RNA–Protein interactions for RNA: ENST00000538995.1

RTN3-209, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 814 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-209ENST00000538995 SIPA1Q96FS4 1042 aa11.96□□□□□ -0.49
RTN3-209ENST00000538995 SPAG5Q96R06 1193 aa11.96□□□□□ -0.49
RTN3-209ENST00000538995 ERGIC2Q96RQ1 377 aa11.96□□□□□ -0.49
RTN3-209ENST00000538995 PRMT1Q99873 361 aaKnown RBP11.96□□□□□ -0.49
RTN3-209ENST00000538995 BPIFA3Q9BQP9 254 aa11.96□□□□□ -0.49
RTN3-209ENST00000538995 EDEM2Q9BV94 578 aa11.96□□□□□ -0.49
RTN3-209ENST00000538995 SMOC1Q9H4F8 434 aa11.96□□□□□ -0.49
RTN3-209ENST00000538995 ITM2CQ9NQX7 267 aa11.96□□□□□ -0.49
RTN3-209ENST00000538995 STIM2Q9P246 746 aa11.96□□□□□ -0.49
RTN3-209ENST00000538995 NOCTQ9UK39 431 aaKnown RBP11.96□□□□□ -0.49
RTN3-209ENST00000538995 PAXBP1Q9Y5B6 917 aa11.96□□□□□ -0.49
RTN3-209ENST00000538995 MUC22E2RYF6 1773 aaPredicted RBP11.95□□□□□ -0.5
RTN3-209ENST00000538995 ABCA7Q8IZY2 2146 aa11.95□□□□□ -0.5
RTN3-209ENST00000538995 A0A1B0GVM2 712 aa11.95□□□□□ -0.5
RTN3-209ENST00000538995 TCAF2A6NFQ2 919 aa11.95□□□□□ -0.5
RTN3-209ENST00000538995 H0Y626 953 aa11.95□□□□□ -0.5
RTN3-209ENST00000538995 OXTRP30559 389 aa11.95□□□□□ -0.5
RTN3-209ENST00000538995 STAT1P42224 750 aa11.95□□□□□ -0.5
RTN3-209ENST00000538995 KLK7P49862 253 aa11.95□□□□□ -0.5
RTN3-209ENST00000538995 ST8SIA6P61647 398 aa11.95□□□□□ -0.5
RTN3-209ENST00000538995 NOMO3P69849 1222 aa11.95□□□□□ -0.5
RTN3-209ENST00000538995 CDR2Q01850 454 aa11.95□□□□□ -0.5
RTN3-209ENST00000538995 ZBTB16Q05516 673 aa11.95□□□□□ -0.5
RTN3-209ENST00000538995 ZNF33AQ06730 810 aa11.95□□□□□ -0.5
RTN3-209ENST00000538995 NCAPHQ15003 741 aa11.95□□□□□ -0.5
RTN3-209ENST00000538995 SYCP1Q15431 976 aa11.95□□□□□ -0.5
RTN3-209ENST00000538995 BRMS1LQ5PSV4 323 aa11.95□□□□□ -0.5
RTN3-209ENST00000538995 FAM102AQ5T9C2 384 aaPredicted RBP11.95□□□□□ -0.5
RTN3-209ENST00000538995 OTUD1Q5VV17 481 aaPredicted RBP11.95□□□□□ -0.5
RTN3-209ENST00000538995 TAF3Q5VWG9 929 aa11.95□□□□□ -0.5
RTN3-209ENST00000538995 TRIM72Q6ZMU5 477 aa11.95□□□□□ -0.5
RTN3-209ENST00000538995 ARMCX6Q7L4S7 300 aa11.95□□□□□ -0.5
RTN3-209ENST00000538995 XYLT1Q86Y38 959 aa11.95□□□□□ -0.5
RTN3-209ENST00000538995 CARNMT1Q8N4J0 409 aa11.95□□□□□ -0.5
RTN3-209ENST00000538995 NEK11Q8NG66 645 aa11.95□□□□□ -0.5
RTN3-209ENST00000538995 CYB5D2Q8WUJ1 264 aa11.95□□□□□ -0.5
RTN3-209ENST00000538995 RNF34Q969K3 372 aa11.95□□□□□ -0.5
RTN3-209ENST00000538995 ZNF419Q96HQ0 510 aaPredicted RBP11.95□□□□□ -0.5
RTN3-209ENST00000538995 NPY6RQ99463 290 aa11.95□□□□□ -0.5
RTN3-209ENST00000538995 PCED1AQ9H1Q7 454 aa11.95□□□□□ -0.5
RTN3-209ENST00000538995 SLC6A17Q9H1V8 727 aa11.95□□□□□ -0.5
RTN3-209ENST00000538995 RXFP3Q9NSD7 469 aa11.95□□□□□ -0.5
RTN3-209ENST00000538995 WSB2Q9NYS7 404 aaPredicted RBP11.95□□□□□ -0.5
RTN3-209ENST00000538995 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP11.95□□□□□ -0.5
RTN3-209ENST00000538995 TMEM63CQ9P1W3 806 aa11.95□□□□□ -0.5
RTN3-209ENST00000538995 KIAA1522Q9P206 1035 aaPredicted RBP11.95□□□□□ -0.5
RTN3-209ENST00000538995 SUN2Q9UH99 717 aa11.95□□□□□ -0.5
RTN3-209ENST00000538995 PILRBQ9UKJ0 227 aa11.95□□□□□ -0.5
RTN3-209ENST00000538995 CKAP5Q14008 2032 aa11.94□□□□□ -0.5
RTN3-209ENST00000538995 LAMA1P25391 3075 aa11.94□□□□□ -0.5
RTN3-209ENST00000538995 M0QYT0 321 aa11.94□□□□□ -0.5
RTN3-209ENST00000538995 EPHB6O15197 1021 aa11.94□□□□□ -0.5
RTN3-209ENST00000538995 NDUFS2O75306 463 aa11.94□□□□□ -0.5
RTN3-209ENST00000538995 GFPT2O94808 682 aa11.94□□□□□ -0.5
RTN3-209ENST00000538995 F9P00740 461 aa11.94□□□□□ -0.5
RTN3-209ENST00000538995 CYP1A1P04798 512 aaPredicted RBP11.94□□□□□ -0.5
RTN3-209ENST00000538995 SRPRAP08240 638 aaKnown RBP11.94□□□□□ -0.5
RTN3-209ENST00000538995 MMEP08473 750 aa11.94□□□□□ -0.5
RTN3-209ENST00000538995 ACADMP11310 421 aa11.94□□□□□ -0.5
RTN3-209ENST00000538995 HLA-EP13747 358 aa11.94□□□□□ -0.5
RTN3-209ENST00000538995 CDK11BP21127 795 aaKnown RBP11.94□□□□□ -0.5
RTN3-209ENST00000538995 ITPKAP23677 461 aa11.94□□□□□ -0.5
RTN3-209ENST00000538995 CSKP41240 450 aa11.94□□□□□ -0.5
RTN3-209ENST00000538995 CXCR3P49682 368 aa11.94□□□□□ -0.5
RTN3-209ENST00000538995 TPMTP51580 245 aa11.94□□□□□ -0.5
RTN3-209ENST00000538995 UBXN1Q04323 297 aa11.94□□□□□ -0.5
RTN3-209ENST00000538995 SULT2A1Q06520 285 aa11.94□□□□□ -0.5
RTN3-209ENST00000538995 NME3Q13232 169 aa11.94□□□□□ -0.5
RTN3-209ENST00000538995 HNRNPA1L2Q32P51 320 aaKnown RBP11.94□□□□□ -0.5
RTN3-209ENST00000538995 PLEKHG6Q3KR16 790 aa11.94□□□□□ -0.5
RTN3-209ENST00000538995 SLC25A52Q3SY17 297 aa11.94□□□□□ -0.5
RTN3-209ENST00000538995 TRIM61Q5EBN2 209 aa11.94□□□□□ -0.5
RTN3-209ENST00000538995 PITRM1Q5JRX3 1037 aa11.94□□□□□ -0.5
RTN3-209ENST00000538995 SYCP2LQ5T4T6 812 aa11.94□□□□□ -0.5
RTN3-209ENST00000538995 NAA35Q5VZE5 725 aa11.94□□□□□ -0.5
RTN3-209ENST00000538995 FBXL22Q6P050 247 aa11.94□□□□□ -0.5
RTN3-209ENST00000538995 SLC23A3Q6PIS1 610 aa11.94□□□□□ -0.5
RTN3-209ENST00000538995 SND1Q7KZF4 910 aaKnown RBP eCLIP11.94□□□□□ -0.5
RTN3-209ENST00000538995 APTXQ7Z2E3 356 aaKnown RBP11.94□□□□□ -0.5
RTN3-209ENST00000538995 CFAP52Q8N1V2 620 aa11.94□□□□□ -0.5
RTN3-209ENST00000538995 AOPEPQ8N6M6 819 aa11.94□□□□□ -0.5
RTN3-209ENST00000538995 CADM4Q8NFZ8 388 aa11.94□□□□□ -0.5
RTN3-209ENST00000538995 ERLEC1Q96DZ1 483 aa11.94□□□□□ -0.5
RTN3-209ENST00000538995 HSPA12BQ96MM6 686 aa11.94□□□□□ -0.5
RTN3-209ENST00000538995 PPP1R9BQ96SB3 815 aa11.94□□□□□ -0.5
RTN3-209ENST00000538995 NUSAP1Q9BXS6 441 aaKnown RBP11.94□□□□□ -0.5
RTN3-209ENST00000538995 HSD3B7Q9H2F3 369 aa11.94□□□□□ -0.5
RTN3-209ENST00000538995 ARHGEF38Q9NXL2 777 aa11.94□□□□□ -0.5
RTN3-209ENST00000538995 SUSD2Q9UGT4 822 aa11.94□□□□□ -0.5
RTN3-209ENST00000538995 INTS6Q9UL03 887 aaKnown RBP11.94□□□□□ -0.5
RTN3-209ENST00000538995 SPTBN2O15020 2390 aa11.94□□□□□ -0.5
RTN3-209ENST00000538995 ITIH6Q6UXX5 1313 aa11.93□□□□□ -0.5
RTN3-209ENST00000538995 RALGAPA1Q6GYQ0 2036 aa11.93□□□□□ -0.5
RTN3-209ENST00000538995 SYNJ2BP-COX16A0A087WUM0 186 aa11.93□□□□□ -0.5
RTN3-209ENST00000538995 DCDC2BA2VCK2 349 aa11.93□□□□□ -0.5
RTN3-209ENST00000538995 TM4SF5O14894 197 aa11.93□□□□□ -0.5
RTN3-209ENST00000538995 CLDN11O75508 207 aa11.93□□□□□ -0.5
RTN3-209ENST00000538995 MMP8P22894 467 aa11.93□□□□□ -0.5
RTN3-209ENST00000538995 SULT1E1P49888 294 aa11.93□□□□□ -0.5
RTN3-209ENST00000538995 VASPP50552 380 aaPredicted RBP11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms