RNA–Protein interactions for RNA: ENST00000538708.5

PTPRB-204, Transcript of protein tyrosine phosphatase, receptor type B, humanhuman

TSL 1 (best) BASIC

Gene PTPRB, Length 5,839 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRB-204ENST00000538708 RBP1P09455 135 aa9.68□□□□□ -0.86
PTPRB-204ENST00000538708 FBXO38Q6PIJ6 1188 aa9.68□□□□□ -0.86
PTPRB-204ENST00000538708 LRIG3Q6UXM1 1119 aa9.68□□□□□ -0.86
PTPRB-204ENST00000538708 SPATA21Q7Z572 469 aa9.68□□□□□ -0.86
PTPRB-204ENST00000538708 SETD3Q86TU7 594 aaPredicted RBP9.68□□□□□ -0.86
PTPRB-204ENST00000538708 TTC7BQ86TV6 843 aa9.68□□□□□ -0.86
PTPRB-204ENST00000538708 IL31RAQ8NI17 732 aa9.68□□□□□ -0.86
PTPRB-204ENST00000538708 HTR3CQ8WXA8 447 aa9.68□□□□□ -0.86
PTPRB-204ENST00000538708 TSPAN18Q96SJ8 248 aa9.68□□□□□ -0.86
PTPRB-204ENST00000538708 ZYG11BQ9C0D3 744 aa9.68□□□□□ -0.86
PTPRB-204ENST00000538708 TMPRSS4Q9NRS4 437 aa9.68□□□□□ -0.86
PTPRB-204ENST00000538708 PPIEQ9UNP9 301 aaKnown RBP9.68□□□□□ -0.86
PTPRB-204ENST00000538708 SMIM22K7EJ46 135 aa9.67□□□□□ -0.86
PTPRB-204ENST00000538708 MYO1CO00159 1063 aa9.67□□□□□ -0.86
PTPRB-204ENST00000538708 B4GALT5O43286 388 aa9.67□□□□□ -0.86
PTPRB-204ENST00000538708 GZMAP12544 262 aa9.67□□□□□ -0.86
PTPRB-204ENST00000538708 TCF3P15923 654 aa9.67□□□□□ -0.86
PTPRB-204ENST00000538708 SMPD1P17405 629 aa9.67□□□□□ -0.86
PTPRB-204ENST00000538708 GRM5P41594 1212 aa9.67□□□□□ -0.86
PTPRB-204ENST00000538708 WASP42768 502 aa9.67□□□□□ -0.86
PTPRB-204ENST00000538708 NR2C2P49116 596 aa9.67□□□□□ -0.86
PTPRB-204ENST00000538708 ERVK-21P61565 698 aa9.67□□□□□ -0.86
PTPRB-204ENST00000538708 DUSP4Q13115 394 aa9.67□□□□□ -0.86
PTPRB-204ENST00000538708 C16orf72Q14CZ0 275 aa9.67□□□□□ -0.86
PTPRB-204ENST00000538708 TRMT13Q9NUP7 481 aaKnown RBP9.67□□□□□ -0.86
PTPRB-204ENST00000538708 PADI3Q9ULW8 664 aa9.67□□□□□ -0.86
PTPRB-204ENST00000538708 SHOC2Q9UQ13 582 aa9.67□□□□□ -0.86
PTPRB-204ENST00000538708 WDR27A2RRH5 827 aa9.67□□□□□ -0.86
PTPRB-204ENST00000538708 HS6ST1O60243 411 aa9.67□□□□□ -0.86
PTPRB-204ENST00000538708 RRM2P31350 389 aa9.67□□□□□ -0.86
PTPRB-204ENST00000538708 GRSF1Q12849 480 aaKnown RBP eCLIP9.67□□□□□ -0.86
PTPRB-204ENST00000538708 AASDHQ4L235 1098 aaPredicted RBP9.67□□□□□ -0.86
PTPRB-204ENST00000538708 CTU1Q7Z7A3 348 aaKnown RBP9.67□□□□□ -0.86
PTPRB-204ENST00000538708 RIBC1Q8N443 379 aaPredicted RBP9.67□□□□□ -0.86
PTPRB-204ENST00000538708 MCRS1Q96EZ8 462 aa9.67□□□□□ -0.86
PTPRB-204ENST00000538708 WDR24Q96S15 920 aa9.67□□□□□ -0.86
PTPRB-204ENST00000538708 NXF3Q9H4D5 531 aaKnown RBP9.67□□□□□ -0.86
PTPRB-204ENST00000538708 KIAA1522Q9P206 1035 aaPredicted RBP9.67□□□□□ -0.86
PTPRB-204ENST00000538708 ASTN2O75129 1339 aaPredicted RBP9.67□□□□□ -0.86
PTPRB-204ENST00000538708 CLDN5O00501 218 aa9.67□□□□□ -0.86
PTPRB-204ENST00000538708 ZNF862O60290 1169 aa9.67□□□□□ -0.86
PTPRB-204ENST00000538708 KLHL2O95198 593 aa9.67□□□□□ -0.86
PTPRB-204ENST00000538708 NOS2P35228 1153 aa9.67□□□□□ -0.86
PTPRB-204ENST00000538708 PGM1P36871 562 aa9.67□□□□□ -0.86
PTPRB-204ENST00000538708 GYS2P54840 703 aa9.67□□□□□ -0.86
PTPRB-204ENST00000538708 ATAD3BQ5T9A4 648 aa9.67□□□□□ -0.86
PTPRB-204ENST00000538708 FAM183BPQ6ZVS7 135 aa9.67□□□□□ -0.86
PTPRB-204ENST00000538708 METTL3Q86U44 580 aaKnown RBP9.67□□□□□ -0.86
PTPRB-204ENST00000538708 RASAL3Q86YV0 1011 aa9.67□□□□□ -0.86
PTPRB-204ENST00000538708 FAM9CQ8IZT9 166 aa9.67□□□□□ -0.86
PTPRB-204ENST00000538708 TBCBQ99426 244 aa9.67□□□□□ -0.86
PTPRB-204ENST00000538708 PACSIN1Q9BY11 444 aa9.67□□□□□ -0.86
PTPRB-204ENST00000538708 RNPEPQ9H4A4 650 aa9.67□□□□□ -0.86
PTPRB-204ENST00000538708 CATSPERZQ9NTU4 200 aa9.67□□□□□ -0.86
PTPRB-204ENST00000538708 MRGBPQ9NV56 204 aa9.67□□□□□ -0.86
PTPRB-204ENST00000538708 HACD1B0YJ81 288 aa9.67□□□□□ -0.86
PTPRB-204ENST00000538708 TISP43B9A030 160 aa9.67□□□□□ -0.86
PTPRB-204ENST00000538708 OCA2Q04671 838 aa9.67□□□□□ -0.86
PTPRB-204ENST00000538708 FSTL1Q12841 308 aa9.67□□□□□ -0.86
PTPRB-204ENST00000538708 CBWD6Q4V339 395 aa9.67□□□□□ -0.86
PTPRB-204ENST00000538708 C11orf63Q6NUN7 778 aa9.67□□□□□ -0.86
PTPRB-204ENST00000538708 WNT8BQ93098 351 aa9.67□□□□□ -0.86
PTPRB-204ENST00000538708 ERP44Q9BS26 406 aa9.67□□□□□ -0.86
PTPRB-204ENST00000538708 TM6SF2Q9BZW4 377 aa9.67□□□□□ -0.86
PTPRB-204ENST00000538708 TFR2Q9UP52 801 aa9.67□□□□□ -0.86
PTPRB-204ENST00000538708 RAD54BQ9Y620 910 aa9.67□□□□□ -0.86
PTPRB-204ENST00000538708 PEX10O60683 326 aa9.67□□□□□ -0.86
PTPRB-204ENST00000538708 SLC2A4P14672 509 aa9.67□□□□□ -0.86
PTPRB-204ENST00000538708 RPA3P35244 121 aaPredicted RBP9.67□□□□□ -0.86
PTPRB-204ENST00000538708 CD86P42081 329 aa9.67□□□□□ -0.86
PTPRB-204ENST00000538708 MTFMTQ96DP5 389 aaKnown RBP9.67□□□□□ -0.86
PTPRB-204ENST00000538708 CLIP3Q96DZ5 547 aa9.67□□□□□ -0.86
PTPRB-204ENST00000538708 VPS50Q96JG6 964 aa9.67□□□□□ -0.86
PTPRB-204ENST00000538708 PPP1R10Q96QC0 940 aaKnown RBP9.67□□□□□ -0.86
PTPRB-204ENST00000538708 MLPHQ9BV36 600 aaPredicted RBP9.67□□□□□ -0.86
PTPRB-204ENST00000538708 ILKAPQ9H0C8 392 aaPredicted RBP9.67□□□□□ -0.86
PTPRB-204ENST00000538708 OR12D3Q9UGF7 316 aa9.67□□□□□ -0.86
PTPRB-204ENST00000538708 GNPTGQ9UJJ9 305 aa9.67□□□□□ -0.86
PTPRB-204ENST00000538708 PTPRJQ12913 1337 aa9.67□□□□□ -0.86
PTPRB-204ENST00000538708 MPOP05164 745 aa9.66□□□□□ -0.86
PTPRB-204ENST00000538708 TPBGLP0DKB5 382 aa9.66□□□□□ -0.86
PTPRB-204ENST00000538708 PTPN2P17706 415 aa9.66□□□□□ -0.86
PTPRB-204ENST00000538708 ABL2P42684 1182 aa9.66□□□□□ -0.86
PTPRB-204ENST00000538708 MAPK8P45983 427 aa9.66□□□□□ -0.86
PTPRB-204ENST00000538708 CD151P48509 253 aa9.66□□□□□ -0.86
PTPRB-204ENST00000538708 SERPINB4P48594 390 aa9.66□□□□□ -0.86
PTPRB-204ENST00000538708 NPY2RP49146 381 aa9.66□□□□□ -0.86
PTPRB-204ENST00000538708 CLK3P49761 638 aaKnown RBP9.66□□□□□ -0.86
PTPRB-204ENST00000538708 MCL1Q07820 350 aa9.66□□□□□ -0.86
PTPRB-204ENST00000538708 SPIDRQ14159 915 aa9.66□□□□□ -0.86
PTPRB-204ENST00000538708 TSHZ1Q6ZSZ6 1077 aa9.66□□□□□ -0.86
PTPRB-204ENST00000538708 TOP6BLQ8N6T0 577 aa9.66□□□□□ -0.86
PTPRB-204ENST00000538708 CYGBQ8WWM9 190 aa9.66□□□□□ -0.86
PTPRB-204ENST00000538708 CMTM5Q96DZ9 223 aa9.66□□□□□ -0.86
PTPRB-204ENST00000538708 MTMR9Q96QG7 549 aa9.66□□□□□ -0.86
PTPRB-204ENST00000538708 SMAD5Q99717 465 aaKnown RBP9.66□□□□□ -0.86
PTPRB-204ENST00000538708 BPIFA1Q9NP55 256 aa9.66□□□□□ -0.86
PTPRB-204ENST00000538708 IFT172Q9UG01 1749 aa9.66□□□□□ -0.86
PTPRB-204ENST00000538708 SLIT3O75094 1523 aa9.66□□□□□ -0.86
PTPRB-204ENST00000538708 MROH1Q8NDA8 1641 aa9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms