RNA–Protein interactions for RNA: ENST00000544504.5

YBX3-215, Transcript of Y-box binding protein 3, human

TSL 3

Gene YBX3, Length 583 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-215	ENST00000544504	AVPR1A	P37288	418 aa		9.83	□□□□□ -0.84
YBX3-215	ENST00000544504	CDKN2B	P42772	138 aa		9.83	□□□□□ -0.84
YBX3-215	ENST00000544504	PGF	P49763	221 aa		9.83	□□□□□ -0.84
YBX3-215	ENST00000544504	ARSE	P51690	589 aa		9.83	□□□□□ -0.84
YBX3-215	ENST00000544504	PITX1	P78337	314 aa	Predicted RBP	9.83	□□□□□ -0.84
YBX3-215	ENST00000544504	PPP6R3	Q5H9R7	873 aa	Predicted RBP	9.83	□□□□□ -0.84
YBX3-215	ENST00000544504	KCNT1	Q5JUK3	1230 aa		9.83	□□□□□ -0.84
YBX3-215	ENST00000544504	GPR158	Q5T848	1215 aa		9.83	□□□□□ -0.84
YBX3-215	ENST00000544504	DCAF12L1	Q5VU92	463 aa		9.83	□□□□□ -0.84
YBX3-215	ENST00000544504	DAB2IP	Q5VWQ8	1189 aa		9.83	□□□□□ -0.84
YBX3-215	ENST00000544504	CCDC70	Q6NSX1	233 aa		9.83	□□□□□ -0.84
YBX3-215	ENST00000544504	CYP4V2	Q6ZWL3	525 aa	Predicted RBP	9.83	□□□□□ -0.84
YBX3-215	ENST00000544504	ZNF572	Q7Z3I7	529 aa	Predicted RBP	9.83	□□□□□ -0.84
YBX3-215	ENST00000544504	GRASP	Q7Z6J2	395 aa	Predicted RBP	9.83	□□□□□ -0.84
YBX3-215	ENST00000544504	CTAGE6	Q86UF2	777 aa		9.83	□□□□□ -0.84
YBX3-215	ENST00000544504	CPNE8	Q86YQ8	564 aa		9.83	□□□□□ -0.84
YBX3-215	ENST00000544504	SLC13A5	Q86YT5	568 aa	Predicted RBP	9.83	□□□□□ -0.84
YBX3-215	ENST00000544504	CTAGE4	Q8IX94	777 aa		9.83	□□□□□ -0.84
YBX3-215	ENST00000544504	CCDC185	Q8N715	623 aa		9.83	□□□□□ -0.84
YBX3-215	ENST00000544504	KIAA1958	Q8N8K9	716 aa		9.83	□□□□□ -0.84
YBX3-215	ENST00000544504	SHKBP1	Q8TBC3	707 aa		9.83	□□□□□ -0.84
YBX3-215	ENST00000544504	COG1	Q8WTW3	980 aa		9.83	□□□□□ -0.84
YBX3-215	ENST00000544504	NXPE3	Q969Y0	559 aa		9.83	□□□□□ -0.84
YBX3-215	ENST00000544504	RNF25	Q96BH1	459 aa	Predicted RBP	9.83	□□□□□ -0.84
YBX3-215	ENST00000544504	CAPZA3	Q96KX2	299 aa		9.83	□□□□□ -0.84
YBX3-215	ENST00000544504	KLF16	Q9BXK1	252 aa	Predicted RBP	9.83	□□□□□ -0.84
YBX3-215	ENST00000544504	SLITRK6	Q9H5Y7	841 aa		9.83	□□□□□ -0.84
YBX3-215	ENST00000544504	KIF9	Q9HAQ2	790 aa		9.83	□□□□□ -0.84
YBX3-215	ENST00000544504	OR12D3	Q9UGF7	316 aa		9.83	□□□□□ -0.84
YBX3-215	ENST00000544504	NUDT5	Q9UKK9	219 aa		9.83	□□□□□ -0.84
YBX3-215	ENST00000544504	CA14	Q9ULX7	337 aa		9.83	□□□□□ -0.84
YBX3-215	ENST00000544504	MAP1B	P46821	2468 aa	Known RBP	9.83	□□□□□ -0.84
YBX3-215	ENST00000544504	FRY	Q5TBA9	3013 aa		9.83	□□□□□ -0.84
YBX3-215	ENST00000544504	hCG_1818297	A0A087WSY0	165 aa		9.82	□□□□□ -0.84
YBX3-215	ENST00000544504	DCDC2B	A2VCK2	349 aa		9.82	□□□□□ -0.84
YBX3-215	ENST00000544504	C2orf78	A6NCI8	922 aa		9.82	□□□□□ -0.84
YBX3-215	ENST00000544504	EEF2K	O00418	725 aa	Known RBP	9.82	□□□□□ -0.84
YBX3-215	ENST00000544504	KRIT1	O00522	736 aa		9.82	□□□□□ -0.84
YBX3-215	ENST00000544504	FGF10	O15520	208 aa	Predicted RBP	9.82	□□□□□ -0.84
YBX3-215	ENST00000544504	DAPK3	O43293	454 aa		9.82	□□□□□ -0.84
YBX3-215	ENST00000544504	ACSL4	O60488	711 aa		9.82	□□□□□ -0.84
YBX3-215	ENST00000544504	SRGAP2	O75044	1071 aa		9.82	□□□□□ -0.84
YBX3-215	ENST00000544504	PAGE1	O75459	146 aa		9.82	□□□□□ -0.84
YBX3-215	ENST00000544504	SLU7	O95391	586 aa	Known RBP	9.82	□□□□□ -0.84
YBX3-215	ENST00000544504	TBX18	O95935	607 aa		9.82	□□□□□ -0.84
YBX3-215	ENST00000544504	TCF3	P15923	654 aa		9.82	□□□□□ -0.84
YBX3-215	ENST00000544504	MLLT6	P55198	1093 aa	Predicted RBP	9.82	□□□□□ -0.84
YBX3-215	ENST00000544504	TPI1	P60174	286 aa		9.82	□□□□□ -0.84
YBX3-215	ENST00000544504	CYP4F8	P98187	520 aa		9.82	□□□□□ -0.84
YBX3-215	ENST00000544504	ZNF211	Q13398	564 aa	Predicted RBP	9.82	□□□□□ -0.84
YBX3-215	ENST00000544504	COL9A2	Q14055	689 aa	Predicted RBP	9.82	□□□□□ -0.84
YBX3-215	ENST00000544504	DPYSL3	Q14195	570 aa		9.82	□□□□□ -0.84
YBX3-215	ENST00000544504	ATP13A4	Q4VNC1	1196 aa		9.82	□□□□□ -0.84
YBX3-215	ENST00000544504	PRSS36	Q5K4E3	855 aa		9.82	□□□□□ -0.84
YBX3-215	ENST00000544504	TXNDC8	Q6A555	127 aa		9.82	□□□□□ -0.84
YBX3-215	ENST00000544504	TXNRD3NB	Q6F5E7	133 aa		9.82	□□□□□ -0.84
YBX3-215	ENST00000544504	MFSD7	Q6UXD7	560 aa		9.82	□□□□□ -0.84
YBX3-215	ENST00000544504	BBS12	Q6ZW61	710 aa		9.82	□□□□□ -0.84
YBX3-215	ENST00000544504	RFX6	Q8HWS3	928 aa		9.82	□□□□□ -0.84
YBX3-215	ENST00000544504	CMTM8	Q8IZV2	173 aa		9.82	□□□□□ -0.84
YBX3-215	ENST00000544504	SLC44A3	Q8N4M1	653 aa		9.82	□□□□□ -0.84
YBX3-215	ENST00000544504	MAB21L3	Q8N8X9	362 aa		9.82	□□□□□ -0.84
YBX3-215	ENST00000544504	RAPGEF5	Q92565	580 aa		9.82	□□□□□ -0.84
YBX3-215	ENST00000544504	FAF2	Q96CS3	445 aa		9.82	□□□□□ -0.84
YBX3-215	ENST00000544504	RNF157	Q96PX1	679 aa		9.82	□□□□□ -0.84
YBX3-215	ENST00000544504	ADAM33	Q9BZ11	813 aa		9.82	□□□□□ -0.84
YBX3-215	ENST00000544504	CATSPERB	Q9H7T0	1116 aa		9.82	□□□□□ -0.84
YBX3-215	ENST00000544504	ARHGEF3	Q9NR81	526 aa		9.82	□□□□□ -0.84
YBX3-215	ENST00000544504	HCFC1R1	Q9NWW0	138 aa		9.82	□□□□□ -0.84
YBX3-215	ENST00000544504	CALCOCO1	Q9P1Z2	691 aa		9.82	□□□□□ -0.84
YBX3-215	ENST00000544504	FEZ2	Q9UHY8	353 aa	Predicted RBP	9.82	□□□□□ -0.84
YBX3-215	ENST00000544504	FBXO4	Q9UKT5	387 aa		9.82	□□□□□ -0.84
YBX3-215	ENST00000544504	ARHGAP26	Q9UNA1	814 aa		9.82	□□□□□ -0.84
YBX3-215	ENST00000544504	PCDHGA2	Q9Y5H1	932 aa		9.82	□□□□□ -0.84
YBX3-215	ENST00000544504	RAD54B	Q9Y620	910 aa		9.82	□□□□□ -0.84
YBX3-215	ENST00000544504	ZFP37	Q9Y6Q3	630 aa	Predicted RBP	9.82	□□□□□ -0.84
YBX3-215	ENST00000544504	ANKRD11	Q6UB99	2663 aa	Predicted RBP	9.81	□□□□□ -0.84
YBX3-215	ENST00000544504	SPTBN2	O15020	2390 aa		9.81	□□□□□ -0.84
YBX3-215	ENST00000544504	E2F8	A0AVK6	867 aa		9.81	□□□□□ -0.84
YBX3-215	ENST00000544504	TYW5	A2RUC4	315 aa	Known RBP	9.81	□□□□□ -0.84
YBX3-215	ENST00000544504	C3orf70	A6NLC5	250 aa	Predicted RBP	9.81	□□□□□ -0.84
YBX3-215	ENST00000544504		F5H5T6	163 aa		9.81	□□□□□ -0.84
YBX3-215	ENST00000544504	APOC4-APOC2	K7ER74	178 aa		9.81	□□□□□ -0.84
YBX3-215	ENST00000544504	SLC9A3R1	O14745	358 aa	Predicted RBP	9.81	□□□□□ -0.84
YBX3-215	ENST00000544504	APOL1	O14791	398 aa		9.81	□□□□□ -0.84
YBX3-215	ENST00000544504	ZNF185	O15231	689 aa		9.81	□□□□□ -0.84
YBX3-215	ENST00000544504	CREB3	O43889	395 aa		9.81	□□□□□ -0.84
YBX3-215	ENST00000544504	STC2	O76061	302 aa		9.81	□□□□□ -0.84
YBX3-215	ENST00000544504	MOCS2	O96007	188 aa	Predicted RBP	9.81	□□□□□ -0.84
YBX3-215	ENST00000544504	APOC2	P02655	101 aa		9.81	□□□□□ -0.84
YBX3-215	ENST00000544504	HMBS	P08397	361 aa		9.81	□□□□□ -0.84
YBX3-215	ENST00000544504	TGM2	P21980	687 aa		9.81	□□□□□ -0.84
YBX3-215	ENST00000544504	FSHR	P23945	695 aa		9.81	□□□□□ -0.84
YBX3-215	ENST00000544504	SERPINB6	P35237	376 aa		9.81	□□□□□ -0.84
YBX3-215	ENST00000544504	NR2C2	P49116	596 aa		9.81	□□□□□ -0.84
YBX3-215	ENST00000544504	SEMA3B	Q13214	749 aa		9.81	□□□□□ -0.84
YBX3-215	ENST00000544504	RAB6C	Q53S08	254 aa		9.81	□□□□□ -0.84
YBX3-215	ENST00000544504	ANKRD20A8P	Q5CZ79	823 aa		9.81	□□□□□ -0.84
YBX3-215	ENST00000544504	RABGAP1L	Q5R372	815 aa		9.81	□□□□□ -0.84
YBX3-215	ENST00000544504	TTC39B	Q5VTQ0	682 aa	Predicted RBP	9.81	□□□□□ -0.84

Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms