RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 ASGR1P07306 291 aa11.04□□□□□ -0.64
CLIP1-213ENST00000540338 HMBSP08397 361 aa11.04□□□□□ -0.64
CLIP1-213ENST00000540338 ERVK-10P10266 1014 aa11.04□□□□□ -0.64
CLIP1-213ENST00000540338 PGM1P36871 562 aa11.04□□□□□ -0.64
CLIP1-213ENST00000540338 NCALDP61601 193 aa11.04□□□□□ -0.64
CLIP1-213ENST00000540338 RPL10AP62906 217 aaKnown RBP11.04□□□□□ -0.64
CLIP1-213ENST00000540338 BNIP1Q12981 228 aa11.04□□□□□ -0.64
CLIP1-213ENST00000540338 SEMA5AQ13591 1074 aa11.04□□□□□ -0.64
CLIP1-213ENST00000540338 MGAT5BQ3V5L5 792 aa11.04□□□□□ -0.64
CLIP1-213ENST00000540338 ARCQ7LC44 396 aa11.04□□□□□ -0.64
CLIP1-213ENST00000540338 KBTBD7Q8WVZ9 684 aa11.04□□□□□ -0.64
CLIP1-213ENST00000540338 IFT43Q96FT9 208 aa11.04□□□□□ -0.64
CLIP1-213ENST00000540338 RMDN2Q96LZ7 410 aa11.04□□□□□ -0.64
CLIP1-213ENST00000540338 IARS2Q9NSE4 1012 aaKnown RBP11.04□□□□□ -0.64
CLIP1-213ENST00000540338 CACNG4Q9UBN1 327 aa11.04□□□□□ -0.64
CLIP1-213ENST00000540338 B2RBV5 119 aa11.04□□□□□ -0.64
CLIP1-213ENST00000540338 C2CD2LO14523 706 aa11.04□□□□□ -0.64
CLIP1-213ENST00000540338 SEPT4O43236 478 aa11.04□□□□□ -0.64
CLIP1-213ENST00000540338 CABYRO75952 493 aa11.04□□□□□ -0.64
CLIP1-213ENST00000540338 GRK2P25098 689 aa11.04□□□□□ -0.64
CLIP1-213ENST00000540338 PTPN4P29074 926 aa11.04□□□□□ -0.64
CLIP1-213ENST00000540338 AQP5P55064 265 aa11.04□□□□□ -0.64
CLIP1-213ENST00000540338 KCNJ2P63252 427 aa11.04□□□□□ -0.64
CLIP1-213ENST00000540338 PCSK7Q16549 785 aa11.04□□□□□ -0.64
CLIP1-213ENST00000540338 TAZQ16635 292 aa11.04□□□□□ -0.64
CLIP1-213ENST00000540338 CTXN3Q4LDR2 81 aa11.04□□□□□ -0.64
CLIP1-213ENST00000540338 HSP90AA5PQ58FG0 334 aa11.04□□□□□ -0.64
CLIP1-213ENST00000540338 ATP6V0D2Q8N8Y2 350 aa11.04□□□□□ -0.64
CLIP1-213ENST00000540338 SMG8Q8ND04 991 aaKnown RBP11.04□□□□□ -0.64
CLIP1-213ENST00000540338 ACMSDQ8TDX5 336 aa11.04□□□□□ -0.64
CLIP1-213ENST00000540338 CERS2Q96G23 380 aa11.04□□□□□ -0.64
CLIP1-213ENST00000540338 SEPT5Q99719 369 aaPredicted RBP11.04□□□□□ -0.64
CLIP1-213ENST00000540338 ACBD6Q9BR61 282 aa11.04□□□□□ -0.64
CLIP1-213ENST00000540338 SAR1AQ9NR31 198 aa11.04□□□□□ -0.64
CLIP1-213ENST00000540338 RBM22Q9NW64 420 aaKnown RBP eCLIP11.04□□□□□ -0.64
CLIP1-213ENST00000540338 TKTP29401 623 aaKnown RBP11.04□□□□□ -0.64
CLIP1-213ENST00000540338 TUBP50607 506 aa11.04□□□□□ -0.64
CLIP1-213ENST00000540338 PRAMEP78395 509 aa11.04□□□□□ -0.64
CLIP1-213ENST00000540338 SLC39A12Q504Y0 691 aa11.04□□□□□ -0.64
CLIP1-213ENST00000540338 TRIM68Q6AZZ1 485 aa11.04□□□□□ -0.64
CLIP1-213ENST00000540338 CCNYL1Q8N7R7 359 aa11.04□□□□□ -0.64
CLIP1-213ENST00000540338 TTC8Q8TAM2 541 aa11.04□□□□□ -0.64
CLIP1-213ENST00000540338 SERAC1Q96JX3 654 aa11.04□□□□□ -0.64
CLIP1-213ENST00000540338 FBXO44Q9H4M3 255 aa11.04□□□□□ -0.64
CLIP1-213ENST00000540338 THAP1Q9NVV9 213 aa11.04□□□□□ -0.64
CLIP1-213ENST00000540338 G3BP2Q9UN86 482 aaKnown RBP11.04□□□□□ -0.64
CLIP1-213ENST00000540338 GPC4O75487 556 aa11.04□□□□□ -0.64
CLIP1-213ENST00000540338 CRCPO75575 148 aa11.04□□□□□ -0.64
CLIP1-213ENST00000540338 CBX6O95503 412 aa11.04□□□□□ -0.64
CLIP1-213ENST00000540338 CPA3P15088 417 aa11.04□□□□□ -0.64
CLIP1-213ENST00000540338 DNAJB2P25686 324 aa11.04□□□□□ -0.64
CLIP1-213ENST00000540338 SERPINB3P29508 390 aa11.04□□□□□ -0.64
CLIP1-213ENST00000540338 SKIV2L2P42285 1042 aaKnown RBP11.04□□□□□ -0.64
CLIP1-213ENST00000540338 PAPOLAP51003 745 aaKnown RBP11.04□□□□□ -0.64
CLIP1-213ENST00000540338 CRHR2Q13324 411 aa11.04□□□□□ -0.64
CLIP1-213ENST00000540338 TAF11Q15544 211 aa11.04□□□□□ -0.64
CLIP1-213ENST00000540338 TIGD5Q53EQ6 642 aa11.04□□□□□ -0.64
CLIP1-213ENST00000540338 C10orf120Q5SQS8 335 aa11.04□□□□□ -0.64
CLIP1-213ENST00000540338 PRPF39Q86UA1 669 aaKnown RBP11.04□□□□□ -0.64
CLIP1-213ENST00000540338 IGDCC3Q8IVU1 814 aa11.04□□□□□ -0.64
CLIP1-213ENST00000540338 FAM161BQ96MY7 647 aa11.04□□□□□ -0.64
CLIP1-213ENST00000540338 SERPINB11Q96P15 392 aa11.04□□□□□ -0.64
CLIP1-213ENST00000540338 STOML1Q9UBI4 398 aa11.04□□□□□ -0.64
CLIP1-213ENST00000540338 PLLPQ9Y342 182 aa11.04□□□□□ -0.64
CLIP1-213ENST00000540338 PCDHB7Q9Y5E2 793 aa11.04□□□□□ -0.64
CLIP1-213ENST00000540338 PFDN6O15212 129 aa11.03□□□□□ -0.64
CLIP1-213ENST00000540338 ENDOD1O94919 500 aa11.03□□□□□ -0.64
CLIP1-213ENST00000540338 MYCP01106 439 aaPredicted RBP11.03□□□□□ -0.64
CLIP1-213ENST00000540338 RALBP11234 206 aa11.03□□□□□ -0.64
CLIP1-213ENST00000540338 PRKAR2AP13861 404 aaKnown RBP11.03□□□□□ -0.64
CLIP1-213ENST00000540338 NFKB1P19838 968 aa11.03□□□□□ -0.64
CLIP1-213ENST00000540338 RABGGTBP53611 331 aa11.03□□□□□ -0.64
CLIP1-213ENST00000540338 CCDC15Q0P6D6 951 aa11.03□□□□□ -0.64
CLIP1-213ENST00000540338 KCNA10Q16322 511 aa11.03□□□□□ -0.64
CLIP1-213ENST00000540338 MAP7D1Q3KQU3 841 aa11.03□□□□□ -0.64
CLIP1-213ENST00000540338 TNFAIP8L3Q5GJ75 292 aa11.03□□□□□ -0.64
CLIP1-213ENST00000540338 IRGQQ8WZA9 623 aa11.03□□□□□ -0.64
CLIP1-213ENST00000540338 FBXO32Q969P5 355 aa11.03□□□□□ -0.64
CLIP1-213ENST00000540338 TMEM237Q96Q45 408 aa11.03□□□□□ -0.64
CLIP1-213ENST00000540338 NPY6RQ99463 290 aa11.03□□□□□ -0.64
CLIP1-213ENST00000540338 SYBUQ9NX95 663 aa11.03□□□□□ -0.64
CLIP1-213ENST00000540338 FBXW11Q9UKB1 542 aa11.03□□□□□ -0.64
CLIP1-213ENST00000540338 CDY1Q9Y6F8 540 aa11.03□□□□□ -0.64
CLIP1-213ENST00000540338 TPP1O14773 563 aa11.03□□□□□ -0.64
CLIP1-213ENST00000540338 KLHL2O95198 593 aa11.03□□□□□ -0.64
CLIP1-213ENST00000540338 CALB2P22676 271 aa11.03□□□□□ -0.64
CLIP1-213ENST00000540338 PMLP29590 882 aa11.03□□□□□ -0.64
CLIP1-213ENST00000540338 BST1Q10588 318 aa11.03□□□□□ -0.64
CLIP1-213ENST00000540338 ZNF235Q14590 738 aa11.03□□□□□ -0.64
CLIP1-213ENST00000540338 CRYMQ14894 314 aa11.03□□□□□ -0.64
CLIP1-213ENST00000540338 INTS6LQ5JSJ4 861 aaKnown RBP11.03□□□□□ -0.64
CLIP1-213ENST00000540338 GDF6Q6KF10 455 aaPredicted RBP11.03□□□□□ -0.64
CLIP1-213ENST00000540338 C16orf46Q6P387 395 aa11.03□□□□□ -0.64
CLIP1-213ENST00000540338 KCNMB4Q86W47 210 aa11.03□□□□□ -0.64
CLIP1-213ENST00000540338 MIB1Q86YT6 1006 aa11.03□□□□□ -0.64
CLIP1-213ENST00000540338 ZNF567Q8N184 647 aa11.03□□□□□ -0.64
CLIP1-213ENST00000540338 SLC25A41Q8N5S1 370 aa11.03□□□□□ -0.64
CLIP1-213ENST00000540338 FICDQ9BVA6 458 aa11.03□□□□□ -0.64
CLIP1-213ENST00000540338 IL22Q9GZX6 179 aa11.03□□□□□ -0.64
CLIP1-213ENST00000540338 TRPV6Q9H1D0 765 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms