RNA–Protein interactions for RNA: ENST00000540906.1

AP003559.1-201, humanhuman

TSL 3 BASIC

Gene AP003559.1, Length 1,831 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AP003559.1-201ENST00000540906 LILRB3O75022 631 aa12.62□□□□□ -0.39
AP003559.1-201ENST00000540906 CSPG5O95196 566 aa12.62□□□□□ -0.39
AP003559.1-201ENST00000540906 IGLV3-27P01718 113 aa12.62□□□□□ -0.39
AP003559.1-201ENST00000540906 PTPN3P26045 913 aa12.62□□□□□ -0.39
AP003559.1-201ENST00000540906 SSTR1P30872 391 aa12.62□□□□□ -0.39
AP003559.1-201ENST00000540906 KCNQ1P51787 676 aa12.62□□□□□ -0.39
AP003559.1-201ENST00000540906 MLLT6P55198 1093 aaPredicted RBP12.62□□□□□ -0.39
AP003559.1-201ENST00000540906 ARL4CP56559 192 aa12.62□□□□□ -0.39
AP003559.1-201ENST00000540906 MAGOHP61326 146 aaKnown RBP12.62□□□□□ -0.39
AP003559.1-201ENST00000540906 PPIDQ08752 370 aaKnown RBP12.62□□□□□ -0.39
AP003559.1-201ENST00000540906 CCDC38Q502W7 563 aa12.62□□□□□ -0.39
AP003559.1-201ENST00000540906 MS4A13Q5J8X5 152 aa12.62□□□□□ -0.39
AP003559.1-201ENST00000540906 TMEM240Q5SV17 173 aa12.62□□□□□ -0.39
AP003559.1-201ENST00000540906 NADSYN1Q6IA69 706 aa12.62□□□□□ -0.39
AP003559.1-201ENST00000540906 CENPUQ71F23 418 aa12.62□□□□□ -0.39
AP003559.1-201ENST00000540906 ARHGAP18Q8N392 663 aa12.62□□□□□ -0.39
AP003559.1-201ENST00000540906 FBXO36Q8NEA4 188 aa12.62□□□□□ -0.39
AP003559.1-201ENST00000540906 WBP2Q969T9 261 aa12.62□□□□□ -0.39
AP003559.1-201ENST00000540906 NOL6Q9H6R4 1146 aaKnown RBP12.62□□□□□ -0.39
AP003559.1-201ENST00000540906 PRDM16Q9HAZ2 1276 aa12.62□□□□□ -0.39
AP003559.1-201ENST00000540906 CHMP2BQ9UQN3 213 aa12.62□□□□□ -0.39
AP003559.1-201ENST00000540906 DOCK4Q8N1I0 1966 aa12.61□□□□□ -0.39
AP003559.1-201ENST00000540906 HMGB1P1B2RPK0 211 aaPredicted RBP12.61□□□□□ -0.39
AP003559.1-201ENST00000540906 NRG2O14511 850 aaPredicted RBP12.61□□□□□ -0.39
AP003559.1-201ENST00000540906 RASGRF2O14827 1237 aa12.61□□□□□ -0.39
AP003559.1-201ENST00000540906 TEX28O15482 410 aa12.61□□□□□ -0.39
AP003559.1-201ENST00000540906 TLR5O60602 858 aa12.61□□□□□ -0.39
AP003559.1-201ENST00000540906 CNTN5O94779 1100 aa12.61□□□□□ -0.39
AP003559.1-201ENST00000540906 APRTP07741 180 aa12.61□□□□□ -0.39
AP003559.1-201ENST00000540906 SYN1P17600 705 aa12.61□□□□□ -0.39
AP003559.1-201ENST00000540906 NR1D1P20393 614 aa12.61□□□□□ -0.39
AP003559.1-201ENST00000540906 PSMB4P28070 264 aa12.61□□□□□ -0.39
AP003559.1-201ENST00000540906 HPDP32754 393 aaPredicted RBP12.61□□□□□ -0.39
AP003559.1-201ENST00000540906 CD68P34810 354 aaPredicted RBP12.61□□□□□ -0.39
AP003559.1-201ENST00000540906 GARSP41250 739 aaKnown RBP12.61□□□□□ -0.39
AP003559.1-201ENST00000540906 ELK3P41970 407 aa12.61□□□□□ -0.39
AP003559.1-201ENST00000540906 TUBP50607 506 aa12.61□□□□□ -0.39
AP003559.1-201ENST00000540906 HTRA4P83105 476 aaPredicted RBP12.61□□□□□ -0.39
AP003559.1-201ENST00000540906 RAB33AQ14088 237 aa12.61□□□□□ -0.39
AP003559.1-201ENST00000540906 TRIP4Q15650 581 aaPredicted RBP12.61□□□□□ -0.39
AP003559.1-201ENST00000540906 ALFQ53S48 1182 aa12.61□□□□□ -0.39
AP003559.1-201ENST00000540906 TNFAIP8L3Q5GJ75 292 aa12.61□□□□□ -0.39
AP003559.1-201ENST00000540906 ARHGEF18Q6ZSZ5 1173 aa12.61□□□□□ -0.39
AP003559.1-201ENST00000540906 CIR1Q86X95 450 aaPredicted RBP12.61□□□□□ -0.39
AP003559.1-201ENST00000540906 MPP5Q8N3R9 675 aa12.61□□□□□ -0.39
AP003559.1-201ENST00000540906 IGSF8Q969P0 613 aa12.61□□□□□ -0.39
AP003559.1-201ENST00000540906 TBC1D31Q96DN5 1066 aa12.61□□□□□ -0.39
AP003559.1-201ENST00000540906 UBE2OQ9C0C9 1292 aaKnown RBP12.61□□□□□ -0.39
AP003559.1-201ENST00000540906 SLC39A8Q9C0K1 460 aa12.61□□□□□ -0.39
AP003559.1-201ENST00000540906 EURLQ9NYK6 297 aa12.61□□□□□ -0.39
AP003559.1-201ENST00000540906 VANGL2Q9ULK5 521 aa12.61□□□□□ -0.39
AP003559.1-201ENST00000540906 ANAPC1Q9H1A4 1944 aa12.61□□□□□ -0.39
AP003559.1-201ENST00000540906 ZNF840PA6NDX5 716 aa12.6□□□□□ -0.39
AP003559.1-201ENST00000540906 GOLGA6L10A6NI86 522 aa12.6□□□□□ -0.39
AP003559.1-201ENST00000540906 PPP1R12AO14974 1030 aaPredicted RBP12.6□□□□□ -0.39
AP003559.1-201ENST00000540906 EFCAB14O75071 495 aa12.6□□□□□ -0.39
AP003559.1-201ENST00000540906 FGF18O76093 207 aa12.6□□□□□ -0.39
AP003559.1-201ENST00000540906 ARHGEF15O94989 841 aa12.6□□□□□ -0.39
AP003559.1-201ENST00000540906 FGBP02675 491 aa12.6□□□□□ -0.39
AP003559.1-201ENST00000540906 URODP06132 367 aa12.6□□□□□ -0.39
AP003559.1-201ENST00000540906 ABHD2P08910 425 aa12.6□□□□□ -0.39
AP003559.1-201ENST00000540906 CREB1P16220 341 aa12.6□□□□□ -0.39
AP003559.1-201ENST00000540906 TUFMP49411 452 aaKnown RBP12.6□□□□□ -0.39
AP003559.1-201ENST00000540906 PLD1Q13393 1074 aa12.6□□□□□ -0.39
AP003559.1-201ENST00000540906 SEMA5AQ13591 1074 aa12.6□□□□□ -0.39
AP003559.1-201ENST00000540906 SPARCL1Q14515 664 aa12.6□□□□□ -0.39
AP003559.1-201ENST00000540906 RAP1GAP2Q684P5 730 aa12.6□□□□□ -0.39
AP003559.1-201ENST00000540906 NLRP14Q86W24 1093 aa12.6□□□□□ -0.39
AP003559.1-201ENST00000540906 C7orf61Q8IZ16 206 aa12.6□□□□□ -0.39
AP003559.1-201ENST00000540906 EXOC4Q96A65 974 aa12.6□□□□□ -0.39
AP003559.1-201ENST00000540906 HDAC11Q96DB2 347 aa12.6□□□□□ -0.39
AP003559.1-201ENST00000540906 ZBP1Q9H171 429 aa12.6□□□□□ -0.39
AP003559.1-201ENST00000540906 VPS37BQ9H9H4 285 aa12.6□□□□□ -0.39
AP003559.1-201ENST00000540906 PIH1D1Q9NWS0 290 aaKnown RBP12.6□□□□□ -0.39
AP003559.1-201ENST00000540906 COMMD8Q9NX08 183 aa12.6□□□□□ -0.39
AP003559.1-201ENST00000540906 ZKSCAN7Q9P0L1 754 aaPredicted RBP12.6□□□□□ -0.39
AP003559.1-201ENST00000540906 TEX264Q9Y6I9 313 aa12.6□□□□□ -0.39
AP003559.1-201ENST00000540906 DFFAO00273 331 aa12.6□□□□□ -0.39
AP003559.1-201ENST00000540906 ZBTB24O43167 697 aaPredicted RBP12.6□□□□□ -0.39
AP003559.1-201ENST00000540906 ACTN2P35609 894 aa12.6□□□□□ -0.39
AP003559.1-201ENST00000540906 MAGEA3P43357 314 aa12.6□□□□□ -0.39
AP003559.1-201ENST00000540906 SKOR1P84550 965 aa12.6□□□□□ -0.39
AP003559.1-201ENST00000540906 NRG1Q02297 640 aaPredicted RBP12.6□□□□□ -0.39
AP003559.1-201ENST00000540906 FPGSQ05932 587 aa12.6□□□□□ -0.39
AP003559.1-201ENST00000540906 TWF1Q12792 350 aa12.6□□□□□ -0.39
AP003559.1-201ENST00000540906 AFMIDQ63HM1 303 aa12.6□□□□□ -0.39
AP003559.1-201ENST00000540906 FBXL22Q6P050 247 aa12.6□□□□□ -0.39
AP003559.1-201ENST00000540906 KDM7AQ6ZMT4 941 aa12.6□□□□□ -0.39
AP003559.1-201ENST00000540906 BZW1Q7L1Q6 419 aaKnown RBP12.6□□□□□ -0.39
AP003559.1-201ENST00000540906 TMEM150AQ86TG1 271 aa12.6□□□□□ -0.39
AP003559.1-201ENST00000540906 KLHL23Q8NBE8 558 aa12.6□□□□□ -0.39
AP003559.1-201ENST00000540906 USP33Q8TEY7 942 aa12.6□□□□□ -0.39
AP003559.1-201ENST00000540906 PGM2Q96G03 612 aa12.6□□□□□ -0.39
AP003559.1-201ENST00000540906 PRMT1Q99873 361 aaKnown RBP12.6□□□□□ -0.39
AP003559.1-201ENST00000540906 ZNF334Q9HCZ1 680 aaPredicted RBP12.6□□□□□ -0.39
AP003559.1-201ENST00000540906 LAMA2P24043 3122 aaKnown RBP12.6□□□□□ -0.39
AP003559.1-201ENST00000540906 OBSL1O75147 1896 aa12.59□□□□□ -0.39
AP003559.1-201ENST00000540906 C2orf78A6NCI8 922 aa12.59□□□□□ -0.39
AP003559.1-201ENST00000540906 RGS16O15492 202 aaPredicted RBP12.59□□□□□ -0.39
AP003559.1-201ENST00000540906 COCHO43405 550 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms