1
CLIP1-218ENST00000545889 TMEM159Q96B96 161 aa8.81□□□□□ -1
CLIP1-218ENST00000545889 CYTH2Q99418 400 aa8.81□□□□□ -1
CLIP1-218ENST00000545889 PCYT2Q99447 389 aa8.81□□□□□ -1
CLIP1-218ENST00000545889 SH3GL2Q99962 352 aa8.81□□□□□ -1
CLIP1-218ENST00000545889 OSBPL8Q9BZF1 889 aa8.81□□□□□ -1
CLIP1-218ENST00000545889 ACP6Q9NPH0 428 aa8.81□□□□□ -1
CLIP1-218ENST00000545889 NDRG2Q9UN36 371 aaKnown RBP8.81□□□□□ -1
CLIP1-218ENST00000545889 ATMINO43313 823 aaPredicted RBP8.81□□□□□ -1
CLIP1-218ENST00000545889 VPS26AO75436 327 aa8.81□□□□□ -1
CLIP1-218ENST00000545889 SRP72O76094 671 aaKnown RBP8.81□□□□□ -1
CLIP1-218ENST00000545889 IL1BP01584 269 aa8.81□□□□□ -1
CLIP1-218ENST00000545889 MSH3P20585 1137 aa8.81□□□□□ -1
CLIP1-218ENST00000545889 SPRP35270 261 aaPredicted RBP8.81□□□□□ -1
CLIP1-218ENST00000545889 POU4F1Q01851 419 aa8.81□□□□□ -1
CLIP1-218ENST00000545889 CDC16Q13042 620 aa8.81□□□□□ -1
CLIP1-218ENST00000545889 MARC1Q5VT66 337 aa8.81□□□□□ -1
CLIP1-218ENST00000545889 PSRC1Q6PGN9 363 aaPredicted RBP8.81□□□□□ -1
CLIP1-218ENST00000545889 NT5DC3Q86UY8 548 aa8.81□□□□□ -1
CLIP1-218ENST00000545889 MCOLN3Q8TDD5 553 aa8.81□□□□□ -1
CLIP1-218ENST00000545889 TMEM176AQ96HP8 235 aa8.81□□□□□ -1
CLIP1-218ENST00000545889 VPS50Q96JG6 964 aa8.81□□□□□ -1
CLIP1-218ENST00000545889 NLNQ9BYT8 704 aa8.81□□□□□ -1
CLIP1-218ENST00000545889 NT5MQ9NPB1 228 aa8.81□□□□□ -1
CLIP1-218ENST00000545889 SOHLH2Q9NX45 425 aa8.81□□□□□ -1
CLIP1-218ENST00000545889 DYRK1BQ9Y463 629 aa8.81□□□□□ -1
CLIP1-218ENST00000545889 CENPAP49450 140 aa8.81□□□□□ -1
CLIP1-218ENST00000545889 TMED10P49755 219 aaKnown RBP8.81□□□□□ -1
CLIP1-218ENST00000545889 CDH8P55286 799 aa8.81□□□□□ -1
CLIP1-218ENST00000545889 TCEA2Q15560 299 aa8.81□□□□□ -1
CLIP1-218ENST00000545889 TRADDQ15628 312 aa8.81□□□□□ -1
CLIP1-218ENST00000545889 QPCTQ16769 361 aa8.81□□□□□ -1
CLIP1-218ENST00000545889 CLEC16AQ2KHT3 1053 aa8.81□□□□□ -1
CLIP1-218ENST00000545889 KRT80Q6KB66 452 aa8.81□□□□□ -1
CLIP1-218ENST00000545889 FAM228AQ86W67 206 aa8.81□□□□□ -1
CLIP1-218ENST00000545889 OR5B17Q8NGF7 314 aa8.81□□□□□ -1
CLIP1-218ENST00000545889 DTX3LQ8TDB6 740 aa8.81□□□□□ -1
CLIP1-218ENST00000545889 LPPQ93052 612 aa8.81□□□□□ -1
CLIP1-218ENST00000545889 GOLPH3Q9H4A6 298 aa8.81□□□□□ -1
CLIP1-218ENST00000545889 FLRT1Q9NZU1 646 aa8.81□□□□□ -1
CLIP1-218ENST00000545889 PTCH2Q9Y6C5 1203 aa8.81□□□□□ -1
CLIP1-218ENST00000545889 SSC5DA1L4H1 1573 aa8.8□□□□□ -1
CLIP1-218ENST00000545889 CCDC195A0A1B0GUA6 201 aa8.8□□□□□ -1
CLIP1-218ENST00000545889 KANSL1LA0AUZ9 987 aa8.8□□□□□ -1
CLIP1-218ENST00000545889 NCK2O43639 380 aa8.8□□□□□ -1
CLIP1-218ENST00000545889 CLASP2O75122 1294 aaKnown RBP8.8□□□□□ -1
CLIP1-218ENST00000545889 CRTAMO95727 393 aa8.8□□□□□ -1
CLIP1-218ENST00000545889 KITP10721 976 aa8.8□□□□□ -1
CLIP1-218ENST00000545889 EDNRBP24530 442 aa8.8□□□□□ -1
CLIP1-218ENST00000545889 CENPCQ03188 943 aa8.8□□□□□ -1
CLIP1-218ENST00000545889 TLE2Q04725 743 aa8.8□□□□□ -1
CLIP1-218ENST00000545889 MIIPQ5JXC2 388 aa8.8□□□□□ -1
CLIP1-218ENST00000545889 CRELD2Q6UXH1 353 aaPredicted RBP8.8□□□□□ -1
CLIP1-218ENST00000545889 ARHGEF19Q8IW93 802 aa8.8□□□□□ -1
CLIP1-218ENST00000545889 HIPK4Q8NE63 616 aa8.8□□□□□ -1
CLIP1-218ENST00000545889 ACO2Q99798 780 aaKnown RBP8.8□□□□□ -1
CLIP1-218ENST00000545889 XRN2Q9H0D6 950 aaKnown RBP eCLIP8.8□□□□□ -1
CLIP1-218ENST00000545889 CISHQ9NSE2 258 aa8.8□□□□□ -1
CLIP1-218ENST00000545889 TRMT13Q9NUP7 481 aaKnown RBP8.8□□□□□ -1
CLIP1-218ENST00000545889 CLDND1Q9NY35 253 aa8.8□□□□□ -1
CLIP1-218ENST00000545889 SPATA7Q9P0W8 599 aa8.8□□□□□ -1
CLIP1-218ENST00000545889 NIPSNAP3AQ9UFN0 247 aaPredicted RBP8.8□□□□□ -1
CLIP1-218ENST00000545889 ADGRA3Q8IWK6 1321 aa8.8□□□□□ -1
CLIP1-218ENST00000545889 DNAJC25-GNG10A0A024R161 153 aa8.8□□□□□ -1
CLIP1-218ENST00000545889 A0A087X0T9 212 aa8.8□□□□□ -1
CLIP1-218ENST00000545889 SOAT2O75908 522 aa8.8□□□□□ -1
CLIP1-218ENST00000545889 SGPL1O95470 568 aa8.8□□□□□ -1
CLIP1-218ENST00000545889 DNTTP04053 509 aa8.8□□□□□ -1
CLIP1-218ENST00000545889 FAM228BP0C875 321 aa8.8□□□□□ -1
CLIP1-218ENST00000545889 ARL2P36404 184 aa8.8□□□□□ -1
CLIP1-218ENST00000545889 GLUD2P49448 558 aa8.8□□□□□ -1
CLIP1-218ENST00000545889 USP46P62068 366 aa8.8□□□□□ -1
CLIP1-218ENST00000545889 LRRC14Q15048 493 aa8.8□□□□□ -1
CLIP1-218ENST00000545889 TMEM86AQ8N2M4 240 aa8.8□□□□□ -1
CLIP1-218ENST00000545889 TFB1MQ8WVM0 346 aaKnown RBP8.8□□□□□ -1
CLIP1-218ENST00000545889 WDR60Q8WVS4 1066 aa8.8□□□□□ -1
CLIP1-218ENST00000545889 NMD3Q96D46 503 aaKnown RBP8.8□□□□□ -1
CLIP1-218ENST00000545889 C11orf84Q9BUA3 381 aaPredicted RBP8.8□□□□□ -1
CLIP1-218ENST00000545889 NDEL1Q9GZM8 345 aa8.8□□□□□ -1
CLIP1-218ENST00000545889 NSMCE4AQ9NXX6 385 aa8.8□□□□□ -1
CLIP1-218ENST00000545889 RRN3Q9NYV6 651 aa8.8□□□□□ -1
CLIP1-218ENST00000545889 ATXN10Q9UBB4 475 aa8.8□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 57 ms