RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 ZNF840PA6NDX5 716 aa7.7□□□□□ -1.18
CD44-228ENST00000528455 MBTPS2O43462 519 aa7.7□□□□□ -1.18
CD44-228ENST00000528455 BUB1BO60566 1050 aaPredicted RBP7.7□□□□□ -1.18
CD44-228ENST00000528455 TBX10O75333 385 aa7.7□□□□□ -1.18
CD44-228ENST00000528455 PALMO75781 387 aa7.7□□□□□ -1.18
CD44-228ENST00000528455 SMNDC1O75940 238 aaKnown RBP eCLIP7.7□□□□□ -1.18
CD44-228ENST00000528455 PROSCO94903 275 aa7.7□□□□□ -1.18
CD44-228ENST00000528455 MOCS3O95396 460 aa7.7□□□□□ -1.18
CD44-228ENST00000528455 NCAM1P13591 858 aa7.7□□□□□ -1.18
CD44-228ENST00000528455 EPCAMP16422 314 aa7.7□□□□□ -1.18
CD44-228ENST00000528455 GPD1P21695 349 aa7.7□□□□□ -1.18
CD44-228ENST00000528455 SDC4P31431 198 aa7.7□□□□□ -1.18
CD44-228ENST00000528455 PCK1P35558 622 aa7.7□□□□□ -1.18
CD44-228ENST00000528455 ATP5C1P36542 298 aaKnown RBP7.7□□□□□ -1.18
CD44-228ENST00000528455 TUBP50607 506 aa7.7□□□□□ -1.18
CD44-228ENST00000528455 MTA1Q13330 715 aa7.7□□□□□ -1.18
CD44-228ENST00000528455 SMAD4Q13485 552 aaKnown RBP7.7□□□□□ -1.18
CD44-228ENST00000528455 EIF4EBP2Q13542 120 aaPredicted RBP7.7□□□□□ -1.18
CD44-228ENST00000528455 MESDQ14696 234 aa7.7□□□□□ -1.18
CD44-228ENST00000528455 SMAD2Q15796 467 aaKnown RBP7.7□□□□□ -1.18
CD44-228ENST00000528455 CCDC14Q49A88 953 aa7.7□□□□□ -1.18
CD44-228ENST00000528455 BOLA3Q53S33 107 aa7.7□□□□□ -1.18
CD44-228ENST00000528455 ZNF569Q5MCW4 686 aa7.7□□□□□ -1.18
CD44-228ENST00000528455 LRRC38Q5VT99 294 aa7.7□□□□□ -1.18
CD44-228ENST00000528455 SYPL2Q5VXT5 272 aa7.7□□□□□ -1.18
CD44-228ENST00000528455 C11orf63Q6NUN7 778 aa7.7□□□□□ -1.18
CD44-228ENST00000528455 BNIPLQ7Z465 357 aa7.7□□□□□ -1.18
CD44-228ENST00000528455 DAAM2Q86T65 1068 aa7.7□□□□□ -1.18
CD44-228ENST00000528455 TADA2BQ86TJ2 420 aa7.7□□□□□ -1.18
CD44-228ENST00000528455 ADHFE1Q8IWW8 467 aa7.7□□□□□ -1.18
CD44-228ENST00000528455 DEFB106AQ8N104 65 aa7.7□□□□□ -1.18
CD44-228ENST00000528455 TMEM102Q8N9M5 508 aaPredicted RBP7.7□□□□□ -1.18
CD44-228ENST00000528455 LRRC57Q8N9N7 239 aa7.7□□□□□ -1.18
CD44-228ENST00000528455 JOSD2Q8TAC2 188 aa7.7□□□□□ -1.18
CD44-228ENST00000528455 CLEC4CQ8WTT0 213 aa7.7□□□□□ -1.18
CD44-228ENST00000528455 RNF139Q8WU17 664 aa7.7□□□□□ -1.18
CD44-228ENST00000528455 NDRG1Q92597 394 aaKnown RBP7.7□□□□□ -1.18
CD44-228ENST00000528455 NXPE3Q969Y0 559 aa7.7□□□□□ -1.18
CD44-228ENST00000528455 FAM149B1Q96BN6 582 aa7.7□□□□□ -1.18
CD44-228ENST00000528455 MSLNLQ96KJ4 702 aa7.7□□□□□ -1.18
CD44-228ENST00000528455 MCEEQ96PE7 176 aa7.7□□□□□ -1.18
CD44-228ENST00000528455 ALS2CR12Q96Q35 445 aa7.7□□□□□ -1.18
CD44-228ENST00000528455 NMUR1Q9HB89 426 aa7.7□□□□□ -1.18
CD44-228ENST00000528455 MAN1C1Q9NR34 630 aa7.7□□□□□ -1.18
CD44-228ENST00000528455 METTL5Q9NRN9 209 aaKnown RBP7.7□□□□□ -1.18
CD44-228ENST00000528455 MTPAPQ9NVV4 582 aaKnown RBP eCLIP7.7□□□□□ -1.18
CD44-228ENST00000528455 TRIM10Q9UDY6 481 aa7.7□□□□□ -1.18
CD44-228ENST00000528455 AMFRQ9UKV5 643 aa7.7□□□□□ -1.18
CD44-228ENST00000528455 MKL2Q9ULH7 1088 aa7.7□□□□□ -1.18
CD44-228ENST00000528455 STAP1Q9ULZ2 295 aa7.7□□□□□ -1.18
CD44-228ENST00000528455 MAGED2Q9UNF1 606 aaPredicted RBP7.7□□□□□ -1.18
CD44-228ENST00000528455 CLUHO75153 1309 aa7.7□□□□□ -1.18
CD44-228ENST00000528455 A0A1W2PQH9 124 aa7.69□□□□□ -1.18
CD44-228ENST00000528455 FAM181BA6NEQ2 426 aa7.69□□□□□ -1.18
CD44-228ENST00000528455 MIF4GDA9UHW6 222 aaKnown RBP7.69□□□□□ -1.18
CD44-228ENST00000528455 PI4K2BG5E9Z4 385 aa7.69□□□□□ -1.18
CD44-228ENST00000528455 PDE2AO00408 941 aaPredicted RBP7.69□□□□□ -1.18
CD44-228ENST00000528455 DAB1O75553 588 aa7.69□□□□□ -1.18
CD44-228ENST00000528455 RFPL2O75678 378 aa7.69□□□□□ -1.18
CD44-228ENST00000528455 GRAP2O75791 330 aa7.69□□□□□ -1.18
CD44-228ENST00000528455 SLC2A3P11169 496 aa7.69□□□□□ -1.18
CD44-228ENST00000528455 RARGP13631 454 aa7.69□□□□□ -1.18
CD44-228ENST00000528455 ALADP13716 330 aa7.69□□□□□ -1.18
CD44-228ENST00000528455 PSMA2P25787 234 aa7.69□□□□□ -1.18
CD44-228ENST00000528455 DDX6P26196 483 aaKnown RBP eCLIP7.69□□□□□ -1.18
CD44-228ENST00000528455 CDC25CP30307 473 aa7.69□□□□□ -1.18
CD44-228ENST00000528455 FLT3P36888 993 aa7.69□□□□□ -1.18
CD44-228ENST00000528455 AIF1P55008 147 aa7.69□□□□□ -1.18
CD44-228ENST00000528455 GNG11P61952 73 aa7.69□□□□□ -1.18
CD44-228ENST00000528455 COG7P83436 770 aa7.69□□□□□ -1.18
CD44-228ENST00000528455 OGDHQ02218 1023 aa7.69□□□□□ -1.18
CD44-228ENST00000528455 ITIH3Q06033 890 aa7.69□□□□□ -1.18
CD44-228ENST00000528455 HADHQ16836 314 aaKnown RBP7.69□□□□□ -1.18
CD44-228ENST00000528455 HECTD3Q5T447 861 aa7.69□□□□□ -1.18
CD44-228ENST00000528455 ACBD5Q5T8D3 534 aaPredicted RBP7.69□□□□□ -1.18
CD44-228ENST00000528455 MEI1Q5TIA1 1274 aa7.69□□□□□ -1.18
CD44-228ENST00000528455 ALG1LQ6GMV1 187 aa7.69□□□□□ -1.18
CD44-228ENST00000528455 LLGL2Q6P1M3 1020 aa7.69□□□□□ -1.18
CD44-228ENST00000528455 CC2D1AQ6P1N0 951 aaPredicted RBP7.69□□□□□ -1.18
CD44-228ENST00000528455 MSANTD2Q6P1R3 559 aa7.69□□□□□ -1.18
CD44-228ENST00000528455 PEX26Q7Z412 305 aa7.69□□□□□ -1.18
CD44-228ENST00000528455 TMEM150AQ86TG1 271 aa7.69□□□□□ -1.18
CD44-228ENST00000528455 NT5DC3Q86UY8 548 aa7.69□□□□□ -1.18
CD44-228ENST00000528455 PSTKQ8IV42 348 aaKnown RBP7.69□□□□□ -1.18
CD44-228ENST00000528455 EMC1Q8N766 993 aa7.69□□□□□ -1.18
CD44-228ENST00000528455 BEND7Q8N7W2 519 aaPredicted RBP7.69□□□□□ -1.18
CD44-228ENST00000528455 VN1R2Q8NFZ6 395 aa7.69□□□□□ -1.18
CD44-228ENST00000528455 FBF1Q8TES7 1133 aa7.69□□□□□ -1.18
CD44-228ENST00000528455 AZIN2Q96A70 460 aa7.69□□□□□ -1.18
CD44-228ENST00000528455 PIWIL1Q96J94 861 aaKnown RBP7.69□□□□□ -1.18
CD44-228ENST00000528455 TCF12Q99081 682 aa7.69□□□□□ -1.18
CD44-228ENST00000528455 EPHX3Q9H6B9 360 aa7.69□□□□□ -1.18
CD44-228ENST00000528455 WDCPQ9H6R7 721 aa7.69□□□□□ -1.18
CD44-228ENST00000528455 CD320Q9NPF0 282 aa7.69□□□□□ -1.18
CD44-228ENST00000528455 SLTMQ9NWH9 1034 aaKnown RBP eCLIP7.69□□□□□ -1.18
CD44-228ENST00000528455 OSER1Q9NX31 292 aa7.69□□□□□ -1.18
CD44-228ENST00000528455 CLEC1BQ9P126 229 aa7.69□□□□□ -1.18
CD44-228ENST00000528455 DNMT3BQ9UBC3 853 aaKnown RBP7.69□□□□□ -1.18
CD44-228ENST00000528455 NAALADL1Q9UQQ1 740 aa7.69□□□□□ -1.18
CD44-228ENST00000528455 SBDSQ9Y3A5 250 aaKnown RBP eCLIP7.69□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms